Prupe.1G245400_v2.0.a1

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000205
Physical Location & Seq
Forward (+)
25892694 .. 25894736
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G245400.1

Sequence Viewer

Length: 978 bp
ATGGCAAATCCTGCTTGTTCAGCCCAAATCCCAGAGGTGGTGCTTGGCTCCTCCACTGGCCCCAAGAGCATGCCTGTGCTTGCCTTTGGCACAGCAGCTAATAACTTACAGCCTATTCAGTTGAAAACAGCAGTTCTTGAGGCCATCAAGCTTGGTTACAGGCACTTTGATACAGCTGCCGTTTATGGCTCAGAGCAGCCTCTGGGTGAAGCTATCAAAGAAGCACTTAAGCTTGGCCTTGTTGCTTCCAGAGACCAACTCTTCATCACTTCAAAGCTTTGGAGCAATGATGCTCACCCTCATCATGTCATTCCTGCCCTCAAGAAATCACTTGAGAATCTTCAATTGGAGTACCTTGACCTGTATCTCATCCACTGGCCCATCAGTGCCAAGCCAGGAAAATTTGTGTTCCCACTGGTTGACGTTATGCCAATGGACTTCAAGGGTGTGTGGGCAGCCATGGAAGAATCTCAGAGACTTGGCCTCACCAAATCAATTGGAGTCAGCAATTTCACTTGCAAAAAGATTGAAACTTTACTCTCTCATGCTACCATTCCTCCCTCGGTCAATCAAGTGGAGATGAGCCCATTCTGGCAACAGAAGAAGCTAAGAGACTTCTGCAAGGCCAATGGTATAGTTGTGACTGCCTTCTCTCCTTTGGGTGCCAAGGGAACCAGCTGGGGATCCAACCATGTTATGGAAAGCAAAGTGCTTCAGGATATAGCAGAGGCTCGAGGGAAAACAGTTGCTCAGGTTTGTATTAGATGGGTATACCAGACAGGGGCAACTCTTGCTGTTAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATCTGCAGGTGTTTGACTGGGAGCTATCAGAAGATGACCTTCACAAGATCAATCAAATCCCACAGCACAAAATGGTTACCAGGGGAGAACTGGTTTCGGCTGACGGACCATACAAATCCCTTGAAGAATTATGGGATGGAGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

326

Amino Acids

36.02

Weight (kDa)

