RchiOBHm_Chr4g0433021

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000205
Physical Location & Seq
Forward (+)
57102114 .. 57103446
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40157

Sequence Viewer

Length: 942 bp
ATGATGGCAGCAACCAAAATCCCAGAGGTGGTGTTAGGCTCCTCCAGTGGCCAAAGGACCATGCCTGTGCTCGGCTTTGGCACAGCAACTGACTACTTGGACCCGAATGCTTTGAAGACTGCGGTTCTTGAAGCCATAAAGCTGGGTTACAGACACTTCGACACGGCTTCCATATACACCTCAGAGCAGACTCTACGTGAAGCCGTGGCCGAAGCTATTAGCCTCGGTCTTATTGCCTCTAGAGACCAAGTGTTCATCACTTCAAAGATGTGGTGTAATGATGCTCATCCAGACTTGGTCATTCCTGCTCTAAAGAAATCACTTCAGAATCTTCGAATGGAGTACCTTGATCTGTATCTGATTCACTGGCGCATAAGTGGTAAGCCAGGGAAATTAGTGTACCCGCTAACCGAAGAGGACCTTGTGCCATTGGACTTGAAGGGCGTGTGGGCAGCCATGGAGGAGTCACAGAGACTTGCCTACTCCCCATTGGGTGGCAGTGGGACAAGTTGGGGAAGCAGTCATGTTCTGGAGAGCAAAGTGCTTCAGGAAATCGCCGAGGCTCGGGTGAAGACTATTGCTCAGGTTTGTATTAGGTGGGTGTACCAAACAGGGACAATAGTTGTAGTTAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTTGACTGGGAACTATCAGAAGAGGACCTAGACAAGATCAATCAGACCCCACAGCACAAGACGATACTTAGAGAAGAGTATGTTTCGGCGAATGGACCGTACAAGTCCCTTGAAGAATTCTGGGATGGAGAGCTTAACTCCAAATTCTTCAAGTCCCTTGTATTGTTTATTTTCTTTGCTTTTGTTGTTTGTGGAATTGTGGATTGTGGTGTCACTACAATGTGCCACTCTTTCTTTCTGTTTTTCATTTCTGTTTCCTTTTTCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

313

Amino Acids

35.22

Weight (kDa)

5.61

Isoelectric Point (pI)

