Rw4G027720

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000205
Physical Location & Seq
Forward (+)
54307959 .. 54310075
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027720.1

Sequence Viewer

Length: 888 bp
ATGGCAGCAACCAAAATCCCAGAGGTGGTGTTAGGCTCCTCCAGTGGCCAAAGGACCATGCCTGTGCTCGGCTTTGGCACAGCAACTGACTACTTGGACCCGAATGCTTTGAAGACTGCGGTTCTTGAAGCCATAAAGCTGGGTGAAGCCGTGGCCGAAGCTATTAGCCTCGGTCTTATTGCCTCTAGAGACCAAGTGTTCATCACTTCAAAGCTGTGGTGTAATGATGCTCATCCAGACTTGGTCATTCCTGCTCTAAAGAAATCACTTCAGAATCTTCAAATGGAGTACCTTGATCTGTATCTGATTCACTGGCCCATAAGTGGTAAGCCAGGGAAATTAGTGTACCCGCTAACCGAAGAGGACCTTGTGCCATTGGACTTGAAGGGCGTGTGGGCAGCCATGGAGGAGTCACAGAGACTTGGTCTCACCAAATCCATAGGAGTCAGCAATTTCTCTTCCAAAAAGACCGAAAATCTGCTCTCTTTTGCTACTATTCCTCCTTCGGTCAATCAAGTGGAGATGAGCCCATTTTGGCAACAAAAGAAGCTGAGAGACTTCTGCAAGGCTAATGGTGTAGTTGTGACCGCCTACTCCCCATTGGGTGGCAGTGGGACAAGTTGGGGAAGCAGTCATGTTCTGGAGAGCAAAATGCTTCAGGAAATCGCCGAGGCTCGGGTGAAGACTATTGCTCAGGTTTTTGCAGTTAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTTGACTGGGAACTATCAGAAGAGGACCTAGACAAGATCAATCAGATCCCTCAGCACAAGACGATGCTTAGAGAAGAGTATGTTTCGGCGAATGGACCGTACAAGTCCCTTGAAGAATTCTGGGATGGAGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

295

Amino Acids

32.73

Weight (kDa)

