Rorug07G0228800

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
20954992 .. 20959113
4122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0228800.1

Sequence Viewer

Length: 813 bp
ATGGCCTGCAGAGGGTGCTTGGAGTGCCTATTGAAGCTATTGAACTTTATATTGACCCTCGTTGGGTTGGCCATTGTGGGTTATGGGATCTACTTGCTGGTAGAATACATGAAAGTAGCCGACGGTGCCAATATGCATTCACCTGTGGGTGAAACTGATGCTCTGATACAGCTTGGCCGCCCTATGCTCACGGCTGTGTCTCTTTCTTCTAATTTTTTTGACAAGTTGCCAAAAGCCTGGTTCATATACTTGTTTATTGGGGTTGGAGTCATTATATTTGTCATCTCTTGTTTCGGTTGCATCGGAATTGTAACACGGAATGGCTGCTGCTTGAGTTGTTATTCGGTGTTGTTGATCCTTTTGATCTTGGTAGAGCTGGCTGCTGCAGCCTTTATATTCTTTGACAAAAGCTGGCAAACCGAAATCCCGACGGATGCAACTGGAGATTTTGATATGATATATGAGTTTCTGGACACGCACTGGAATATTGTCAAATGGGTTGTTCTTGGAGCTGTTATCTTTGAGGCTCTAATGTTCTTGCTAGCCCTCGGAGTTAGAGCTGTAAATAGACCAGTGGAGTATGATAGTGATGAAGAGCCATTGATCGACAGGCCGCCACCGGTTCCAGCAACTGGTGTACCTGTTGCTGGGCCCAGTAAGCGTGCAATCAGAAATGATGCTTGGAGTGCACGCATGAGGGAAAAGTATGGGCTCGACACATCTTTGTATCCATATGACCCATCCGATTCAAGCAGGTTCCAGCAACCTCCAGCTCAGCCACAAGAAGAAAGGAAGCGCTGCATCATCATGTGA

Protein Analysis

270

Amino Acids

30.05

Weight (kDa)