30.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 25 - 157 2.4e-20 Aldo/keto reductase family
Aldo_ket_red PF00248 175 - 239 7.2e-10 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 658
AccB7I CCANNNNNTGG 1 cut(s) 494
AciI CCGC 2 cut(s) 122, 404
AcoI YGGCCR 2 cut(s) 49, 207
AcsI RAATTY 2 cut(s) 788, 815
AcuI CTGAAG 2 cut(s) 308, 530
AfaI GTAC 4 cut(s) 344, 401, 605, 773
AfiI CCNNNNNNNGG 4 cut(s) 28, 71, 494, 564
AgsI TTSAA 7 cut(s) 115, 131, 264, 439, 655, 785, 823
AjnI CCWGG 1 cut(s) 385
AluBI AGCT 4 cut(s) 142, 215, 636, 805
AluI AGCT 4 cut(s) 142, 215, 636, 805
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 2 cut(s) 237, 466
AlwNI CAGNNNCTG 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 564
AoxI GGCC 2 cut(s) 49, 207
ApeKI GCWGC 2 cut(s) 8, 452
ApoI RAATTY 2 cut(s) 788, 815
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 5 cut(s) 57, 100, 418, 697, 767
AsuHPI GGTGA 1 cut(s) 580
AsuII TTCGAA 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 564
AvaII GGWCC 5 cut(s) 57, 100, 418, 697, 767
BalI TGGCCA 1 cut(s) 51
BbsI GAAGAC 2 cut(s) 122, 578
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 20, 464
BccI CCATC 1 cut(s) 791
BceAI ACGGC 2 cut(s) 180, 188
BciT130I CCWGG 1 cut(s) 387
BcoDI GTCTC 2 cut(s) 237, 466
BfaI CTAG 2 cut(s) 240, 701
BfuAI ACCTGC 1 cut(s) 658
BisI GCNGC 2 cut(s) 9, 453
BlsI GCNGC 2 cut(s) 10, 454
Bme1390I CCNGG 1 cut(s) 387
Bme18I GGWCC 5 cut(s) 57, 100, 418, 697, 767
BmeT110I CYCGRG 1 cut(s) 564
BmgT120I GGNCC 5 cut(s) 57, 100, 418, 697, 767
BmiI GGNNCC 2 cut(s) 40, 102
BmrFI CCNGG 1 cut(s) 387
BmrI ACTGGG 1 cut(s) 688
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 688
BpiI GAAGAC 2 cut(s) 122, 578
BplI GAGNNNNNCTC 2 cut(s) 794, 826
BpmI CTGGAG 2 cut(s) 28, 551
Bpu10I CCTNAGC 1 cut(s) 582
Bpu14I TTCGAA 1 cut(s) 334
BsaAI YACGTR 1 cut(s) 197
BsaBI GATNNNNATC 2 cut(s) 285, 354
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 5 cut(s) 204, 223, 386, 456, 558
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 71, 494, 564
Bse1I ACTGG 3 cut(s) 45, 371, 683
Bse8I GATNNNNATC 2 cut(s) 285, 354
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 5 cut(s) 204, 223, 386, 456, 558
BseGI GGATG 2 cut(s) 286, 802
BseJI GATNNNNATC 2 cut(s) 285, 354
BseLI CCNNNNNNNGG 4 cut(s) 28, 71, 494, 564
BseMII CTCAG 2 cut(s) 195, 596
BseNI ACTGG 3 cut(s) 45, 371, 683
BseRI GAGGAG 2 cut(s) 31, 476
BseXI GCAGC 2 cut(s) 20, 464
BseYI CCCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 686
BshFI GGCC 2 cut(s) 51, 209
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 564
BslFI GGGAC 4 cut(s) 517, 628, 763, 811
BslI CCNNNNNNNGG 4 cut(s) 28, 71, 494, 564
BsmAI GTCTC 2 cut(s) 237, 466
BsmFI GGGAC 4 cut(s) 517, 628, 763, 811
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 2 cut(s) 51, 209
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 564
Bsp119I TTCGAA 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 2 cut(s) 349, 708
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 2 cut(s) 122, 404
BspANI GGCC 2 cut(s) 51, 209
BspCNI CTCAG 2 cut(s) 194, 595
BspLI GGNNCC 2 cut(s) 40, 102
BspMI ACCTGC 1 cut(s) 658
BspT104I TTCGAA 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 237
BsrI ACTGG 3 cut(s) 45, 371, 683
BssECI CCNNGG 5 cut(s) 204, 223, 386, 456, 558
BssMI GATC 2 cut(s) 349, 708
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 771
Bst6I CTCTTC 3 cut(s) 408, 687, 741
BstAPI GCANNNNNTGC 1 cut(s) 664
BstBAI YACGTR 1 cut(s) 197
BstBI TTCGAA 1 cut(s) 334
BstDEI CTNAG 3 cut(s) 181, 582, 740
BstDSI CCRYGG 2 cut(s) 204, 456
BstF5I GGATG 2 cut(s) 286, 802
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 2 cut(s) 352, 711
BstMAI GTCTC 2 cut(s) 237, 466
BstMBI GATC 2 cut(s) 349, 708
BstMWI GCNNNNNNNGC 1 cut(s) 664
BstNI CCWGG 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 20, 464
BstV2I GAAGAC 2 cut(s) 122, 578
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 2 cut(s) 51, 209
BtgI CCRYGG 2 cut(s) 204, 456
BtsCI GGATG 2 cut(s) 286, 802
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 3 cut(s) 52, 364, 505
BveI ACCTGC 1 cut(s) 658
CaiI CAGNNNCTG 1 cut(s) 89
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 5 cut(s) 57, 100, 418, 697, 767
Csp6I GTAC 4 cut(s) 343, 400, 604, 772
CviAII CATG 3 cut(s) 61, 457, 524
CviQI GTAC 4 cut(s) 343, 400, 604, 772
DdeI CTNAG 3 cut(s) 181, 582, 740
