RLG00000032739

Non-functional NADPH-dependent codeinone reductase 2-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
18523211 .. 18524002
792 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032739

Sequence Viewer

Length: 312 bp
ATGCTTAGTAAGTTCTGTCGCGGCGTTGCTCGTTTCATGGCGATCGTGCTAAGGTTTATAGCTCTTGTCGGGTTTGTTGTTTTGGTGTGTATTAGATGGGTTTATCAGGTAGGAGCAACTCTTGCAGTGAAGAGCTACAGCAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTCGACTGGGAACTAACAGAAGAGGATCTTGAGAAGATCAATCGAATCCCAATGCGCAAAATGATGGTTCGAGAAGAAGAGTTGGTTACGGCTACCGGACCATACAAGTCCCTTGATGAGTTTTGGGATGGAGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

12.05

Weight (kDa)

7.74

Isoelectric Point (pI)

26.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 157
Acc16I TGCGCA 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 157
AccII CGCG 1 cut(s) 21
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 204
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 2 cut(s) 62, 135
AluI AGCT 2 cut(s) 62, 135
AlwI GGATC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 269
BccI CCATC 3 cut(s) 90, 229, 293
BceAI ACGGC 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 136
BfuAI ACCTGC 1 cut(s) 157
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmrI ACTGGG 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 182
BsgI GTGCAG 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 265
Bsp143I GATC 3 cut(s) 42, 196, 207
BspACI CCGC 1 cut(s) 21
BspFNI CGCG 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 157
BspPI GGATC 1 cut(s) 204
BspQI GCTCTTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 182
BssMI GATC 3 cut(s) 42, 196, 207
Bst6I CTCTTC 3 cut(s) 125, 186, 243
BstAPI GCANNNNNTGC 2 cut(s) 122, 163
BstDEI CTNAG 2 cut(s) 5, 50
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 3 cut(s) 45, 199, 210
BstMBI GATC 3 cut(s) 42, 196, 207
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 122, 163
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 269
CviAII CATG 1 cut(s) 37
CviJI RGCY 3 cut(s) 62, 135, 263
CviKI_1 RGCY 3 cut(s) 62, 135, 263
DdeI CTNAG 2 cut(s) 5, 50
DpnI GATC 3 cut(s) 44, 198, 209
DpnII GATC 3 cut(s) 42, 196, 207
Eam1104I CTCTTC 3 cut(s) 125, 186, 243
EarI CTCTTC 3 cut(s) 125, 186, 243
Eco47I GGWCC 1 cut(s) 269
FaeI CATG 1 cut(s) 40
FaiI YATR 3 cut(s) 38, 59, 274
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 265
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 22
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 22
HapII CCGG 1 cut(s) 267
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 2 cut(s) 216, 305
HpaII CCGG 1 cut(s) 267
Hpy188III TCNNGA 3 cut(s) 200, 242, 309
HpyCH4V TGCA 2 cut(s) 125, 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 163
HpyF3I CTNAG 2 cut(s) 5, 50
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 3 cut(s) 42, 196, 207
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 4 cut(s) 92, 152, 163, 280
MaeIII GTNAC 1 cut(s) 256
MalI GATC 3 cut(s) 44, 198, 209
MboI GATC 3 cut(s) 42, 196, 207
MboII GAAGA 5 cut(s) 142, 203, 217, 257, 260
MflI RGATCY 1 cut(s) 196
MnlI CCTC 2 cut(s) 141, 187
MspI CCGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 122, 163
NdeII GATC 3 cut(s) 42, 196, 207
NlaIII CATG 1 cut(s) 40
NsbI TGCGCA 1 cut(s) 227
PaqCI CACCTGC 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 216
PkrI GCNGC 1 cut(s) 23
Ple19I CGATCG 1 cut(s) 45
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 1 cut(s) 196
PvuI CGATCG 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 125
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 3 cut(s) 42, 196, 207
Sau96I GGNCC 1 cut(s) 269
SetI ASST 6 cut(s) 56, 64, 111, 137, 152, 171
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SsiI CCGC 1 cut(s) 21
TaqI TCGA 3 cut(s) 174, 214, 241
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 1 cut(s) 216
TscAI CASTG 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 25
TspRI CASTG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.