Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8479199.1

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2035

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8479199.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 757 bp

gacaatatatgattatcaagttcctccttggcccggcgctgcggctgcggccgtggccggggctggggttgcggttggggatcaatcatcaatggaaagcataagcattctggagttgccactgctagcctccccaagtagttacagtattccggtgcaaggtctaggaacggctgtatatccttttcctgcctctgaacaaagtagagaaaaagaagccattctcagcgcaatcaaaattggttacagacattttgatacggcagtggcttaccagactgagcaagttcttggtcaagctatcggcgaagctatttctcttggcctcatcaaatcccgggatgaactttttgttacttccaagcgttggtgctgtgatgcacaccctcaccgtgtcctccctgccattcagaacaccctcaagtatatatatatgaatctaagattggagtaccttaacctttatctgattcattggcctggggtgtgggaaaccatgaaagactgtcagaagctaggcctcaccaagtccattggagtctgcaatttttcatgcaaaaagatccaaaccttgcttgccactgccgaaatccctcctgcagtcaatcaagtggagatgaatccagtatggcggcagaagaagttgagagaattgtgtaagagaaagggtataattgtcaaggcctactctcctttggggggaaaaggaataccttggggatcaaacgcggtaatggaatgtgaagtcctcaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

251

Amino Acids

27.62

Weight (kDa)