7.7

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 826
Acc36I ACCTGC 1 cut(s) 826
AccB1I GGYRCC 1 cut(s) 662
AccB7I CCANNNNNTGG 1 cut(s) 697
AccI GTMKAC 1 cut(s) 771
AclWI GGATC 2 cut(s) 678, 691
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 698
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 37, 697, 781
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 7 cut(s) 124, 273, 344, 442, 530, 823, 953
AjnI CCWGG 2 cut(s) 394, 908
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
Alw26I GTCTC 3 cut(s) 246, 469, 606
AlwI GGATC 2 cut(s) 678, 691
AlwNI CAGNNNCTG 2 cut(s) 202, 832
Ama87I CYCGRG 1 cut(s) 732
AoxI GGCC 6 cut(s) 58, 141, 235, 377, 481, 624
ApeKI GCWGC 4 cut(s) 95, 176, 196, 455
ApoI RAATTY 1 cut(s) 401
AspS9I GGNCC 3 cut(s) 59, 378, 935
AsuHPI GGTGA 3 cut(s) 218, 287, 478
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 1 cut(s) 935
BamHI GGATCC 1 cut(s) 683
BanI GGYRCC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 587
BbvI GCAGC 4 cut(s) 107, 163, 208, 467
BccI CCATC 4 cut(s) 152, 389, 759, 959
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 2 cut(s) 396, 910
BcoDI GTCTC 3 cut(s) 246, 469, 606
BfmI CTRYAG 1 cut(s) 833
BfrI CTTAAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 826
BisI GCNGC 4 cut(s) 96, 177, 197, 456
BlsI GCNGC 4 cut(s) 97, 178, 198, 457
Bme1390I CCNGG 2 cut(s) 396, 910
Bme18I GGWCC 1 cut(s) 935
BmeT110I CYCGRG 1 cut(s) 732
BmgT120I GGNCC 3 cut(s) 59, 378, 935
BmiI GGNNCC 5 cut(s) 49, 61, 664, 673, 685
BmrFI CCNGG 2 cut(s) 396, 910
BmrI ACTGGG 1 cut(s) 856
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 856
BplI GAGNNNNNCTC 2 cut(s) 243, 275
Bpu10I CCTNAGC 1 cut(s) 750
BpuEI CTTGAG 3 cut(s) 158, 305, 353
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 4 cut(s) 459, 561, 666, 909
BsaXI ACNNNNNCTCC 4 cut(s) 541, 571, 906, 936
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 697, 781
Bse1I ACTGG 5 cut(s) 61, 380, 420, 851, 924
Bse3DI GCAATG 1 cut(s) 292
BseBI CCWGG 2 cut(s) 396, 910
BseDI CCNNGG 4 cut(s) 459, 561, 666, 909
BseGI GGATG 2 cut(s) 369, 970
BseLI CCNNNNNNNGG 3 cut(s) 37, 697, 781
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 3 cut(s) 204, 485, 764
BseNI ACTGG 5 cut(s) 61, 380, 420, 851, 924
BseRI GAGGAG 1 cut(s) 40
BseXI GCAGC 4 cut(s) 107, 163, 208, 467
BseYI CCCAGC 1 cut(s) 678
BshFI GGCC 6 cut(s) 60, 143, 237, 379, 483, 626
BshNI GGYRCC 1 cut(s) 662
BsiHKCI CYCGRG 1 cut(s) 732
BslI CCNNNNNNNGG 3 cut(s) 37, 697, 781
BsmAI GTCTC 3 cut(s) 246, 469, 606
BsnI GGCC 6 cut(s) 60, 143, 237, 379, 483, 626
Bso31I GGTCTC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 587
Bsp143I GATC 2 cut(s) 683, 876
Bsp19I CCATGG 1 cut(s) 459
BspANI GGCC 6 cut(s) 60, 143, 237, 379, 483, 626
BspCNI CTCAG 3 cut(s) 203, 484, 763
BspLI GGNNCC 5 cut(s) 49, 61, 664, 673, 685
BspMAI CTGCAG 1 cut(s) 837
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 2 cut(s) 678, 691
BspT107I GGYRCC 1 cut(s) 662
BspTI CTTAAG 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 5 cut(s) 61, 380, 420, 851, 924
BssECI CCNNGG 4 cut(s) 459, 561, 666, 909
BssMI GATC 2 cut(s) 683, 876
BssNAI GTATAC 1 cut(s) 772
BssT1I CCWWGG 2 cut(s) 459, 666
Bst1107I GTATAC 1 cut(s) 772
Bst2UI CCWGG 2 cut(s) 396, 910
Bst4CI ACNGT 1 cut(s) 745
Bst6I CTCTTC 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 227
BstAPI GCANNNNNTGC 3 cut(s) 11, 791, 832
BstC8I GCNNGC 2 cut(s) 71, 81
BstDEI CTNAG 4 cut(s) 190, 471, 608, 750
BstDSI CCRYGG 1 cut(s) 459
BstEII GGTNACC 1 cut(s) 904
BstF5I GGATG 2 cut(s) 369, 970
BstKTI GATC 2 cut(s) 686, 879
BstMAI GTCTC 3 cut(s) 246, 469, 606
BstMBI GATC 2 cut(s) 683, 876
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 66, 791, 832
BstNI CCWGG 2 cut(s) 396, 910
BstNSI RCATGY 1 cut(s) 73
BstPI GGTNACC 1 cut(s) 904
BstSCI CCNGG 2 cut(s) 394, 908
BstSFI CTRYAG 1 cut(s) 833
BstV1I GCAGC 4 cut(s) 107, 163, 208, 467
BstX2I RGATCY 1 cut(s) 683
BstYI RGATCY 1 cut(s) 683
BstZ17I GTATAC 1 cut(s) 772
BsuRI GGCC 6 cut(s) 60, 143, 237, 379, 483, 626
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 2 cut(s) 369, 970
BtsIMutI CAGTG 4 cut(s) 54, 373, 391, 413
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 2 cut(s) 71, 81
CaiI CAGNNNCTG 2 cut(s) 202, 832
Cfr13I GGNCC 3 cut(s) 59, 378, 935
Csp6I GTAC 1 cut(s) 352
CviAII CATG 5 cut(s) 70, 305, 460, 545, 692
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 4 cut(s) 190, 471, 608, 750
DpnI GATC 2 cut(s) 685, 878
