FvH4_4g25591

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000205
Physical Location & Seq
Forward (+)
27306847 .. 27307504
658 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25591.t1

Sequence Viewer

Length: 576 bp
ATGGCAGCAACCAAAGTACCAGAGGTGGTGCTAGGCTCTTTCAATGGCCAATGTATGCCTGTGCTCGGCTTTGGCACAGCAGCTGACAACTTAGACCCGATTGCTTTGAAGACTGCGGTTCTTGAAGCCATAAAGCTGGGTTACAGGCACTTCGACACAGCCCCCATATACACCTCAGAGCAGACTCTAGGTGAAGCAGTGGCTGAAGCTATTAGCCTTGGCCTTGTTGCCTCTAGAGACCAAGTGTTTATCACTTCAAAGCTGTGGTGTAATGATGCTCATCCAGACTTGGTCATTCCTGCTCTAAAGAAATCACTTCATAATCTTCAAATGGAGTACCTTGATCTTTATCTCATTCACTGGCCCATAAGTGGTAAGCCAGGGAAGTTAGTGTACCCGCTAACCGAAGAGGACCTTGTGGCATTGGACTTGAAAGGAGTGTGGGCAGCCATGGAAGAATCACAGAGACTTGGCCTCACCAAGTCCATAGGAGTGAGCAATTTCTCTTCCAAAAAGACTGAAAATCTGCTCTCTTTTGCAACTATTCCTCCTCCTGTTAATCAAGTAATTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

192

Amino Acids

20.75

Weight (kDa)

5.33

Isoelectric Point (pI)

