RchiOBHm_Chr6g0281251

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000205
Physical Location & Seq
Reverse (-)
44583619 .. 44584671
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25225

Sequence Viewer

Length: 915 bp
ATGCCTGTGCTTGGCTTCGGCACAGCATCCAACAATTTACAACCAGAGGTTTTGATAGAAGCTGTTCTCGAGGCCATCAAGCTCGGTTACCGCCACTTCGACACGGCTTCCCTGTACGGCTCGGAGCAGAGTCTGGGAGAAGCCATAGCCCAAGCACTCAAACTCGGCCTCGTGGCTTCTCGAGACGAGCTCTTCATTACTTCCAAGCTTTGGCCTAATGATGCTCACCCTGATTTGGTTCTTCCTGCTCTAAACAAATCCCTTGGGAATCTTCAATTGGATTACCTTGATCTGTATCTGATCCACTGGCCCATCAGTGCCACGCCTGGGAAATTGAGTCACTTTCTCGAGGAGAAGGACCAAATGCCGATGGACTTCAAGGGTGTGTGGGCAGCCATGGAACAAGCTCAGAGACGTGGCCTCACCAAATCCATTGGAATCAGCAATTTCTCTACCAAAAAGACTCACAATTTGCTCTCTTTTGCTACTATTCCTCCTTCTGTCAATCAAGTTGAGATGAGCCCATTTTGGCAACAAAAGAAGCTCAGGGACTTTTGCAAAGCCAATGGTATAGTTGTGACTGCCTTCTCCCCATTGGGTGCCATAGGAACCAGTTGGGGTACCAATCATGTTCTCGAAAGCAAAGTGCTTAATGAAATCGCTGAGGCTCGGGGAAAGACTGTTGCTCAGGTCTGCATTAGATGGGTTTACCAGGTAGGAGCAACACTTGCAGTGAAGAGCTACAACAAGGAGAGGTTGAAGCATAATATGCAGGTGTTCGACTGGGAACTAACACAAGAGGATCTTGACAAGATCAGTCAAATCCCACAGCGCAAAATGATGCTTCGAGAAGAGATGGTGACGGCTACTGGCCCATACAAGTCCCTTGACGAGTTATGGGACGGAGAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

304

Amino Acids

34.12

Weight (kDa)

