Rmu_co7982306.1_g000001

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7982306.1
OG0000205
Physical Location & Seq
Reverse (-)
2 .. 495
494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7982306.1_g000001.1.cds

Sequence Viewer

Length: 386 bp
atggatgagagaggcaagaaagtagtcgttatcccggaagtagtactgaattccgggaagaagatgccggtgctaggctttggcaccggagttttcgggagtcctccacccgctcaaaccctggctcttattctcctcgacgccattgagcttggctaccgtcactttgacactgctgctctctatggaaccgaagaagccgtaggtctcgccatcacccaagccctagaccgaggtctcatcaagactcgcgatgagttgttcatcacttccaagctctggtgcactgacgcccatcatgatcttgttctcccagctcttaaattgacactacagaggctgggattggagtatgtggatctatacctgattcattggccggtgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

128

Amino Acids

14.11

Weight (kDa)

5.74

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 279
AccBSI CCGCTC 1 cut(s) 113
AccII CGCG 1 cut(s) 252
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 366
AcoI YGGCCR 1 cut(s) 377
AcsI RAATTY 1 cut(s) 49
AcyI GRCGYC 2 cut(s) 141, 291
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 2 cut(s) 74, 279
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 3 cut(s) 151, 277, 317
AluI AGCT 3 cut(s) 151, 277, 317
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 2 cut(s) 212, 242
Alw44I GTGCAC 1 cut(s) 283
AlwI GGATC 1 cut(s) 366
AlwNI CAGNNNCTG 1 cut(s) 340
AoxI GGCC 1 cut(s) 377
ApaLI GTGCAC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 49
AsuC2I CCSGG 2 cut(s) 35, 55
AsuHPI GGTGA 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 287
BanI GGYRCC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 163
BccI CCATC 2 cut(s) 221, 303
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 122
BcnI CCSGG 2 cut(s) 35, 55
BcoDI GTCTC 2 cut(s) 212, 242
BfaI CTAG 2 cut(s) 74, 227
BfmI CTRYAG 1 cut(s) 332
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BmcAI AGTACT 1 cut(s) 45
Bme1390I CCNGG 3 cut(s) 35, 55, 122
BmiI GGNNCC 2 cut(s) 85, 190
BmrFI CCNGG 3 cut(s) 35, 55, 122
BmsI GCATC 1 cut(s) 54
BoxI GACNNNNGTC 1 cut(s) 234
BpuMI CCSGG 2 cut(s) 35, 55
BsaHI GRCGYC 2 cut(s) 141, 291
BsaI GGTCTC 2 cut(s) 212, 242
BsaJI CCNNGG 2 cut(s) 120, 232
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 279
Bse118I RCCGGY 2 cut(s) 67, 379
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 120, 232
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 74, 279
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 1 cut(s) 163
BseYI CCCAGC 2 cut(s) 313, 340
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 1 cut(s) 379
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 5 cut(s) 35, 54, 68, 87, 380
BslI CCNNNNNNNGG 2 cut(s) 74, 279
BsmAI GTCTC 2 cut(s) 212, 242
BsnI GGCC 1 cut(s) 379
Bso31I GGTCTC 2 cut(s) 212, 242
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 301, 358
Bsp68I TCGCGA 1 cut(s) 252
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 379
BspFNI CGCG 1 cut(s) 252
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 85, 190
BspPI GGATC 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 2 cut(s) 212, 242
BsrBI CCGCTC 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 67, 379
BssAI RCCGGY 2 cut(s) 67, 379
BssECI CCNNGG 2 cut(s) 120, 232
BssMI GATC 2 cut(s) 301, 358
BssNI GRCGYC 2 cut(s) 141, 291
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 161
BstACI GRCGYC 2 cut(s) 141, 291
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 2 cut(s) 304, 361