DpnII GATC 2 cut(s) 683, 876
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 459, 666
Eco24I GRGCYC 1 cut(s) 587
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 935
Eco57I CTGAAG 1 cut(s) 698
Eco88I CYCGRG 1 cut(s) 732
Eco91I GGTNACC 1 cut(s) 904
EcoO65I GGTNACC 1 cut(s) 904
EcoRII CCWGG 2 cut(s) 394, 908
EcoT14I CCWWGG 2 cut(s) 459, 666
EcoT38I GRGCYC 1 cut(s) 587
ErhI CCWWGG 2 cut(s) 459, 666
FaeI CATG 5 cut(s) 73, 308, 463, 548, 695
FalI AAGNNNNNCTT 4 cut(s) 210, 242, 852, 884
FatI CATG 5 cut(s) 69, 304, 459, 544, 691
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 4 cut(s) 96, 177, 197, 456
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 4 cut(s) 96, 177, 197, 456
GluI GCNGC 4 cut(s) 96, 177, 197, 456
GsaI CCCAGC 1 cut(s) 682
HaeIII GGCC 6 cut(s) 60, 143, 237, 379, 483, 626
Hin1II CATG 5 cut(s) 73, 308, 463, 548, 695
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 3 cut(s) 149, 230, 275
HinfI GANTC 4 cut(s) 337, 467, 501, 829
HphI GGTGA 3 cut(s) 218, 287, 478
Hpy166II GTNNAC 2 cut(s) 421, 772
Hpy188I TCNGA 3 cut(s) 193, 474, 859
Hpy188III TCNNGA 4 cut(s) 137, 249, 322, 716
Hpy8I GTNNAC 2 cut(s) 421, 772
HpyAV CCTTC 2 cut(s) 658, 878
HpyCH4III ACNGT 1 cut(s) 745
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 3 cut(s) 519, 621, 835
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 66, 791, 832
HpyF3I CTNAG 4 cut(s) 190, 471, 608, 750
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 5 cut(s) 73, 308, 463, 548, 695
Kzo9I GATC 2 cut(s) 683, 876
LmnI GCTCC 3 cut(s) 53, 282, 850
Lsp1109I GCAGC 4 cut(s) 107, 163, 208, 467
LweI GCATC 1 cut(s) 280
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 3 cut(s) 155, 640, 904
MalI GATC 2 cut(s) 685, 878
MboI GATC 2 cut(s) 683, 876
MboII GAAGA 6 cut(s) 253, 332, 476, 613, 872, 965
MfeI CAATTG 2 cut(s) 344, 495
MflI RGATCY 1 cut(s) 683
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 5 cut(s) 344, 401, 495, 508, 956
MlyI GAGTC 1 cut(s) 510
MmeI TCCRAC 1 cut(s) 711
MseI TTAA 2 cut(s) 228, 798
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 2 cut(s) 176, 678
MspCI CTTAAG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 396, 910
MunI CAATTG 2 cut(s) 344, 495
MvaI CCWGG 2 cut(s) 396, 910
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 66, 791, 832
NcoI CCATGG 1 cut(s) 459
NdeII GATC 2 cut(s) 683, 876
NlaIII CATG 5 cut(s) 73, 308, 463, 548, 695
NlaIV GGNNCC 5 cut(s) 49, 61, 664, 673, 685
NmuCI GTSAC 1 cut(s) 640
NspI RCATGY 1 cut(s) 73
PaeI GCATGC 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 732
PaqCI CACCTGC 1 cut(s) 826
PfeI GAWTC 3 cut(s) 337, 467, 829
PflMI CCANNNNNTGG 1 cut(s) 697
PkrI GCNGC 4 cut(s) 97, 178, 198, 457
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 394, 908
PspEI GGTNACC 1 cut(s) 904
PspFI CCCAGC 1 cut(s) 678
PspGI CCWGG 2 cut(s) 394, 908
PspN4I GGNNCC 5 cut(s) 49, 61, 664, 673, 685
PspPI GGNCC 3 cut(s) 59, 378, 935
PspXI VCTCGAGB 1 cut(s) 732
PstI CTGCAG 1 cut(s) 837
PstNI CAGNNNCTG 2 cut(s) 202, 832
PsuI RGATCY 1 cut(s) 683
PvuII CAGCTG 2 cut(s) 176, 678
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 228, 798
SatI GCNGC 4 cut(s) 96, 177, 197, 456
Sau3AI GATC 2 cut(s) 683, 876
Sau96I GGNCC 3 cut(s) 59, 378, 935
SchI GAGTC 1 cut(s) 510
ScrFI CCNGG 2 cut(s) 396, 910
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 833
Sfr274I CTCGAG 1 cut(s) 732
SinI GGWCC 1 cut(s) 935
SlaI CTCGAG 1 cut(s) 732
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 5 cut(s) 137, 227, 320, 332, 732
SmoI CTYRAG 5 cut(s) 137, 227, 320, 332, 732
SphI GCATGC 1 cut(s) 73
Sse9I AATT 5 cut(s) 344, 401, 495, 508, 956
StyD4I CCNGG 2 cut(s) 394, 908
StyI CCWWGG 2 cut(s) 459, 666
TaaI ACNGT 1 cut(s) 745
TaiI ACGT 1 cut(s) 426
TaqI TCGA 1 cut(s) 733
TaqII GACCGA 1 cut(s) 553
TasI AATT 5 cut(s) 344, 401, 495, 508, 956
TfiI GAWTC 3 cut(s) 337, 467, 829
Tru1I TTAA 2 cut(s) 228, 798
Tru9I TTAA 2 cut(s) 228, 798
TscAI CASTG 4 cut(s) 61, 380, 391, 420
TseFI GTSAC 1 cut(s) 640
TseI GCWGC 4 cut(s) 95, 176, 196, 455
Tsp45I GTSAC 1 cut(s) 640
TspDTI ATGAA 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 948
TspRI CASTG 4 cut(s) 61, 380, 391, 420
Van91I CCANNNNNTGG 1 cut(s) 697
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 935
XapI RAATTY 1 cut(s) 401
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 2 cut(s) 694, 916
XhoI CTCGAG 1 cut(s) 732
XmiI GTMKAC 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.