8.75

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccII	CGCG	1 cut(s)	729
AciI	CCGC	5 cut(s)	42, 48, 72, 632, 729
AclWI	GGATC	3 cut(s)	88, 557, 728
AcoI	YGGCCR	2 cut(s)	49, 55
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	6 cut(s)	33, 58, 64, 159, 367, 699
AjnI	CCWGG	1 cut(s)	479
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	3 cut(s)	300, 312, 515
AluI	AGCT	3 cut(s)	300, 312, 515
AlwI	GGATC	3 cut(s)	88, 557, 728
Ama87I	CYCGRG	1 cut(s)	337
AoxI	GGCC	7 cut(s)	30, 49, 55, 323, 477, 518, 682
ApeKI	GCWGC	2 cut(s)	39, 45
Asp700I	GAANNNNTTC	1 cut(s)	220
AspLEI	GCGC	2 cut(s)	39, 231
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	4 cut(s)	34, 59, 338, 339
AsuHPI	GGTGA	2 cut(s)	381, 515
AsuNHI	GCTAGC	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	337
BaeI	ACNNNNGTAYC	2 cut(s)	250, 283
BbvI	GCAGC	2 cut(s)	26, 32
BceAI	ACGGC	3 cut(s)	36, 187, 277
BciT130I	CCWGG	1 cut(s)	481
BcnI	CCSGG	4 cut(s)	34, 59, 338, 339
BfaI	CTAG	3 cut(s)	126, 165, 516
BfmI	CTRYAG	1 cut(s)	598
BfoI	RGCGCY	1 cut(s)	40
BisI	GCNGC	5 cut(s)	40, 43, 46, 49, 633
BlsI	GCNGC	5 cut(s)	41, 44, 47, 50, 634
Bme1390I	CCNGG	5 cut(s)	34, 59, 338, 339, 481
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	31
BmrFI	CCNGG	5 cut(s)	34, 59, 338, 339, 481
BmsI	GCATC	1 cut(s)	368
BmtI	GCTAGC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	405
BpuMI	CCSGG	4 cut(s)	34, 59, 338, 339
BsaJI	CCNNGG	6 cut(s)	27, 52, 58, 337, 480, 714
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	6 cut(s)	33, 58, 64, 159, 367, 699
Bse1I	ACTGG	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	6 cut(s)	27, 52, 58, 337, 480, 714
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	6 cut(s)	33, 58, 64, 159, 367, 699
BseMII	CTCAG	2 cut(s)	239, 271
BseNI	ACTGG	1 cut(s)	624
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	26, 32
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	729
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	7 cut(s)	32, 51, 57, 325, 479, 520, 684
BsiEI	CGRYCG	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	4 cut(s)	34, 58, 153, 338
BslI	CCNNNNNNNGG	6 cut(s)	33, 58, 64, 159, 367, 699
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	7 cut(s)	32, 51, 57, 325, 479, 520, 684
BsoBI	CYCGRG	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	80, 562, 720
BspACI	CCGC	5 cut(s)	42, 48, 72, 632, 729
BspANI	GGCC	7 cut(s)	32, 51, 57, 325, 479, 520, 684
BspCNI	CTCAG	2 cut(s)	238, 272
BspFNI	CGCG	1 cut(s)	729
BspMAI	CTGCAG	1 cut(s)	602
BspOI	GCTAGC	1 cut(s)	129
BspPI	GGATC	3 cut(s)	88, 557, 728
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	6 cut(s)	27, 52, 58, 337, 480, 714
BssMI	GATC	3 cut(s)	80, 562, 720
BssT1I	CCWWGG	2 cut(s)	27, 714
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	3 cut(s)	147, 393, 507
BstC8I	GCNNGC	2 cut(s)	127, 577
BstDEI	CTNAG	3 cut(s)	225, 280, 441
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	347
BstFNI	CGCG	1 cut(s)	729
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	2 cut(s)	39, 231
BstKTI	GATC	3 cut(s)	83, 565, 723
BstMBI	GATC	3 cut(s)	80, 562, 720
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 48, 54, 69
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	5 cut(s)	32, 57, 336, 337, 479
BstSFI	CTRYAG	1 cut(s)	598
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	2 cut(s)	26, 32
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BstZI	CGGCCG	1 cut(s)	49
BsuRI	GGCC	7 cut(s)	32, 51, 57, 325, 479, 520, 684
BtgI	CCRYGG	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	347
BtsI	GCAGTG	3 cut(s)	120, 271, 580
BtsIMutI	CAGTG	3 cut(s)	120, 271, 580
Cac8I	GCNNGC	2 cut(s)	127, 577
CfoI	GCGC	2 cut(s)	39, 231
Cfr13I	GGNCC	1 cut(s)	31
Cfr9I	CCCGGG	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	2 cut(s)	497, 553
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	3 cut(s)	225, 280, 441
DpnI	GATC	3 cut(s)	82, 564, 722
DpnII	GATC	3 cut(s)	80, 562, 720
EaeI	YGGCCR	2 cut(s)	49, 55
EagI	CGGCCG	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	27, 714
Eco147I	AGGCCT	2 cut(s)	520, 684
Eco52I	CGGCCG	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	2 cut(s)	27, 714
ErhI	CCWWGG	2 cut(s)	27, 714
FaeI	CATG	2 cut(s)	500, 556
FatI	CATG	2 cut(s)	496, 552
Fnu4HI	GCNGC	5 cut(s)	40, 43, 46, 49, 633
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	5 cut(s)	40, 43, 46, 49, 633
FspBI	CTAG	3 cut(s)	126, 165, 516
GlaI	GCGC	2 cut(s)	38, 230
GluI	GCNGC	5 cut(s)	40, 43, 46, 49, 633
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	7 cut(s)	32, 51, 57, 325, 479, 520, 684
HapII	CCGG	4 cut(s)	34, 58, 153, 338
HhaI	GCGC	2 cut(s)	39, 231
Hin1II	CATG	2 cut(s)	500, 556
Hin6I	GCGC	2 cut(s)	37, 229
HinP1I	GCGC	2 cut(s)	37, 229
HinfI	GANTC	4 cut(s)	437, 470, 538, 620
HpaII	CCGG	4 cut(s)	34, 58, 153, 338
HphI	GGTGA	2 cut(s)	381, 515
Hpy188I	TCNGA	4 cut(s)	197, 412, 469, 511
Hpy188III	TCNNGA	1 cut(s)	111
HpyCH4III	ACNGT	3 cut(s)	147, 393, 507
HpyCH4V	TGCA	5 cut(s)	158, 381, 544, 556, 600
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 48, 54, 69
HpyF3I	CTNAG	3 cut(s)	225, 280, 441
Hsp92II	CATG	2 cut(s)	500, 556
HspAI	GCGC	2 cut(s)	37, 229
Kzo9I	GATC	3 cut(s)	80, 562, 720
Lsp1109I	GCAGC	2 cut(s)	26, 32
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	3 cut(s)	126, 165, 516
MaeIII	GTNAC	3 cut(s)	141, 243, 353
MalI	GATC	3 cut(s)	82, 564, 722
MboI	GATC	3 cut(s)	80, 562, 720
MboII	GAAGA	1 cut(s)	650
MflI	RGATCY	1 cut(s)	562
MluCI	AATT	4 cut(s)	238, 545, 651, 673
MlyI	GAGTC	1 cut(s)	547
MnlI	CCTC	9 cut(s)	34, 140, 203, 336, 397, 408, 429, 531, 604
MroXI	GAANNNNTTC	1 cut(s)	220
MseI	TTAA	1 cut(s)	457
MspI	CCGG	4 cut(s)	34, 58, 153, 338
MspR9I	CCNGG	5 cut(s)	34, 59, 338, 339, 481
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	481
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	4 cut(s)	45, 48, 54, 69
NciI	CCSGG	4 cut(s)	34, 59, 338, 339
NdeII	GATC	3 cut(s)	80, 562, 720
NheI	GCTAGC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	500, 556
PceI	AGGCCT	2 cut(s)	520, 684
PctI	GAATGC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	437, 470, 620
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	5 cut(s)	41, 44, 47, 50, 634
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	479
PspPI	GGNCC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	457
SatI	GCNGC	5 cut(s)	40, 43, 46, 49, 633
Sau3AI	GATC	3 cut(s)	80, 562, 720
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	5 cut(s)	34, 59, 338, 339, 481
SetI	ASST	8 cut(s)	164, 302, 314, 457, 463, 517, 573, 716
SfaNI	GCATC	1 cut(s)	368
SfcI	CTRYAG	1 cut(s)	598
SmaI	CCCGGG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
Sse9I	AATT	4 cut(s)	238, 545, 651, 673
SseBI	AGGCCT	2 cut(s)	520, 684
SsiI	CCGC	5 cut(s)	42, 48, 72, 632, 729
SspMI	CTAG	3 cut(s)	126, 165, 516
StuI	AGGCCT	2 cut(s)	520, 684
StyD4I	CCNGG	5 cut(s)	32, 57, 336, 337, 479
StyI	CCWWGG	2 cut(s)	27, 714
TaaI	ACNGT	3 cut(s)	147, 393, 507
TasI	AATT	4 cut(s)	238, 545, 651, 673
TauI	GCSGC	3 cut(s)	45, 51, 635
TfiI	GAWTC	3 cut(s)	437, 470, 620
Tru1I	TTAA	1 cut(s)	457
Tru9I	TTAA	1 cut(s)	457
TscAI	CASTG	3 cut(s)	127, 271, 587
TseI	GCWGC	2 cut(s)	39, 45
TspDTI	ATGAA	6 cut(s)	358, 450, 462, 513, 541, 633
TspMI	CCCGGG	1 cut(s)	337
TspRI	CASTG	3 cut(s)	127, 271, 587
Van91I	CCANNNNNTGG	1 cut(s)	367
XmaI	CCCGGG	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	3 cut(s)	126, 165, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.