26.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 189 1.3e-31 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 116, 398
AcoI YGGCCR 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 3 cut(s) 18, 338, 395
AfiI CCNNNNNNNGG 2 cut(s) 65, 371
AgsI TTSAA 6 cut(s) 43, 109, 125, 258, 329, 433
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 4 cut(s) 83, 136, 209, 262
AluI AGCT 4 cut(s) 83, 136, 209, 262
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 2 cut(s) 231, 460
AlwNI CAGNNNCTG 2 cut(s) 83, 203
AoxI GGCC 4 cut(s) 46, 220, 362, 472
ApeKI GCWGC 3 cut(s) 5, 80, 446
AspS9I GGNCC 2 cut(s) 363, 412
AsuHPI GGTGA 2 cut(s) 203, 469
AvaII GGWCC 1 cut(s) 412
BaeI ACNNNNGTAYC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 48
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 3 cut(s) 17, 92, 458
BciT130I CCWGG 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 231, 460
BfaI CTAG 4 cut(s) 32, 188, 234, 574
BisI GCNGC 3 cut(s) 6, 81, 447
BlsI GCNGC 3 cut(s) 7, 82, 448
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 363, 412
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 116
BsaBI GATNNNNATC 2 cut(s) 279, 348
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 217, 380, 450
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 371
Bse1I ACTGG 1 cut(s) 365
Bse8I GATNNNNATC 2 cut(s) 279, 348
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 3 cut(s) 217, 380, 450
BseGI GGATG 1 cut(s) 280
BseJI GATNNNNATC 2 cut(s) 279, 348
BseLI CCNNNNNNNGG 2 cut(s) 65, 371
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 540
BseXI GCAGC 3 cut(s) 17, 92, 458
BseYI CCCAGC 1 cut(s) 136
BshFI GGCC 4 cut(s) 48, 222, 364, 474
BsiHKAI GWGCWC 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 65, 371
BsmAI GTCTC 2 cut(s) 231, 460
BsnI GGCC 4 cut(s) 48, 222, 364, 474
Bso31I GGTCTC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 343
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 2 cut(s) 116, 398
BspANI GGCC 4 cut(s) 48, 222, 364, 474
BspCNI CTCAG 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 231
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 3 cut(s) 217, 380, 450
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 2 cut(s) 217, 450
Bst2UI CCWGG 1 cut(s) 381
Bst6I CTCTTC 2 cut(s) 402, 511
BstDEI CTNAG 2 cut(s) 91, 175
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 2 cut(s) 231, 460
BstMBI GATC 1 cut(s) 343
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 379
BstV1I GCAGC 3 cut(s) 17, 92, 458
BstV2I GAAGAC 1 cut(s) 116
BstXI CCANNNNNNTGG 1 cut(s) 136
BsuRI GGCC 4 cut(s) 48, 222, 364, 474
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 204, 358
CaiI CAGNNNCTG 2 cut(s) 83, 203
Cfr13I GGNCC 2 cut(s) 363, 412
Csp6I GTAC 3 cut(s) 17, 337, 394
CviAII CATG 1 cut(s) 451
CviQI GTAC 3 cut(s) 17, 337, 394
DdeI CTNAG 2 cut(s) 91, 175
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 402, 511
EarI CTCTTC 2 cut(s) 402, 511
Eco130I CCWWGG 2 cut(s) 217, 450
Eco31I GGTCTC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 2 cut(s) 217, 450
ErhI CCWWGG 2 cut(s) 217, 450
FaeI CATG 1 cut(s) 454
FaiI YATR 8 cut(s) 56, 131, 167, 169, 321, 368, 452, 488
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 1 cut(s) 450
FauI CCCGC 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 6, 81, 447
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 3 cut(s) 6, 81, 447
FspBI CTAG 4 cut(s) 32, 188, 234, 574
GluI GCNGC 3 cut(s) 6, 81, 447
GsaI CCCAGC 1 cut(s) 140
HaeIII GGCC 4 cut(s) 48, 222, 364, 474
Hin1II CATG 1 cut(s) 454
HinfI GANTC 2 cut(s) 184, 458
HphI GGTGA 2 cut(s) 203, 469
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 3 cut(s) 122, 234, 284
Hpy8I GTNNAC 1 cut(s) 394
HpyCH4V TGCA 1 cut(s) 539
HpyF3I CTNAG 2 cut(s) 91, 175
Hsp92II CATG 1 cut(s) 454
Kzo9I GATC 1 cut(s) 343
Lsp1109I GCAGC 3 cut(s) 17, 92, 458
LweI GCATC 1 cut(s) 265
MaeI CTAG 4 cut(s) 32, 188, 234, 574
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 5 cut(s) 121, 317, 419, 467, 498
MhlI GDGCHC 1 cut(s) 66
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 2 cut(s) 499, 567
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 7 cut(s) 16, 184, 241, 403, 485, 558, 561
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 1 cut(s) 558
MslI CAYNNNNRTG 1 cut(s) 491
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 381
NcoI CCATGG 1 cut(s) 450
NdeII GATC 1 cut(s) 343
NlaIII CATG 1 cut(s) 454
NmeAIII GCCGAG 1 cut(s) 45
PfeI GAWTC 1 cut(s) 458
PflFI GACNNNGTC 1 cut(s) 290
PkrI GCNGC 3 cut(s) 7, 82, 448
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 412
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 1 cut(s) 379
PspPI GGNCC 2 cut(s) 363, 412
PspPPI RGGWCCY 1 cut(s) 412
PstNI CAGNNNCTG 2 cut(s) 83, 203
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 3 cut(s) 18, 338, 395
RsaNI GTAC 3 cut(s) 17, 337, 394
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 3 cut(s) 6, 81, 447
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 2 cut(s) 363, 412
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 66
SetI ASST 9 cut(s) 27, 85, 138, 176, 193, 211, 264, 342, 417
SfaNI GCATC 1 cut(s) 265
SinI GGWCC 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 491
Sse9I AATT 2 cut(s) 499, 567
SsiI CCGC 2 cut(s) 116, 398
SspMI CTAG 4 cut(s) 32, 188, 234, 574
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 2 cut(s) 217, 450
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 499, 567
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 2 cut(s) 204, 365
TseI GCWGC 3 cut(s) 5, 80, 446
TspDTI ATGAA 1 cut(s) 308
TspRI CASTG 2 cut(s) 204, 365
Tth111I GACNNNGTC 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 412
XbaI TCTAGA 1 cut(s) 233
XspI CTAG 4 cut(s) 32, 188, 234, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.