5.02

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 8 - 138 4.1e-17 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 744
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 632
AciI CCGC 2 cut(s) 178, 614
AclWI GGATC 2 cut(s) 95, 349
AcoI YGGCCR 2 cut(s) 69, 175
AfaI GTAC 1 cut(s) 639
AfeI AGCGCT 1 cut(s) 797
AfiI CCNNNNNNNGG 4 cut(s) 12, 63, 632, 647
AgeI ACCGGT 1 cut(s) 619
AgsI TTSAA 3 cut(s) 34, 43, 750
AjnI CCWGG 1 cut(s) 236
AjuI GAANNNNNNNTTGG 2 cut(s) 664, 696
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 7 cut(s) 37, 172, 376, 411, 512, 560, 773
AluI AGCT 7 cut(s) 37, 172, 376, 411, 512, 560, 773
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 1 cut(s) 204
Alw44I GTGCAC 1 cut(s) 687
AlwI GGATC 2 cut(s) 95, 349
AlwNI CAGNNNCTG 1 cut(s) 632
Aor51HI AGCGCT 1 cut(s) 797
AoxI GGCC 5 cut(s) 3, 69, 175, 611, 650
ApaI GGGCCC 1 cut(s) 654
ApaLI GTGCAC 1 cut(s) 687
ApeKI GCWGC 6 cut(s) 324, 327, 380, 383, 386, 798
AsiGI ACCGGT 1 cut(s) 619
AspLEI GCGC 1 cut(s) 798
AspS9I GGNCC 2 cut(s) 650, 651
AsuHPI GGTGA 2 cut(s) 132, 161
AsuNHI GCTAGC 1 cut(s) 541
BaeGI GKGCMC 2 cut(s) 654, 691
BaeI ACNNNNGTAYC 2 cut(s) 621, 654
BalI TGGCCA 1 cut(s) 71
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 2 cut(s) 654, 714
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 6 cut(s) 311, 314, 367, 370, 398, 785
BccI CCATC 1 cut(s) 748
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 238
BciVI GTATCC 1 cut(s) 738
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 1 cut(s) 542
BfmI CTRYAG 2 cut(s) 7, 384
BfoI RGCGCY 1 cut(s) 799
BfuAI ACCTGC 1 cut(s) 744
BfuI GTATCC 1 cut(s) 738
BisI GCNGC 8 cut(s) 178, 325, 328, 381, 384, 387, 614, 799
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 8 cut(s) 179, 326, 329, 382, 385, 388, 615, 800
Bme1390I CCNGG 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 650, 651
BmiI GGNNCC 4 cut(s) 127, 624, 652, 758
BmrFI CCNGG 1 cut(s) 238
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 4 cut(s) 148, 309, 424, 667
BmtI GCTAGC 1 cut(s) 545
BmuI ACTGGG 1 cut(s) 648
BpmI CTGGAG 2 cut(s) 462, 753
Bpu1102I GCTNAGC 1 cut(s) 774
BpuEI CTTGAG 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 547
BsaWI WCCGGW 1 cut(s) 619
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 63, 632, 647
Bse118I RCCGGY 1 cut(s) 619
Bse1I ACTGG 5 cut(s) 445, 485, 572, 637, 654
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 2 cut(s) 439, 740
BseLI CCNNNNNNNGG 4 cut(s) 12, 63, 632, 647
BseMII CTCAG 1 cut(s) 788
BseNI ACTGG 5 cut(s) 445, 485, 572, 637, 654
BseSI GKGCMC 2 cut(s) 654, 691
BseXI GCAGC 6 cut(s) 311, 314, 367, 370, 398, 785
BseYI CCCAGC 1 cut(s) 647
BshFI GGCC 5 cut(s) 5, 71, 177, 613, 652
BshNI GGYRCC 1 cut(s) 125
BshTI ACCGGT 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 691
BsiSI CCGG 1 cut(s) 620
BslI CCNNNNNNNGG 4 cut(s) 12, 63, 632, 647
BsmAI GTCTC 1 cut(s) 204
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 5 cut(s) 5, 71, 177, 613, 652
Bsp120I GGGCCC 1 cut(s) 650
Bsp1286I GDGCHC 3 cut(s) 654, 691, 714
Bsp143I GATC 4 cut(s) 87, 354, 363, 603
Bsp1720I GCTNAGC 1 cut(s) 774
BspACI CCGC 2 cut(s) 178, 614
BspANI GGCC 5 cut(s) 5, 71, 177, 613, 652
BspCNI CTCAG 1 cut(s) 787
BspLI GGNNCC 4 cut(s) 127, 624, 652, 758
BspMAI CTGCAG 2 cut(s) 11, 388
BspMI ACCTGC 1 cut(s) 744
BspOI GCTAGC 1 cut(s) 545
BspPI GGATC 2 cut(s) 95, 349
BspQI GCTCTTC 1 cut(s) 588
BspT107I GGYRCC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 619
BsrI ACTGG 5 cut(s) 445, 485, 572, 637, 654
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 4 cut(s) 87, 354, 363, 603
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 588
BstAPI GCANNNNNTGC 1 cut(s) 15
BstC8I GCNNGC 6 cut(s) 7, 378, 413, 543, 663, 691
BstDEI CTNAG 1 cut(s) 774
BstF5I GGATG 2 cut(s) 439, 740
BstH2I RGCGCY 1 cut(s) 799
BstHHI GCGC 1 cut(s) 798
BstKTI GATC 4 cut(s) 90, 357, 366, 606
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 4 cut(s) 87, 354, 363, 603
BstMWI GCNNNNNNNGC 6 cut(s) 15, 24, 125, 386, 658, 686
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 2 cut(s) 7, 384
BstSLI GKGCMC 2 cut(s) 654, 691
BstV1I GCAGC 6 cut(s) 311, 314, 367, 370, 398, 785
BstX2I RGATCY 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 237
BstYI RGATCY 1 cut(s) 87
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 5 cut(s) 5, 71, 177, 613, 652
BtsCI GGATG 2 cut(s) 439, 740
BtsIMutI CAGTG 2 cut(s) 478, 579
