Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

68340882 .. 68342141

Gene Structure 1260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG449100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAAAGCATAAGCATTCCGGAGTTGCCACTGCTAGCCTCCCCAAGTAGTTACAGTATTCCGGTGCAAGGTCTAGGAACGGCTGTATATCCTTTTCCTGCCTCTGAACAAAGTAGAGAAAAAGAAGCCATTCTCAGTGCAATCAAAATTGGTTACAGACATTTTGATACGGCAGCGGCTTACCAGACTGAGCAAGTTCTTGGTGAAGCTATCGGCGAAGCTATTTCTCTTGGCCTCATCAAATCCCGGGATGAACTTTTTGTTACTTCCAAGCTTTGGTGCTGTGATGCACACCCTCACTGTGTCCTCCCTGCCATTCAAAACACCCTCAAGAATCTGAGATTGGAGTACCTTAACCTTTATCTGATTCATTGGCCTGTGAGTTTGAAGACAAGAAGCTATGACTTTCCTGTTAACAAAGAGCACCTTCTTCCTATAGACTTTAAGGGGGTGTGGGAAGCCATGGAAGAGTGTCAGAAGCTAGGCCTCACCAAGTCCATTGGAGTCTGCAATTTTTCATGCAAAAAGATCGAAATCTTGCTTGCCACTGCCAAAATCCCTCCTGCAGTCAATCAAGCGGAGATGAATCCAGTATGGCAGCAGAAAAAGTTGAGAGAATTGTGTAAGAGAAAGGGTATAGTTGTCACGGCCTACTCTCCTTTGGGGGGAAAAGGAACACCTTGGGGATCAAACGCCGTAATGGAATGTGAAGTCCTCAAACAGATTGCAGATGCAAAAGGAAAATCTCTTGCTCAGGTTTGTTTGAGGTGGCTTTATGAGCAAGGGGTGAGTTTTGTGGTGAAGAGCTTCAATAAGAACAGGATTAAAGAAAATGTGGAAATATTCACCTGGGAGCTTAATCTTGAGGAGCTGGAAAAGATCGATCAAATCCCGCAAAAAAGAGGATATCTCGCATTTGAATTCATAGCAGATCAAGGCCCTTACAAGTCTCCCGAAGAGTTTTGGGATGGAGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

326

Amino Acids

36.74

Weight (kDa)