5.4

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 49 - 204 4.4e-33 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 736
Acc36I ACCTGC 1 cut(s) 736
AccB7I CCANNNNNTGG 1 cut(s) 605
AciI CCGC 3 cut(s) 119, 350, 588
AclWI GGATC 1 cut(s) 790
AcoI YGGCCR 2 cut(s) 46, 153
AcsI RAATTY 1 cut(s) 866
AcuI CTGAAG 2 cut(s) 254, 641
AfaI GTAC 3 cut(s) 290, 347, 851
AfiI CCNNNNNNNGG 5 cut(s) 25, 68, 323, 605, 675
AgsI TTSAA 7 cut(s) 112, 128, 210, 281, 385, 733, 863
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 6 cut(s) 139, 161, 214, 550, 714, 883
AluI AGCT 6 cut(s) 139, 161, 214, 550, 714, 883
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 4 cut(s) 183, 412, 431, 549
AlwI GGATC 1 cut(s) 790
AlwNI CAGNNNCTG 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 675
AoxI GGCC 3 cut(s) 46, 153, 314
ApeKI GCWGC 2 cut(s) 5, 398
ApoI RAATTY 1 cut(s) 866
AspS9I GGNCC 6 cut(s) 54, 97, 315, 364, 775, 845
AsuHPI GGTGA 3 cut(s) 155, 421, 691
AvaI CYCGRG 1 cut(s) 675
AvaII GGWCC 5 cut(s) 54, 97, 364, 775, 845
BalI TGGCCA 1 cut(s) 48
BanII GRGCYC 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 119, 689
Bbv12I GWGCWC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 801
BbvI GCAGC 2 cut(s) 17, 410
BccI CCATC 1 cut(s) 869
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 4 cut(s) 183, 412, 431, 549
BfaI CTAG 2 cut(s) 186, 779
BfuAI ACCTGC 1 cut(s) 736
BisI GCNGC 2 cut(s) 6, 399
BlsI GCNGC 2 cut(s) 7, 400
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 5 cut(s) 54, 97, 364, 775, 845
BmeT110I CYCGRG 1 cut(s) 675
BmgT120I GGNCC 6 cut(s) 54, 97, 315, 364, 775, 845
BmiI GGNNCC 2 cut(s) 37, 99
BmrFI CCNGG 1 cut(s) 333
BmrI ACTGGG 1 cut(s) 766
BmsI GCATC 2 cut(s) 217, 804
BmuI ACTGGG 1 cut(s) 766
BpiI GAAGAC 2 cut(s) 119, 689
BpmI CTGGAG 2 cut(s) 25, 662
Bpu10I CCTNAGC 2 cut(s) 693, 801
BsaBI GATNNNNATC 2 cut(s) 231, 300
BsaI GGTCTC 2 cut(s) 183, 431
BsaJI CCNNGG 5 cut(s) 150, 169, 332, 402, 669
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 68, 323, 605, 675
Bse1I ACTGG 3 cut(s) 42, 317, 761
Bse8I GATNNNNATC 2 cut(s) 231, 300
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 5 cut(s) 150, 169, 332, 402, 669
BseGI GGATG 2 cut(s) 232, 880
BseJI GATNNNNATC 2 cut(s) 231, 300
BseLI CCNNNNNNNGG 5 cut(s) 25, 68, 323, 605, 675
BseMII CTCAG 3 cut(s) 542, 707, 815
BseNI ACTGG 3 cut(s) 42, 317, 761
BseRI GAGGAG 2 cut(s) 28, 422
BseXI GCAGC 2 cut(s) 17, 410
BseYI CCCAGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 764
BshFI GGCC 3 cut(s) 48, 155, 316
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 675
BslFI GGGAC 2 cut(s) 628, 841
BslI CCNNNNNNNGG 5 cut(s) 25, 68, 323, 605, 675
BsmAI GTCTC 4 cut(s) 183, 412, 431, 549
BsmFI GGGAC 2 cut(s) 628, 841
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 3 cut(s) 48, 155, 316
Bso31I GGTCTC 2 cut(s) 183, 431
BsoBI CYCGRG 1 cut(s) 675
Bsp1286I GDGCHC 2 cut(s) 69, 530
Bsp143I GATC 3 cut(s) 295, 786, 795
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 3 cut(s) 119, 350, 588
BspANI GGCC 3 cut(s) 48, 155, 316
BspCNI CTCAG 3 cut(s) 543, 706, 814
BspLI GGNNCC 2 cut(s) 37, 99
BspMI ACCTGC 1 cut(s) 736
BspPI GGATC 1 cut(s) 790
BspTNI GGTCTC 2 cut(s) 183, 431
BsrI ACTGG 3 cut(s) 42, 317, 761
BssECI CCNNGG 5 cut(s) 150, 169, 332, 402, 669
BssMI GATC 3 cut(s) 295, 786, 795
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 849
Bst6I CTCTTC 4 cut(s) 354, 463, 765, 819
BstAPI GCANNNNNTGC 1 cut(s) 742
BstDEI CTNAG 4 cut(s) 551, 693, 801, 818
BstDSI CCRYGG 2 cut(s) 150, 402
BstF5I GGATG 2 cut(s) 232, 880
BstKTI GATC 3 cut(s) 298, 789, 798
BstMAI GTCTC 4 cut(s) 183, 412, 431, 549
BstMBI GATC 3 cut(s) 295, 786, 795
BstMWI GCNNNNNNNGC 1 cut(s) 742
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 17, 410
BstV2I GAAGAC 2 cut(s) 119, 689
BstX2I RGATCY 1 cut(s) 795
BstXI CCANNNNNNTGG 1 cut(s) 139
BstYI RGATCY 1 cut(s) 795
BsuRI GGCC 3 cut(s) 48, 155, 316
BtgI CCRYGG 2 cut(s) 150, 402
BtsCI GGATG 2 cut(s) 232, 880
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 3 cut(s) 49, 310, 616
BveI ACCTGC 1 cut(s) 736
CaiI CAGNNNCTG 1 cut(s) 86
Cfr13I GGNCC 6 cut(s) 54, 97, 315, 364, 775, 845
Csp6I GTAC 3 cut(s) 289, 346, 850
