Rroxscaffold_1G00055420

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000205
Physical Location & Seq
Forward (+)
76840740 .. 76841677
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055420.1

Sequence Viewer

Length: 510 bp
ATGGAAGAAGCTCAGAGACTTGGCCTCACCAAATCCATTGGAATCAGTAATTTCTCTACCAAGAAGACTCAGAATATGCTCTCTTTTGCTACTATTCCTCCTTCAGTCAACCAAGTTGAGATGAGCCCATTTTGGCAACAAAAGAAGCTCAGAGACTTCTGCAAGGCCAACGGTATAGTTGTGACTGCCTTCTCCCCATTGGGTGCCGTAGGAGCCAGTTGGGGTACCAATCATGTTCTCGAAAGCAAAGTGCTCAATGAAATCGCCGAGGCTCGGGGAAAGACTGTTGTTCAGATGGGTTTATCAGGTAGGAGCAACTCTTGCAGTGAAGAGCTACAACAAGGAGAGGTTGAGCAGAATGTGCAGGTGTTCGACTGGGAACTAACAGAAGAGGATCTTGAGAAGATAAATCAAATCCCACAGCGCAAAATGATGGTTCGAGAAGAAGAGTTGGTTACGGCTACCGGACCATACAAGTCCCTTGATGAGTTATGGGATGGAGAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

169

Amino Acids

18.94

Weight (kDa)

4.86

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 1 - 138 6.4e-17 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 355
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 2 cut(s) 203, 224
AclWI GGATC 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 273
AluBI AGCT 3 cut(s) 11, 148, 334
AluI AGCT 3 cut(s) 11, 148, 334
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 10, 147
AlwI GGATC 1 cut(s) 402
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 2 cut(s) 22, 165
Asp718I GGTACC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 467
BanI GGYRCC 2 cut(s) 203, 224
BanII GRGCYC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 255
BccI CCATC 3 cut(s) 289, 427, 491
BceAI ACGGC 2 cut(s) 191, 474
BcoDI GTCTC 2 cut(s) 10, 147
BfuAI ACCTGC 1 cut(s) 355
Bme18I GGWCC 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 3 cut(s) 205, 214, 226
BmrI ACTGGG 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 2 cut(s) 216, 380
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 3 cut(s) 26, 83, 163
BseNI ACTGG 2 cut(s) 216, 380
BsgI GTGCAG 1 cut(s) 383
BshFI GGCC 2 cut(s) 24, 167
BshNI GGYRCC 2 cut(s) 203, 224
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 2 cut(s) 10, 147
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 2 cut(s) 24, 167
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 128, 255
Bsp143I GATC 1 cut(s) 394
BspANI GGCC 2 cut(s) 24, 167
BspCNI CTCAG 3 cut(s) 25, 82, 162
BspLI GGNNCC 3 cut(s) 205, 214, 226
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 402
BspQI GCTCTTC 1 cut(s) 324
BspT107I GGYRCC 2 cut(s) 203, 224
BsrI ACTGG 2 cut(s) 216, 380
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 1 cut(s) 394
Bst4CI ACNGT 2 cut(s) 173, 286
Bst6I CTCTTC 3 cut(s) 324, 384, 441
BstAPI GCANNNNNTGC 2 cut(s) 321, 361
BstDEI CTNAG 3 cut(s) 12, 69, 149
BstF5I GGATG 1 cut(s) 502
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 2 cut(s) 10, 147
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 3 cut(s) 212, 321, 361
BstV2I GAAGAC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 2 cut(s) 24, 167
BtsCI GGATG 1 cut(s) 502
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
BveI ACCTGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 233
CviJI RGCY 9 cut(s) 11, 24, 126, 148, 167, 215, 272, 334, 461
CviKI_1 RGCY 9 cut(s) 11, 24, 126, 148, 167, 215, 272, 334, 461
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 3 cut(s) 12, 69, 149
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
Eam1104I CTCTTC 3 cut(s) 324, 384, 441
EarI CTCTTC 3 cut(s) 324, 384, 441
Eco24I GRGCYC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 1 cut(s) 236
FaiI YATR 5 cut(s) 77, 176, 234, 472, 493
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 1 cut(s) 463
FatI CATG 1 cut(s) 232
FriOI GRGCYC 1 cut(s) 128
GlaI GCGC 1 cut(s) 425
HaeIII GGCC 2 cut(s) 24, 167
HapII CCGG 1 cut(s) 465
HhaI GCGC 1 cut(s) 426
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 2 cut(s) 42, 67
HpaII CCGG 1 cut(s) 465
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 4 cut(s) 15, 72, 152, 294
Hpy188III TCNNGA 3 cut(s) 239, 398, 440
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 111, 199
HpyCH4III ACNGT 2 cut(s) 173, 286
HpyCH4V TGCA 3 cut(s) 162, 324, 364
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 321, 361
HpyF3I CTNAG 3 cut(s) 12, 69, 149
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 1 cut(s) 424
KpnI GGTACC 1 cut(s) 228
Kzo9I GATC 1 cut(s) 394
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 2 cut(s) 212, 312
LpnPI CCDG 5 cut(s) 229, 291, 350, 361, 478
MaeIII GTNAC 2 cut(s) 181, 454
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 7 cut(s) 17, 76, 341, 401, 415, 455, 458
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 128, 255
MluCI AATT 1 cut(s) 49
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 5 cut(s) 35, 108, 262, 340, 385
MseI TTAA 1 cut(s) 508
MspI CCGG 1 cut(s) 465
MwoI GCNNNNNNNGC 3 cut(s) 212, 321, 361
NdeII GATC 1 cut(s) 394
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 3 cut(s) 205, 214, 226
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 181
PaqCI CACCTGC 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 42
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspN4I GGNNCC 3 cut(s) 205, 214, 226
PspPI GGNCC 1 cut(s) 467
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 508
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 1 cut(s) 61
SduI GDGCHC 2 cut(s) 128, 255
SetI ASST 6 cut(s) 13, 150, 310, 336, 351, 369
SinI GGWCC 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 1 cut(s) 49
TaaI ACNGT 2 cut(s) 173, 286
TaqI TCGA 3 cut(s) 240, 372, 439
TasI AATT 1 cut(s) 49
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 508
Tru9I TTAA 1 cut(s) 508
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.