6.19

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 4 - 275 7.7e-56 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 763
Acc36I ACCTGC 1 cut(s) 763
Acc65I GGTACC 1 cut(s) 620
AccB1I GGYRCC 2 cut(s) 599, 620
AccB7I CCANNNNNTGG 1 cut(s) 210
AciI CCGC 1 cut(s) 91
AclWI GGATC 2 cut(s) 295, 810
AfaI GTAC 2 cut(s) 116, 622
AfiI CCNNNNNNNGG 4 cut(s) 11, 210, 235, 327
AgsI TTSAA 3 cut(s) 275, 379, 760
AjiI CACGTC 1 cut(s) 416
AjnI CCWGG 2 cut(s) 325, 711
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 7 cut(s) 62, 82, 190, 208, 407, 544, 741
AluI AGCT 7 cut(s) 62, 82, 190, 208, 407, 544, 741
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 177, 406
AlwI GGATC 2 cut(s) 295, 810
AlwNI CAGNNNCTG 1 cut(s) 133
Ama87I CYCGRG 4 cut(s) 68, 180, 347, 669
AoxI GGCC 6 cut(s) 72, 166, 212, 308, 418, 871
ApeKI GCWGC 1 cut(s) 392
ArsI GACNNNNNNTTYG 2 cut(s) 454, 486
Asp700I GAANNNNTTC 1 cut(s) 63
Asp718I GGTACC 1 cut(s) 620
AspLEI GCGC 1 cut(s) 834
AspS9I GGNCC 3 cut(s) 309, 358, 872
AsuHPI GGTGA 3 cut(s) 218, 415, 871
AvaI CYCGRG 4 cut(s) 68, 180, 347, 669
AvaII GGWCC 1 cut(s) 358
BanI GGYRCC 2 cut(s) 599, 620
BanII GRGCYC 2 cut(s) 192, 524
BauI CACGAG 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 192
BbvCI CCTCAGC 1 cut(s) 663
BbvI GCAGC 1 cut(s) 404
BccI CCATC 5 cut(s) 83, 320, 364, 696, 850
BceAI ACGGC 3 cut(s) 120, 133, 879
BciT130I CCWGG 2 cut(s) 327, 713
BcoDI GTCTC 2 cut(s) 177, 406
BfuAI ACCTGC 1 cut(s) 763
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 327, 713
Bme18I GGWCC 1 cut(s) 358
BmeT110I CYCGRG 4 cut(s) 68, 180, 347, 669
BmgBI CACGTC 1 cut(s) 416
BmgT120I GGNCC 3 cut(s) 309, 358, 872
BmiI GGNNCC 3 cut(s) 601, 610, 622
BmrFI CCNGG 2 cut(s) 327, 713
BmrI ACTGGG 1 cut(s) 793
BmsI GCATC 3 cut(s) 35, 211, 831
BmuI ACTGGG 1 cut(s) 793
BplI GAGNNNNNCTC 2 cut(s) 174, 206
Bpu10I CCTNAGC 3 cut(s) 545, 663, 687
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 262, 326, 396
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 210, 235, 327
Bse1I ACTGG 4 cut(s) 311, 612, 788, 874
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 2 cut(s) 327, 713
BseDI CCNNGG 3 cut(s) 262, 326, 396
BseGI GGATG 1 cut(s) 26
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 4 cut(s) 11, 210, 235, 327
BseMII CTCAG 4 cut(s) 422, 559, 654, 701
BseNI ACTGG 4 cut(s) 311, 612, 788, 874
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 404
BshFI GGCC 6 cut(s) 74, 168, 214, 310, 420, 873
BshNI GGYRCC 2 cut(s) 599, 620
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 4 cut(s) 68, 180, 347, 669
BslFI GGGAC 2 cut(s) 563, 868
BslI CCNNNNNNNGG 4 cut(s) 11, 210, 235, 327
BsmAI GTCTC 2 cut(s) 177, 406
BsmBI CGTCTC 2 cut(s) 177, 406
BsmFI GGGAC 2 cut(s) 563, 868
BsnI GGCC 6 cut(s) 74, 168, 214, 310, 420, 873
BsoBI CYCGRG 4 cut(s) 68, 180, 347, 669
Bsp1286I GDGCHC 2 cut(s) 192, 524
Bsp143I GATC 4 cut(s) 289, 300, 802, 813
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 1 cut(s) 91
BspANI GGCC 6 cut(s) 74, 168, 214, 310, 420, 873
BspCNI CTCAG 4 cut(s) 421, 558, 655, 700
BspLI GGNNCC 3 cut(s) 601, 610, 622