BstMAI GTCTC 2 cut(s) 212, 242
BstMBI GATC 2 cut(s) 301, 358
BstNI CCWGG 1 cut(s) 122
BstPAI GACNNNNGTC 1 cut(s) 234
BstSCI CCNGG 3 cut(s) 33, 53, 120
BstSFI CTRYAG 1 cut(s) 332
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 1 cut(s) 379
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 285
BtuMI TCGCGA 1 cut(s) 252
CaiI CAGNNNCTG 1 cut(s) 340
CciI TCATGA 1 cut(s) 298
Cfr10I RCCGGY 2 cut(s) 67, 379
CseI GACGC 2 cut(s) 149, 299
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 299
CviQI GTAC 1 cut(s) 44
DpnI GATC 2 cut(s) 303, 360
DpnII GATC 2 cut(s) 301, 358
EaeI YGGCCR 1 cut(s) 377
Eco31I GGTCTC 2 cut(s) 212, 242
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 302
FaiI YATR 4 cut(s) 186, 300, 354, 364
FatI CATG 1 cut(s) 298
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 74, 227
GluI GCNGC 1 cut(s) 177
GsaI CCCAGC 2 cut(s) 317, 344
HaeIII GGCC 1 cut(s) 379
HapII CCGG 5 cut(s) 35, 54, 68, 87, 380
HgaI GACGC 2 cut(s) 149, 299
Hin1I GRCGYC 2 cut(s) 141, 291
Hin1II CATG 1 cut(s) 302
HinfI GANTC 3 cut(s) 100, 247, 370
HpaII CCGG 5 cut(s) 35, 54, 68, 87, 380
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 285
Hpy188III TCNNGA 4 cut(s) 97, 244, 251, 299
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 285
Hsp92I GRCGYC 2 cut(s) 141, 291
Hsp92II CATG 1 cut(s) 302
Kzo9I GATC 2 cut(s) 301, 358
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 54
MaeI CTAG 2 cut(s) 74, 227
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 303, 360
MbiI CCGCTC 1 cut(s) 113
MboI GATC 2 cut(s) 301, 358
MboII GAAGA 3 cut(s) 70, 73, 206
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 2 cut(s) 49, 323
MlyI GAGTC 2 cut(s) 109, 241
MnlI CCTC 5 cut(s) 5, 114, 146, 227, 330
MseI TTAA 1 cut(s) 321
MspI CCGG 5 cut(s) 35, 54, 68, 87, 380
MspR9I CCNGG 3 cut(s) 35, 55, 122
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 252
NciI CCSGG 2 cut(s) 35, 55
NdeII GATC 2 cut(s) 301, 358
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 2 cut(s) 85, 190
NmuCI GTSAC 1 cut(s) 161
NruI TCGCGA 1 cut(s) 252
PagI TCATGA 1 cut(s) 298
PfeI GAWTC 1 cut(s) 370
PflMI CCANNNNNTGG 1 cut(s) 279
PfoI TCCNGGA 2 cut(s) 33, 53
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 2 cut(s) 108, 241
PpsI GAGTC 2 cut(s) 108, 241
PshAI GACNNNNGTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 120
PspFI CCCAGC 2 cut(s) 313, 340
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 85, 190
PstNI CAGNNNCTG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 358
RruI TCGCGA 1 cut(s) 252
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 301, 358
ScaI AGTACT 1 cut(s) 45
SchI GAGTC 2 cut(s) 109, 241
ScrFI CCNGG 3 cut(s) 35, 55, 122
SduI GDGCHC 1 cut(s) 287
SetI ASST 6 cut(s) 153, 208, 238, 279, 319, 369
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 49, 323
SsiI CCGC 1 cut(s) 111
SspMI CTAG 2 cut(s) 74, 227
StyD4I CCNGG 3 cut(s) 33, 53, 120
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 138
TaqII GACCGA 1 cut(s) 246
TasI AATT 2 cut(s) 49, 323
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 178, 292
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 253, 362
TspRI CASTG 2 cut(s) 178, 292
Van91I CCANNNNNTGG 1 cut(s) 279
VneI GTGCAC 1 cut(s) 283
XapI RAATTY 1 cut(s) 49
XspI CTAG 2 cut(s) 74, 227
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.