CviAII CATG 3 cut(s) 58, 403, 635
CviQI GTAC 3 cut(s) 289, 346, 850
DdeI CTNAG 4 cut(s) 551, 693, 801, 818
DpnI GATC 3 cut(s) 297, 788, 797
DpnII GATC 3 cut(s) 295, 786, 795
EaeI YGGCCR 2 cut(s) 46, 153
Eam1104I CTCTTC 4 cut(s) 354, 463, 765, 819
EarI CTCTTC 4 cut(s) 354, 463, 765, 819
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 530
Eco31I GGTCTC 2 cut(s) 183, 431
Eco47I GGWCC 5 cut(s) 54, 97, 364, 775, 845
Eco57I CTGAAG 2 cut(s) 254, 641
Eco88I CYCGRG 1 cut(s) 675
EcoO109I RGGNCCY 2 cut(s) 364, 775
EcoRI GAATTC 1 cut(s) 866
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 3 cut(s) 61, 406, 638
FaiI YATR 7 cut(s) 59, 134, 320, 404, 440, 636, 831
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 2 cut(s) 628, 841
FatI CATG 3 cut(s) 57, 402, 634
FauI CCCGC 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 6, 399
FokI GGATG 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 2 cut(s) 6, 399
FspBI CTAG 2 cut(s) 186, 779
GluI GCNGC 2 cut(s) 6, 399
GsaI CCCAGC 1 cut(s) 143
GsuI CTGGAG 2 cut(s) 25, 662
HaeIII GGCC 3 cut(s) 48, 155, 316
Hin1II CATG 3 cut(s) 61, 406, 638
HinfI GANTC 4 cut(s) 274, 307, 410, 444
HphI GGTGA 3 cut(s) 155, 421, 691
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 4 cut(s) 273, 306, 769, 795
Hpy188III TCNNGA 5 cut(s) 125, 186, 236, 641, 659
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 379, 513
HpyCH4III ACNGT 1 cut(s) 849
HpyCH4V TGCA 3 cut(s) 564, 704, 745
HpyF10VI GCNNNNNNNGC 1 cut(s) 742
HpyF3I CTNAG 4 cut(s) 551, 693, 801, 818
Hsp92II CATG 3 cut(s) 61, 406, 638
Kzo9I GATC 3 cut(s) 295, 786, 795
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 17, 410
LweI GCATC 2 cut(s) 217, 804
MaeI CTAG 2 cut(s) 186, 779
MaeIII GTNAC 2 cut(s) 411, 583
MalI GATC 3 cut(s) 297, 788, 797
MboI GATC 3 cut(s) 295, 786, 795
MboII GAAGA 8 cut(s) 124, 269, 371, 450, 694, 782, 836, 875
MflI RGATCY 1 cut(s) 795
MhlI GDGCHC 2 cut(s) 69, 530
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 3 cut(s) 338, 451, 866
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 2 cut(s) 419, 453
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 2 cut(s) 708, 886
MslI CAYNNNNRTG 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 742
NcoI CCATGG 1 cut(s) 402
NdeII GATC 3 cut(s) 295, 786, 795
NlaIII CATG 3 cut(s) 61, 406, 638
NlaIV GGNNCC 2 cut(s) 37, 99
NmeAIII GCCGAG 2 cut(s) 48, 694
NmuCI GTSAC 2 cut(s) 411, 583
PaqCI CACCTGC 1 cut(s) 736
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 274, 307
PflFI GACNNNGTC 2 cut(s) 242, 423
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 2 cut(s) 7, 400
PleI GAGTC 2 cut(s) 418, 452
PpsI GAGTC 2 cut(s) 418, 452
PpuMI RGGWCCY 2 cut(s) 364, 775
Psp5II RGGWCCY 2 cut(s) 364, 775
Psp6I CCWGG 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 37, 99
PspPI GGNCC 6 cut(s) 54, 97, 315, 364, 775, 845
PspPPI RGGWCCY 2 cut(s) 364, 775
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 795
PsyI GACNNNGTC 2 cut(s) 242, 423
RsaI GTAC 3 cut(s) 290, 347, 851
RsaNI GTAC 3 cut(s) 289, 346, 850
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 2 cut(s) 708, 886
SatI GCNGC 2 cut(s) 6, 399
Sau3AI GATC 3 cut(s) 295, 786, 795
Sau96I GGNCC 6 cut(s) 54, 97, 315, 364, 775, 845
SchI GAGTC 2 cut(s) 419, 453
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 2 cut(s) 69, 530
SfaNI GCATC 2 cut(s) 217, 804
SinI GGWCC 5 cut(s) 54, 97, 364, 775, 845
SmiMI CAYNNNNRTG 1 cut(s) 62
Sse9I AATT 3 cut(s) 338, 451, 866
SsiI CCGC 3 cut(s) 119, 350, 588
SspMI CTAG 2 cut(s) 186, 779
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 849
TaqII GACCGA 3 cut(s) 161, 485, 496
TasI AATT 3 cut(s) 338, 451, 866
TfiI GAWTC 2 cut(s) 274, 307
Tru1I TTAA 2 cut(s) 708, 886
Tru9I TTAA 2 cut(s) 708, 886
TscAI CASTG 3 cut(s) 49, 317, 616
TseFI GTSAC 2 cut(s) 411, 583
TseI GCWGC 2 cut(s) 5, 398
Tsp45I GTSAC 2 cut(s) 411, 583
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 3 cut(s) 49, 317, 616
Tth111I GACNNNGTC 2 cut(s) 242, 423
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 5 cut(s) 54, 97, 364, 775, 845
XapI RAATTY 1 cut(s) 866
XbaI TCTAGA 1 cut(s) 185
XspI CTAG 2 cut(s) 186, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.