6.27

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	34 - 297	5.5e-53	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	3 cut(s)	176, 578, 893
AclWI	GGATC	1 cut(s)	694
AcsI	RAATTY	1 cut(s)	920
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	3 cut(s)	68, 276, 665
AgsI	TTSAA	4 cut(s)	320, 388, 811, 920
AjnI	CCWGG	1 cut(s)	848
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	8 cut(s)	209, 221, 274, 399, 481, 807, 856, 871
AluI	AGCT	8 cut(s)	209, 221, 274, 399, 481, 807, 856, 871
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	954
AlwI	GGATC	1 cut(s)	694
Ama87I	CYCGRG	1 cut(s)	246
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	5 cut(s)	232, 374, 484, 648, 937
ApeKI	GCWGC	2 cut(s)	173, 598
ApoI	RAATTY	1 cut(s)	920
Asp700I	GAANNNNTTC	2 cut(s)	129, 806
AspS9I	GGNCC	1 cut(s)	938
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	5 cut(s)	215, 481, 799, 811, 838
AsuNHI	GCTAGC	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	185, 610
BccI	CCATC	1 cut(s)	962
BceAI	ACGGC	4 cut(s)	96, 186, 663, 680
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BciT130I	CCWGG	1 cut(s)	850
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	1 cut(s)	954
BfaI	CTAG	3 cut(s)	35, 74, 482
BfmI	CTRYAG	2 cut(s)	435, 564
BisI	GCNGC	3 cut(s)	174, 177, 599
BlsI	GCNGC	3 cut(s)	175, 178, 600
Bme1390I	CCNGG	3 cut(s)	247, 248, 850
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	938
BmrFI	CCNGG	3 cut(s)	247, 248, 850
BmsI	GCATC	2 cut(s)	277, 721
BmtI	GCTAGC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	395
BplI	GAGNNNNNCTC	2 cut(s)	894, 926
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	2 cut(s)	314, 884
BpuMI	CCSGG	2 cut(s)	247, 248
Bsa29I	ATCGAT	1 cut(s)	882
BsaBI	GATNNNNATC	1 cut(s)	533
BsaJI	CCNNGG	4 cut(s)	246, 462, 680, 849
BsaWI	WCCGGW	2 cut(s)	19, 61
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 276, 665
Bse1I	ACTGG	1 cut(s)	590
Bse8I	GATNNNNATC	1 cut(s)	533
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	850
BseCI	ATCGAT	1 cut(s)	882
BseDI	CCNNGG	4 cut(s)	246, 462, 680, 849
BseGI	GGATG	2 cut(s)	256, 973
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	3 cut(s)	68, 276, 665
BseMII	CTCAG	4 cut(s)	148, 180, 329, 767
BseNI	ACTGG	1 cut(s)	590
BseRI	GAGGAG	1 cut(s)	881
BseXI	GCAGC	2 cut(s)	185, 610
BshFI	GGCC	5 cut(s)	234, 376, 486, 650, 939
BshVI	ATCGAT	1 cut(s)	882
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	20, 62, 247
BslI	CCNNNNNNNGG	3 cut(s)	68, 276, 665
BsmAI	GTCTC	1 cut(s)	954
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	5 cut(s)	234, 376, 486, 650, 939
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	5 cut(s)	528, 686, 879, 883, 931
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	3 cut(s)	176, 578, 893
BspANI	GGCC	5 cut(s)	234, 376, 486, 650, 939
BspCNI	CTCAG	4 cut(s)	147, 181, 330, 766
BspDI	ATCGAT	1 cut(s)	882
BspEI	TCCGGA	1 cut(s)	19
BspMAI	CTGCAG	1 cut(s)	568
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	694
BspQI	GCTCTTC	1 cut(s)	797
BsrI	ACTGG	1 cut(s)	590
BssECI	CCNNGG	4 cut(s)	246, 462, 680, 849
BssMI	GATC	5 cut(s)	528, 686, 879, 883, 931
BssT1I	CCWWGG	2 cut(s)	462, 680
Bst2UI	CCWGG	1 cut(s)	850
Bst4CI	ACNGT	2 cut(s)	56, 302
Bst6I	CTCTTC	3 cut(s)	462, 797, 951
BstC8I	GCNNGC	2 cut(s)	36, 543
BstDEI	CTNAG	4 cut(s)	134, 189, 338, 753
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	256, 973
BstKTI	GATC	5 cut(s)	531, 689, 882, 886, 934
BstMAI	GTCTC	1 cut(s)	954
BstMBI	GATC	5 cut(s)	528, 686, 879, 883, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	778
BstNI	CCWGG	1 cut(s)	850
BstSCI	CCNGG	3 cut(s)	245, 246, 848
BstSFI	CTRYAG	2 cut(s)	435, 564
BstV1I	GCAGC	2 cut(s)	185, 610
BstV2I	GAAGAC	1 cut(s)	395
Bsu15I	ATCGAT	1 cut(s)	882
BsuRI	GGCC	5 cut(s)	234, 376, 486, 650, 939
BsuTUI	ATCGAT	1 cut(s)	882
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	256, 973
BtsI	GCAGTG	2 cut(s)	29, 546
BtsIMutI	CAGTG	4 cut(s)	29, 142, 298, 546
Cac8I	GCNNGC	2 cut(s)	36, 543
Cfr13I	GGNCC	1 cut(s)	938
Cfr9I	CCCGGG	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	882
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	2 cut(s)	463, 519
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	4 cut(s)	134, 189, 338, 753
DpnI	GATC	5 cut(s)	530, 688, 881, 885, 933
DpnII	GATC	5 cut(s)	528, 686, 879, 883, 931