BspMI ACCTGC 1 cut(s) 763
BspPI GGATC 2 cut(s) 295, 810
BspQI GCTCTTC 2 cut(s) 197, 731
BspT107I GGYRCC 2 cut(s) 599, 620
BsrI ACTGG 4 cut(s) 311, 612, 788, 874
BssECI CCNNGG 3 cut(s) 262, 326, 396
BssMI GATC 4 cut(s) 289, 300, 802, 813
BssSI CACGAG 1 cut(s) 170
BssT1I CCWWGG 2 cut(s) 262, 396
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 2 cut(s) 327, 713
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 3 cut(s) 197, 731, 846
BstAPI GCANNNNNTGC 2 cut(s) 728, 769
BstDEI CTNAG 4 cut(s) 408, 545, 663, 687
BstDSI CCRYGG 1 cut(s) 396
BstEII GGTNACC 1 cut(s) 86
BstF5I GGATG 1 cut(s) 26
BstHHI GCGC 1 cut(s) 834
BstKTI GATC 4 cut(s) 292, 303, 805, 816
BstMAI GTCTC 2 cut(s) 177, 406
BstMBI GATC 4 cut(s) 289, 300, 802, 813
BstMWI GCNNNNNNNGC 2 cut(s) 728, 769
BstNI CCWGG 2 cut(s) 327, 713
BstPI GGTNACC 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 325, 711
BstV1I GCAGC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 802
BstYI RGATCY 1 cut(s) 802
BsuRI GGCC 6 cut(s) 74, 168, 214, 310, 420, 873
BtgI CCRYGG 1 cut(s) 396
BtrI CACGTC 1 cut(s) 416
BtsCI GGATG 1 cut(s) 26
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 3 cut(s) 304, 322, 738
BveI ACCTGC 1 cut(s) 763
CaiI CAGNNNCTG 1 cut(s) 133
CfoI GCGC 1 cut(s) 834
Cfr13I GGNCC 3 cut(s) 309, 358, 872
CsiI ACCWGGT 1 cut(s) 711
Csp6I GTAC 2 cut(s) 115, 621
CviAII CATG 2 cut(s) 397, 629
CviQI GTAC 2 cut(s) 115, 621
DdeI CTNAG 4 cut(s) 408, 545, 663, 687
DpnI GATC 4 cut(s) 291, 302, 804, 815
DpnII GATC 4 cut(s) 289, 300, 802, 813
Eam1104I CTCTTC 3 cut(s) 197, 731, 846
EarI CTCTTC 3 cut(s) 197, 731, 846
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 2 cut(s) 262, 396
Eco24I GRGCYC 2 cut(s) 192, 524
Eco47I GGWCC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 4 cut(s) 68, 180, 347, 669
Eco91I GGTNACC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 190
EcoO65I GGTNACC 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 325, 711
EcoT14I CCWWGG 2 cut(s) 262, 396
EcoT38I GRGCYC 2 cut(s) 192, 524
ErhI CCWWGG 2 cut(s) 262, 396
Esp3I CGTCTC 2 cut(s) 177, 406
FaeI CATG 2 cut(s) 400, 632
FaiI YATR 9 cut(s) 146, 398, 572, 605, 630, 765, 770, 877, 898
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 2 cut(s) 563, 868
FatI CATG 2 cut(s) 396, 628
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 1 cut(s) 13
FriOI GRGCYC 2 cut(s) 192, 524
Fsp4HI GCNGC 1 cut(s) 393
GlaI GCGC 1 cut(s) 833
GluI GCNGC 1 cut(s) 393
HaeIII GGCC 6 cut(s) 74, 168, 214, 310, 420, 873
HhaI GCGC 1 cut(s) 834
Hin1II CATG 2 cut(s) 400, 632
Hin6I GCGC 1 cut(s) 832
HinP1I GCGC 1 cut(s) 832
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 5 cut(s) 130, 268, 337, 438, 463
HphI GGTGA 3 cut(s) 218, 415, 871
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 3 cut(s) 124, 300, 411
Hpy188III TCNNGA 7 cut(s) 68, 180, 182, 347, 635, 806, 848
Hpy8I GTNNAC 1 cut(s) 709
HpyAV CCTTC 3 cut(s) 349, 507, 595
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 4 cut(s) 558, 696, 731, 772
HpyF10VI GCNNNNNNNGC 2 cut(s) 728, 769
HpyF3I CTNAG 4 cut(s) 408, 545, 663, 687
