Rh4AG058500

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000205
Physical Location & Seq
Forward (+)
12226485 .. 12227959
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG058500.1

Sequence Viewer

Length: 327 bp
ATGGCAGCAGCTCATATCCCAGAGGTGGTTCTTGAATCCTCCAATGGCCGCAGGACCATGCCTGTGCTTGGCTTCGGCACAGCATCCAACAATTTACAACCAGAGGTTTTCATAGAAGCTGTTCTCGAGGCCATAAAGCTCGGTTACCGCCACTTCGACACAGCTTCCCTGTACGGCTCGGAGCAGAGTCTGGGAGTAGCCATAGCCCAAGCACTCAAACTCGGCCTCGTGGCTTCTCGAGACGAGCTCTTCATCACTTCCAAGCTTTGCGTCCCAGAGCTTCAACTCTACAATCTTGCTATGAGCGAAACCAACATAGATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

108

Amino Acids

11.68

Weight (kDa)

4.74

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 92 2.2e-10 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 49, 148
AcoI YGGCCR 1 cut(s) 46
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 2 cut(s) 25, 68
AgsI TTSAA 2 cut(s) 35, 284
AluBI AGCT 7 cut(s) 11, 119, 139, 164, 247, 265, 280
AluI AGCT 7 cut(s) 11, 119, 139, 164, 247, 265, 280
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 234
AlwNI CAGNNNCTG 1 cut(s) 190
Ama87I CYCGRG 2 cut(s) 125, 237
AoxI GGCC 3 cut(s) 46, 129, 223
ApeKI GCWGC 2 cut(s) 5, 8
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 54
AvaI CYCGRG 2 cut(s) 125, 237
AvaII GGWCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 249
BauI CACGAG 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 17, 20
BceAI ACGGC 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 325
BisI GCNGC 3 cut(s) 6, 9, 49
BlsI GCNGC 3 cut(s) 7, 10, 50
Bme18I GGWCC 1 cut(s) 54
BmeT110I CYCGRG 2 cut(s) 125, 237
BmgT120I GGNCC 1 cut(s) 54
BmsI GCATC 1 cut(s) 92
BplI GAGNNNNNCTC 2 cut(s) 231, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 68
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 25, 68
BseXI GCAGC 2 cut(s) 17, 20
BshFI GGCC 3 cut(s) 48, 131, 225
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 2 cut(s) 125, 237
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 25, 68
BsmAI GTCTC 1 cut(s) 234
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 3 cut(s) 48, 131, 225
BsoBI CYCGRG 2 cut(s) 125, 237
Bsp1286I GDGCHC 1 cut(s) 249
BspACI CCGC 2 cut(s) 49, 148
BspANI GGCC 3 cut(s) 48, 131, 225
BspQI GCTCTTC 1 cut(s) 254
BssSI CACGAG 1 cut(s) 227
Bst2BI CACGAG 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 254
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 1 cut(s) 83
BstMAI GTCTC 1 cut(s) 234
BstPI GGTNACC 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 17, 20
BsuRI GGCC 3 cut(s) 48, 131, 225
BtsCI GGATG 1 cut(s) 83
CaiI CAGNNNCTG 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 54
CseI GACGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 58
CviQI GTAC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 247
Eco88I CYCGRG 2 cut(s) 125, 237
Eco91I GGTNACC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 249
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 1 cut(s) 61
FaiI YATR 7 cut(s) 15, 59, 113, 134, 203, 302, 317
FaqI GGGAC 1 cut(s) 257
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 6, 9, 49
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 3 cut(s) 6, 9, 49
FspBI CTAG 1 cut(s) 325
GluI GCNGC 3 cut(s) 6, 9, 49
HaeIII GGCC 3 cut(s) 48, 131, 225
HgaI GACGC 1 cut(s) 259
Hin1II CATG 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 2 cut(s) 35, 187
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 4 cut(s) 32, 125, 237, 239
Hsp92II CATG 1 cut(s) 61
LguI GCTCTTC 1 cut(s) 254
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 7 cut(s) 33, 37, 75, 114, 176, 182, 288
Lsp1109I GCAGC 2 cut(s) 17, 20
LweI GCATC 1 cut(s) 92
MaeI CTAG 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 143
MboII GAAGA 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 91
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 5 cut(s) 16, 49, 97, 121, 236
MroXI GAANNNNTTC 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 62
NlaIII CATG 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 201
PaeR7I CTCGAG 2 cut(s) 125, 237
PciSI GCTCTTC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 3 cut(s) 7, 10, 50
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 249
PspEI GGTNACC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 62
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 254
SatI GCNGC 3 cut(s) 6, 9, 49
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 196
SduI GDGCHC 1 cut(s) 249
SetI ASST 9 cut(s) 13, 27, 108, 121, 141, 166, 249, 267, 282
SfaNI GCATC 1 cut(s) 92
Sfr274I CTCGAG 2 cut(s) 125, 237
SinI GGWCC 1 cut(s) 54
SlaI CTCGAG 2 cut(s) 125, 237
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 125, 237
SmoI CTYRAG 2 cut(s) 125, 237
Sse9I AATT 1 cut(s) 91
SsiI CCGC 2 cut(s) 49, 148
SspMI CTAG 1 cut(s) 325
SstI GAGCTC 1 cut(s) 249
TaqI TCGA 3 cut(s) 126, 156, 238
TasI AATT 1 cut(s) 91
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 1 cut(s) 35
TseI GCWGC 2 cut(s) 5, 8
TspDTI ATGAA 2 cut(s) 100, 241
VpaK11BI GGWCC 1 cut(s) 54
XhoI CTCGAG 2 cut(s) 125, 237
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.