Eam1104I	CTCTTC	3 cut(s)	462, 797, 951
EarI	CTCTTC	3 cut(s)	462, 797, 951
Eco130I	CCWWGG	2 cut(s)	462, 680
Eco147I	AGGCCT	1 cut(s)	486
Eco32I	GATATC	1 cut(s)	908
Eco88I	CYCGRG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRI	GAATTC	1 cut(s)	920
EcoRII	CCWGG	1 cut(s)	848
EcoRV	GATATC	1 cut(s)	908
EcoT14I	CCWWGG	2 cut(s)	462, 680
ErhI	CCWWGG	2 cut(s)	462, 680
FaeI	CATG	2 cut(s)	466, 522
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	2 cut(s)	462, 518
FauI	CCCGC	1 cut(s)	900
Fnu4HI	GCNGC	3 cut(s)	174, 177, 599
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	3 cut(s)	174, 177, 599
FspBI	CTAG	3 cut(s)	35, 74, 482
GluI	GCNGC	3 cut(s)	174, 177, 599
HaeIII	GGCC	5 cut(s)	234, 376, 486, 650, 939
HapII	CCGG	3 cut(s)	20, 62, 247
Hin1II	CATG	2 cut(s)	466, 522
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	4 cut(s)	334, 367, 504, 586
HpaI	GTTAAC	1 cut(s)	415
HpaII	CCGG	3 cut(s)	20, 62, 247
HphI	GGTGA	5 cut(s)	215, 481, 799, 811, 838
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	4 cut(s)	106, 339, 366, 477
Hpy188III	TCNNGA	4 cut(s)	20, 331, 863, 953
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	2 cut(s)	56, 302
HpyCH4V	TGCA	8 cut(s)	67, 140, 290, 510, 522, 566, 728, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	778
HpyF3I	CTNAG	4 cut(s)	134, 189, 338, 753
Hsp92II	CATG	2 cut(s)	466, 522
Kpn2I	TCCGGA	1 cut(s)	19
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	5 cut(s)	528, 686, 879, 883, 931
LguI	GCTCTTC	1 cut(s)	797
LmnI	GCTCC	2 cut(s)	853, 868
Lsp1109I	GCAGC	2 cut(s)	185, 610
LweI	GCATC	2 cut(s)	277, 721
MaeI	CTAG	3 cut(s)	35, 74, 482
MaeIII	GTNAC	4 cut(s)	50, 152, 262, 643
MalI	GATC	5 cut(s)	530, 688, 881, 885, 933
MboI	GATC	5 cut(s)	528, 686, 879, 883, 931
MboII	GAAGA	5 cut(s)	400, 422, 479, 814, 968
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	4 cut(s)	147, 511, 617, 920
MlyI	GAGTC	1 cut(s)	513
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	2 cut(s)	129, 806
MseI	TTAA	6 cut(s)	354, 414, 444, 825, 858, 979
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	3 cut(s)	20, 62, 247
MspR9I	CCNGG	3 cut(s)	247, 248, 850
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	850
MwoI	GCNNNNNNNGC	1 cut(s)	778
NciI	CCSGG	2 cut(s)	247, 248
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	5 cut(s)	528, 686, 879, 883, 931
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	466, 522
NmuCI	GTSAC	1 cut(s)	643
PceI	AGGCCT	1 cut(s)	486
PciSI	GCTCTTC	1 cut(s)	797
PctI	GAATGC	1 cut(s)	15
PdmI	GAANNNNTTC	2 cut(s)	129, 806
PfeI	GAWTC	3 cut(s)	334, 367, 586
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	175, 178, 600
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	848
PspPI	GGNCC	1 cut(s)	938
PstI	CTGCAG	1 cut(s)	568
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	797
SaqAI	TTAA	6 cut(s)	354, 414, 444, 825, 858, 979
SatI	GCNGC	3 cut(s)	174, 177, 599
Sau3AI	GATC	5 cut(s)	528, 686, 879, 883, 931
Sau96I	GGNCC	1 cut(s)	938
SchI	GAGTC	1 cut(s)	513
ScrFI	CCNGG	3 cut(s)	247, 248, 850
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	2 cut(s)	277, 721
SfcI	CTRYAG	2 cut(s)	435, 564
SmaI	CCCGGG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	329, 863
SmoI	CTYRAG	2 cut(s)	329, 863
Sse9I	AATT	4 cut(s)	147, 511, 617, 920
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	3 cut(s)	176, 578, 893
SspI	AATATT	1 cut(s)	843
SspMI	CTAG	3 cut(s)	35, 74, 482
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	3 cut(s)	245, 246, 848
StyI	CCWWGG	2 cut(s)	462, 680
TaaI	ACNGT	2 cut(s)	56, 302
TaqI	TCGA	2 cut(s)	531, 882
TasI	AATT	4 cut(s)	147, 511, 617, 920
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	3 cut(s)	334, 367, 586
Tru1I	TTAA	6 cut(s)	354, 414, 444, 825, 858, 979
Tru9I	TTAA	6 cut(s)	354, 414, 444, 825, 858, 979
TscAI	CASTG	4 cut(s)	36, 142, 305, 553
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	2 cut(s)	173, 598
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	5 cut(s)	267, 359, 507, 599, 913
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	4 cut(s)	36, 142, 305, 553
Van91I	CCANNNNNTGG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	920
XmaI	CCCGGG	1 cut(s)	246
XmnI	GAANNNNTTC	2 cut(s)	129, 806
XspI	CTAG	3 cut(s)	35, 74, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.