Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

57641769 .. 57642584

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG434600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCTGTTAAGAAAGAGGATCTTCTTCCTATGGACTTCAAGTCTGTGTGGGAAGCAATGGAAGAGTGCCAGAAGCTAGGCCTCACCAAGGCAATAGGAGTCAGCAATTTCTCATGCAAAAAGATAGAAATCTTGCTTTCCACTGCAATAATCCCTCCTGCTGTCAACCAAGTGGAGATGAACCCGCTATGGCAGCAGAAAAAGCTGAAAGAGTTTTGTGAAAGAAAAGGTATAATCATCACTGCCTACTCTCCGTTGGGGGCAAAAGCGACACCGTGGGGAACAAATGGAGTTATGGAATGTGAGACTCTCAAACAAATTGCTGAAACAAAAAGGAAAACTCTTGCTCAGGTTTGTCTGAGATGGGCATATGAGCAAGGGGTGAGTGTGGTGGTGAAGAGCTTTAACAAGGAGAGGATTAAGGAAAATATGGACATATTTGAATGGGAGTTGCAGCCTGAGGAAGTTGACAAGATCAATCAAATTCCACAAAAGAGAGCATGCCAAGCATCCGACTTCGTTTCAGATAATGGCCCTTTCAAGTCTCTTGAAGAGTTTTGGGATGGAGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

191

Amino Acids

21.83

Weight (kDa)

5.49

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	13 - 162	5.7e-33	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	483
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	4 cut(s)	40, 443, 541, 551
AhdI	GACNNNNNGTC	1 cut(s)	40
AluBI	AGCT	3 cut(s)	76, 205, 402
AluI	AGCT	3 cut(s)	76, 205, 402
Alw26I	GTCTC	2 cut(s)	299, 549
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	2 cut(s)	79, 532
ApeKI	GCWGC	2 cut(s)	193, 454
ApoI	RAATTY	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	3 cut(s)	76, 394, 406
AxyI	CCTNAGG	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	205, 466
BccI	CCATC	2 cut(s)	357, 557
BcoDI	GTCTC	2 cut(s)	299, 549
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	2 cut(s)	194, 455
BlsI	GCNGC	2 cut(s)	195, 456
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	533
BmsI	GCATC	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	87, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse21I	CCTNAGG	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	87, 275
BseGI	GGATG	2 cut(s)	509, 568
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	3 cut(s)	350, 362, 450
BseXI	GCAGC	2 cut(s)	205, 466
BshFI	GGCC	2 cut(s)	81, 534
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	2 cut(s)	299, 549
BsnI	GGCC	2 cut(s)	81, 534
Bsp143I	GATC	2 cut(s)	19, 474
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	2 cut(s)	81, 534
BspCNI	CTCAG	3 cut(s)	351, 361, 451
BspPI	GGATC	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	87, 275
BssMI	GATC	2 cut(s)	19, 474
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	3 cut(s)	57, 392, 546
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	3 cut(s)	348, 359, 459
BstDSI	CCRYGG	1 cut(s)	275
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	509, 568
BstKTI	GATC	2 cut(s)	22, 477
BstMAI	GTCTC	2 cut(s)	299, 549
BstMBI	GATC	2 cut(s)	19, 474
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 202, 506
BstNSI	RCATGY	1 cut(s)	504
BstV1I	GCAGC	2 cut(s)	205, 466
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
Bsu36I	CCTNAGG	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	81, 534
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	509, 568
BtsI	GCAGTG	2 cut(s)	141, 240
BtsIMutI	CAGTG	2 cut(s)	141, 240
Cac8I	GCNNGC	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	533
CviAII	CATG	2 cut(s)	114, 501
CviJI	RGCY	6 cut(s)	76, 81, 205, 402, 457, 534
CviKI_1	RGCY	6 cut(s)	76, 81, 205, 402, 457, 534
DdeI	CTNAG	3 cut(s)	348, 359, 459
DpnI	GATC	2 cut(s)	21, 476
DpnII	GATC	2 cut(s)	19, 474
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	3 cut(s)	57, 392, 546
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	3 cut(s)	57, 392, 546
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	459
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	117, 504
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	2 cut(s)	113, 500
FauI	CCCGC	1 cut(s)	192
FauNDI	CATATG	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	194, 455
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	2 cut(s)	194, 455
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	2 cut(s)	194, 455
HaeIII	GGCC	2 cut(s)	81, 534
Hin1II	CATG	2 cut(s)	117, 504
HincII	GTYRAC	2 cut(s)	166, 469
HindII	GTYRAC	2 cut(s)	166, 469
HinfI	GANTC	2 cut(s)	99, 307
HphI	GGTGA	3 cut(s)	76, 394, 406
Hpy166II	GTNNAC	2 cut(s)	166, 469
Hpy188I	TCNGA	3 cut(s)	360, 514, 526
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	2 cut(s)	166, 469
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	117, 146, 454
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 202, 506
HpyF3I	CTNAG	3 cut(s)	348, 359, 459
Hsp92II	CATG	2 cut(s)	117, 504
Kzo9I	GATC	2 cut(s)	19, 474
LguI	GCTCTTC	1 cut(s)	392
LpnPI	CCDG	5 cut(s)	18, 83, 171, 335, 471
Lsp1109I	GCAGC	2 cut(s)	205, 466
LweI	GCATC	1 cut(s)	518
MaeI	CTAG	1 cut(s)	77
MalI	GATC	2 cut(s)	21, 476
MboI	GATC	2 cut(s)	19, 474
MboII	GAAGA	5 cut(s)	14, 17, 74, 409, 563
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	3 cut(s)	106, 318, 483
MlyI	GAGTC	2 cut(s)	108, 301
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	5 cut(s)	10, 92, 165, 408, 454
MseI	TTAA	4 cut(s)	9, 405, 420, 574
MwoI	GCNNNNNNNGC	3 cut(s)	193, 202, 506
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	2 cut(s)	19, 474
NlaIII	CATG	2 cut(s)	117, 504
NspI	RCATGY	1 cut(s)	504
PaeI	GCATGC	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	392
PkrI	GCNGC	2 cut(s)	195, 456
PleI	GAGTC	2 cut(s)	107, 301
PpsI	GAGTC	2 cut(s)	107, 301
PspPI	GGNCC	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	4 cut(s)	9, 405, 420, 574
SatI	GCNGC	2 cut(s)	194, 455
Sau3AI	GATC	2 cut(s)	19, 474
Sau96I	GGNCC	1 cut(s)	533
SchI	GAGTC	2 cut(s)	108, 301
SetI	ASST	5 cut(s)	78, 207, 232, 354, 404
SfaNI	GCATC	1 cut(s)	518
SphI	GCATGC	1 cut(s)	504
Sse9I	AATT	3 cut(s)	106, 318, 483
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	276
TasI	AATT	3 cut(s)	106, 318, 483
Tru1I	TTAA	4 cut(s)	9, 405, 420, 574
Tru9I	TTAA	4 cut(s)	9, 405, 420, 574
TscAI	CASTG	2 cut(s)	148, 247
TseI	GCWGC	2 cut(s)	193, 454
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	148, 247
XagI	CCTNNNNNAGG	1 cut(s)	86
XapI	RAATTY	1 cut(s)	483
XceI	RCATGY	1 cut(s)	504
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.