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 2 cut(s) 400, 632
HspAI GCGC 1 cut(s) 832
KpnI GGTACC 1 cut(s) 624
Kzo9I GATC 4 cut(s) 289, 300, 802, 813
LguI GCTCTTC 2 cut(s) 197, 731
LmnI GCTCC 2 cut(s) 124, 719
Lsp1109I GCAGC 1 cut(s) 404
LweI GCATC 3 cut(s) 35, 211, 831
MabI ACCWGGT 1 cut(s) 711
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 4 cut(s) 86, 338, 577, 859
MalI GATC 4 cut(s) 291, 302, 804, 815
MboI GATC 4 cut(s) 289, 300, 802, 813
MboII GAAGA 5 cut(s) 184, 233, 263, 748, 863
MfeI CAATTG 1 cut(s) 275
MflI RGATCY 1 cut(s) 802
MhlI GDGCHC 2 cut(s) 192, 524
MluCI AATT 5 cut(s) 34, 275, 332, 445, 469
MlyI GAGTC 3 cut(s) 139, 346, 457
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 9 cut(s) 40, 64, 179, 343, 431, 504, 658, 747, 793
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 2 cut(s) 651, 913
MspR9I CCNGG 2 cut(s) 327, 713
MunI CAATTG 1 cut(s) 275
MvaI CCWGG 2 cut(s) 327, 713
MwoI GCNNNNNNNGC 2 cut(s) 728, 769
NcoI CCATGG 1 cut(s) 396
NdeII GATC 4 cut(s) 289, 300, 802, 813
NlaIII CATG 2 cut(s) 400, 632
NlaIV GGNNCC 3 cut(s) 601, 610, 622
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 3 cut(s) 338, 577, 859
PaeR7I CTCGAG 3 cut(s) 68, 180, 347
PaqCI CACCTGC 1 cut(s) 763
PciSI GCTCTTC 2 cut(s) 197, 731
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 268, 438
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 3 cut(s) 138, 345, 457
PpsI GAGTC 3 cut(s) 138, 345, 457
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 325, 711
PspEI GGTNACC 1 cut(s) 86
PspGI CCWGG 2 cut(s) 325, 711
PspN4I GGNNCC 3 cut(s) 601, 610, 622
PspPI GGNCC 3 cut(s) 309, 358, 872
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 802
RsaI GTAC 2 cut(s) 116, 622
RsaNI GTAC 2 cut(s) 115, 621
SacI GAGCTC 1 cut(s) 192
SapI GCTCTTC 2 cut(s) 197, 731
SaqAI TTAA 2 cut(s) 651, 913
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 4 cut(s) 289, 300, 802, 813
Sau96I GGNCC 3 cut(s) 309, 358, 872
SchI GAGTC 3 cut(s) 139, 346, 457
ScrFI CCNGG 2 cut(s) 327, 713
SduI GDGCHC 2 cut(s) 192, 524
SexAI ACCWGGT 1 cut(s) 711
SfaNI GCATC 3 cut(s) 35, 211, 831
Sfr274I CTCGAG 3 cut(s) 68, 180, 347
SinI GGWCC 1 cut(s) 358
SlaI CTCGAG 3 cut(s) 68, 180, 347
SmlI CTYRAG 3 cut(s) 68, 180, 347
SmoI CTYRAG 3 cut(s) 68, 180, 347
Sse9I AATT 5 cut(s) 34, 275, 332, 445, 469
SsiI CCGC 1 cut(s) 91
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 325, 711
StyI CCWWGG 2 cut(s) 262, 396
TaaI ACNGT 1 cut(s) 682
TaiI ACGT 1 cut(s) 418
TaqI TCGA 7 cut(s) 69, 99, 181, 348, 636, 780, 847
TasI AATT 5 cut(s) 34, 275, 332, 445, 469
TfiI GAWTC 2 cut(s) 268, 438
Tru1I TTAA 2 cut(s) 651, 913
Tru9I TTAA 2 cut(s) 651, 913
TscAI CASTG 3 cut(s) 311, 322, 738
TseFI GTSAC 3 cut(s) 338, 577, 859
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 3 cut(s) 338, 577, 859
TspDTI ATGAA 2 cut(s) 184, 669
TspRI CASTG 3 cut(s) 311, 322, 738
Van91I CCANNNNNTGG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 358
XhoI CTCGAG 3 cut(s) 68, 180, 347
XmnI GAANNNNTTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.