DpnI GATC 2 cut(s) 351, 710
DpnII GATC 2 cut(s) 349, 708
EaeI YGGCCR 2 cut(s) 49, 207
Eam1104I CTCTTC 3 cut(s) 408, 687, 741
EarI CTCTTC 3 cut(s) 408, 687, 741
Eco130I CCWWGG 1 cut(s) 456
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 5 cut(s) 57, 100, 418, 697, 767
Eco57I CTGAAG 2 cut(s) 308, 530
Eco88I CYCGRG 1 cut(s) 564
EcoO109I RGGNCCY 2 cut(s) 418, 697
EcoRI GAATTC 1 cut(s) 788
EcoRII CCWGG 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 3 cut(s) 64, 460, 527
FaiI YATR 8 cut(s) 62, 137, 173, 175, 374, 458, 525, 753
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 4 cut(s) 517, 628, 763, 811
FatI CATG 3 cut(s) 60, 456, 523
FauI CCCGC 1 cut(s) 411
Fnu4HI GCNGC 2 cut(s) 9, 453
FokI GGATG 2 cut(s) 273, 809
Fsp4HI GCNGC 2 cut(s) 9, 453
FspBI CTAG 2 cut(s) 240, 701
GlaI GCGC 1 cut(s) 371
GluI GCNGC 2 cut(s) 9, 453
GsaI CCCAGC 1 cut(s) 146
GsuI CTGGAG 2 cut(s) 28, 551
HaeIII GGCC 2 cut(s) 51, 209
HhaI GCGC 1 cut(s) 372
Hin1II CATG 3 cut(s) 64, 460, 527
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HinfI GANTC 4 cut(s) 190, 328, 361, 464
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 2 cut(s) 400, 604
Hpy188I TCNGA 5 cut(s) 184, 327, 360, 691, 717
Hpy188III TCNNGA 5 cut(s) 128, 240, 290, 530, 548
Hpy8I GTNNAC 2 cut(s) 400, 604
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 1 cut(s) 771
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 1 cut(s) 667
HpyF10VI GCNNNNNNNGC 1 cut(s) 664
HpyF3I CTNAG 3 cut(s) 181, 582, 740
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 3 cut(s) 64, 460, 527
HspAI GCGC 1 cut(s) 370
Kzo9I GATC 2 cut(s) 349, 708
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 2 cut(s) 20, 464
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 240, 701
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 3 cut(s) 146, 465, 883
MalI GATC 2 cut(s) 351, 710
MboI GATC 2 cut(s) 349, 708
MboII GAAGA 8 cut(s) 127, 323, 425, 583, 704, 758, 797, 811
MhlI GDGCHC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 4 cut(s) 392, 788, 815, 867
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 2 cut(s) 184, 473
Mox20I TGGCCA 1 cut(s) 51
MscI TGGCCA 1 cut(s) 51
MseI TTAA 2 cut(s) 630, 807
MslI CAYNNNNRTG 2 cut(s) 65, 890
Msp20I TGGCCA 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 1 cut(s) 664
NcoI CCATGG 1 cut(s) 456
NdeII GATC 2 cut(s) 349, 708
NlaIII CATG 3 cut(s) 64, 460, 527
NlaIV GGNNCC 2 cut(s) 40, 102
NmeAIII GCCGAG 2 cut(s) 51, 583
NmuCI GTSAC 2 cut(s) 465, 883
NspV TTCGAA 1 cut(s) 334
PaqCI CACCTGC 1 cut(s) 658
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 328, 361
PflFI GACNNNGTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 2 cut(s) 10, 454
PleI GAGTC 2 cut(s) 184, 472
PpsI GAGTC 2 cut(s) 184, 472
Ppu21I YACGTR 1 cut(s) 197
PpuMI RGGWCCY 2 cut(s) 418, 697
Psp5II RGGWCCY 2 cut(s) 418, 697
Psp6I CCWGG 1 cut(s) 385
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 2 cut(s) 40, 102
PspPI GGNCC 5 cut(s) 57, 100, 418, 697, 767
PspPPI RGGWCCY 2 cut(s) 418, 697
PstNI CAGNNNCTG 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 4 cut(s) 344, 401, 605, 773
RsaNI GTAC 4 cut(s) 343, 400, 604, 772
RseI CAYNNNNRTG 2 cut(s) 65, 890
SaqAI TTAA 2 cut(s) 630, 807
SatI GCNGC 2 cut(s) 9, 453
Sau3AI GATC 2 cut(s) 349, 708
Sau96I GGNCC 5 cut(s) 57, 100, 418, 697, 767
SchI GAGTC 2 cut(s) 184, 473
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 1 cut(s) 271
SfuI TTCGAA 1 cut(s) 334
SinI GGWCC 5 cut(s) 57, 100, 418, 697, 767
SmiMI CAYNNNNRTG 2 cut(s) 65, 890
Sse9I AATT 4 cut(s) 392, 788, 815, 867
SsiI CCGC 2 cut(s) 122, 404
SspMI CTAG 2 cut(s) 240, 701
StyD4I CCNGG 1 cut(s) 385
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 1 cut(s) 771
TaiI ACGT 1 cut(s) 199
TaqI TCGA 2 cut(s) 159, 334
TaqII GACCGA 1 cut(s) 215
TasI AATT 4 cut(s) 392, 788, 815, 867
TfiI GAWTC 2 cut(s) 328, 361
Tru1I TTAA 2 cut(s) 630, 807
Tru9I TTAA 2 cut(s) 630, 807
TscAI CASTG 3 cut(s) 52, 371, 505
TseFI GTSAC 2 cut(s) 465, 883
TseI GCWGC 2 cut(s) 8, 452
Tsp45I GTSAC 2 cut(s) 465, 883
TspDTI ATGAA 2 cut(s) 244, 907
TspRI CASTG 3 cut(s) 52, 371, 505
Tth111I GACNNNGTC 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 494
VpaK11BI GGWCC 5 cut(s) 57, 100, 418, 697, 767
XapI RAATTY 2 cut(s) 788, 815
XbaI TCTAGA 1 cut(s) 239
XspI CTAG 2 cut(s) 240, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.