Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

71930955 .. 71942115

Gene Structure 11161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG422400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGAAGCTTGCCAGTAGCCGAAAATGTCTCATCACGTTCTATGACTTCCATCAACATTCCAGTGTTGCCACTGATCTCATCATCAACTGGGAAAACAAGCAACATTCCTGTTCTATGTTTCGGAACTGCTACGTACCCTTTTGTTGGCTCAGAAATCGTAAAAGAAGCCATTCTCGATGCGATCAGAGTTGGCTACAGACATTTTGACACAGCCGCTCTTTACCAGACGAAGCAGAGTCTCGATGAAGCAATTTCGGAAGCTCTCTCTTGGCCTCATCGAACCTCTTCATCACTTCCAAGCTGTGGTGCAGTGATGCTCACACCCACCAAACTATCTCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

115

Amino Acids

12.22

Weight (kDa)

6.71

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccBSI	CCGCTC	1 cut(s)	218
AciI	CCGC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	146, 305
AluBI	AGCT	3 cut(s)	9, 263, 303
AluI	AGCT	3 cut(s)	9, 263, 303
Alw26I	GTCTC	2 cut(s)	34, 245
AoxI	GGCC	1 cut(s)	272
Asp700I	GAANNNNTTC	2 cut(s)	171, 286
BccI	CCATC	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	34, 245
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	169, 306
BmuI	ACTGGG	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 305
Bse1I	ACTGG	3 cut(s)	14, 62, 94
BseLI	CCNNNNNNNGG	2 cut(s)	146, 305
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	3 cut(s)	14, 62, 94
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	146, 305
BsmAI	GTCTC	2 cut(s)	34, 245
BsnI	GGCC	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	75, 183
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	218
BsrI	ACTGG	3 cut(s)	14, 62, 94
BssMI	GATC	2 cut(s)	75, 183
Bst6I	CTCTTC	1 cut(s)	292
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	78, 186
BstMAI	GTCTC	2 cut(s)	34, 245
BstMBI	GATC	2 cut(s)	75, 183
BstSFI	CTRYAG	1 cut(s)	196
BstSNI	TACGTA	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	3 cut(s)	69, 71, 318
Cac8I	GCNNGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	136
CviJI	RGCY	9 cut(s)	9, 20, 150, 170, 195, 215, 263, 274, 303
CviKI_1	RGCY	9 cut(s)	9, 20, 150, 170, 195, 215, 263, 274, 303
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	2 cut(s)	77, 185
DpnII	GATC	2 cut(s)	75, 183
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco105I	TACGTA	1 cut(s)	135
FaiI	YATR	3 cut(s)	44, 118, 346
Fnu4HI	GCNGC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	1 cut(s)	238
Hpy188I	TCNGA	4 cut(s)	125, 154, 188, 259
Hpy188III	TCNNGA	2 cut(s)	176, 242
HpyCH4IV	ACGT	2 cut(s)	37, 134
HpyCH4V	TGCA	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	2 cut(s)	37, 134
Kzo9I	GATC	2 cut(s)	75, 183
LpnPI	CCDG	5 cut(s)	27, 75, 75, 123, 239
LweI	GCATC	2 cut(s)	169, 306
MaeII	ACGT	2 cut(s)	37, 134
MalI	GATC	2 cut(s)	77, 185
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	2 cut(s)	75, 183
MboII	GAAGA	1 cut(s)	279
MluCI	AATT	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	2 cut(s)	285, 295
MroXI	GAANNNNTTC	2 cut(s)	171, 286
MslI	CAYNNNNRTG	1 cut(s)	62
NdeII	GATC	2 cut(s)	75, 183
PdmI	GAANNNNTTC	2 cut(s)	171, 286
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Ppu21I	YACGTR	1 cut(s)	135
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	62
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	75, 183
SchI	GAGTC	1 cut(s)	247
SetI	ASST	6 cut(s)	11, 40, 137, 265, 287, 305
SfaNI	GCATC	2 cut(s)	169, 306
SfcI	CTRYAG	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
SnaBI	TACGTA	1 cut(s)	135
Sse9I	AATT	1 cut(s)	252
SsiI	CCGC	1 cut(s)	216
TaiI	ACGT	2 cut(s)	40, 137
TaqI	TCGA	3 cut(s)	177, 243, 280
TasI	AATT	1 cut(s)	252
TauI	GCSGC	1 cut(s)	218
TscAI	CASTG	3 cut(s)	69, 78, 318
TspDTI	ATGAA	2 cut(s)	261, 279
TspRI	CASTG	3 cut(s)	69, 78, 318
Van91I	CCANNNNNTGG	1 cut(s)	305
XmnI	GAANNNNTTC	2 cut(s)	171, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.