BveI ACCTGC 1 cut(s) 744
Cac8I GCNNGC 6 cut(s) 7, 378, 413, 543, 663, 691
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 1 cut(s) 798
Cfr10I RCCGGY 1 cut(s) 619
Cfr13I GGNCC 2 cut(s) 650, 651
Csp6I GTAC 1 cut(s) 638
CspAI ACCGGT 1 cut(s) 619
CviAII CATG 3 cut(s) 109, 694, 808
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 1 cut(s) 774
DpnI GATC 4 cut(s) 89, 356, 365, 605
DpnII GATC 4 cut(s) 87, 354, 363, 603
EaeI YGGCCR 2 cut(s) 69, 175
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
Eco24I GRGCYC 2 cut(s) 654, 714
Eco47III AGCGCT 1 cut(s) 797
EcoRII CCWGG 1 cut(s) 236
EcoT22I ATGCAT 1 cut(s) 138
EcoT38I GRGCYC 2 cut(s) 654, 714
FaeI CATG 3 cut(s) 112, 697, 811
FatI CATG 3 cut(s) 108, 693, 807
FauNDI CATATG 1 cut(s) 733
Fnu4HI GCNGC 8 cut(s) 178, 325, 328, 381, 384, 387, 614, 799
FokI GGATG 2 cut(s) 446, 727
FriOI GRGCYC 2 cut(s) 654, 714
Fsp4HI GCNGC 8 cut(s) 178, 325, 328, 381, 384, 387, 614, 799
FspBI CTAG 1 cut(s) 542
GlaI GCGC 1 cut(s) 797
GluI GCNGC 8 cut(s) 178, 325, 328, 381, 384, 387, 614, 799
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 2 cut(s) 462, 753
HaeII RGCGCY 1 cut(s) 799
HaeIII GGCC 5 cut(s) 5, 71, 177, 613, 652
HapII CCGG 1 cut(s) 620
HhaI GCGC 1 cut(s) 798
Hin1II CATG 3 cut(s) 112, 697, 811
Hin6I GCGC 1 cut(s) 796
HinP1I GCGC 1 cut(s) 796
HinfI GANTC 2 cut(s) 267, 746
HpaII CCGG 1 cut(s) 620
HphI GGTGA 2 cut(s) 132, 161
Hpy166II GTNNAC 2 cut(s) 638, 689
Hpy188I TCNGA 5 cut(s) 165, 305, 551, 671, 745
Hpy188III TCNNGA 2 cut(s) 427, 470
Hpy8I GTNNAC 2 cut(s) 638, 689
Hpy99I CGWCG 2 cut(s) 125, 433
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 8 cut(s) 9, 136, 300, 386, 437, 665, 689, 801
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 24, 125, 386, 658, 686
HpyF3I CTNAG 1 cut(s) 774
Hsp92II CATG 3 cut(s) 112, 697, 811
HspAI GCGC 1 cut(s) 796
Kzo9I GATC 4 cut(s) 87, 354, 363, 603
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 1 cut(s) 509
Lsp1109I GCAGC 6 cut(s) 311, 314, 367, 370, 398, 785
LweI GCATC 4 cut(s) 148, 309, 424, 667
MaeI CTAG 1 cut(s) 542
MaeIII GTNAC 1 cut(s) 310
MalI GATC 4 cut(s) 89, 356, 365, 605
MboI GATC 4 cut(s) 87, 354, 363, 603
MboII GAAGA 3 cut(s) 198, 605, 797
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 3 cut(s) 654, 691, 714
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 2 cut(s) 211, 306
MluNI TGGCCA 1 cut(s) 71
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 6 cut(s) 5, 68, 517, 557, 690, 777
Mox20I TGGCCA 1 cut(s) 71
Mph1103I ATGCAT 1 cut(s) 138
MscI TGGCCA 1 cut(s) 71
MslI CAYNNNNRTG 2 cut(s) 194, 806
Msp20I TGGCCA 1 cut(s) 71
MspI CCGG 1 cut(s) 620
MspR9I CCNGG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 6 cut(s) 15, 24, 125, 386, 658, 686
NdeI CATATG 1 cut(s) 733
NdeII GATC 4 cut(s) 87, 354, 363, 603
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 3 cut(s) 112, 697, 811
NlaIV GGNNCC 4 cut(s) 127, 624, 652, 758
NsiI ATGCAT 1 cut(s) 138
OliI CACNNNNGTG 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 588
PctI GAATGC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 746
PflMI CCANNNNNTGG 1 cut(s) 632
PinAI ACCGGT 1 cut(s) 619
PkrI GCNGC 8 cut(s) 179, 326, 329, 382, 385, 388, 615, 800
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 4 cut(s) 127, 624, 652, 758
PspOMI GGGCCC 1 cut(s) 650
PspPI GGNCC 2 cut(s) 650, 651
PstI CTGCAG 2 cut(s) 11, 388
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 87
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
RseI CAYNNNNRTG 2 cut(s) 194, 806
SapI GCTCTTC 1 cut(s) 588
SatI GCNGC 8 cut(s) 178, 325, 328, 381, 384, 387, 614, 799
Sau3AI GATC 4 cut(s) 87, 354, 363, 603
Sau96I GGNCC 2 cut(s) 650, 651
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 3 cut(s) 654, 691, 714
SfaNI GCATC 4 cut(s) 148, 309, 424, 667
SfcI CTRYAG 2 cut(s) 7, 384
SmiMI CAYNNNNRTG 2 cut(s) 194, 806
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 2 cut(s) 211, 306
SsiI CCGC 2 cut(s) 178, 614
SspI AATATT 1 cut(s) 487
SspMI CTAG 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 606, 714
TasI AATT 2 cut(s) 211, 306
TauI GCSGC 2 cut(s) 180, 616
TfiI GAWTC 1 cut(s) 746
TscAI CASTG 2 cut(s) 485, 579
TseI GCWGC 6 cut(s) 324, 327, 380, 383, 386, 798
TspDTI ATGAA 3 cut(s) 125, 232, 606
TspGWI ACGGA 2 cut(s) 331, 446
TspRI CASTG 2 cut(s) 485, 579
Van91I CCANNNNNTGG 1 cut(s) 632
VneI GTGCAC 1 cut(s) 687
XspI CTAG 1 cut(s) 542
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.