RchiOBHm_Chr5g0023771

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000205
Physical Location & Seq
Reverse (-)
18033269 .. 18034220
952 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30361

Sequence Viewer

Length: 582 bp
ATGGAATTTCCCGAGGAGAAGGACCAAATGCCGATGGACTTCAAGGGTGTGTGGGGAGCCATGGAAGAAGCTCAGAGACTTGGCCTCACCAAATCCATTGGAATCAGTAATTTCTCTACCAAGAAGACTCAGAATATGCTCTCTTTTGCTACTATTCCTCCTTCAGTCAACCAAGTTGAGATGAGCCCATTTTGGCAACAAAAGAAGCTCAGAGACTTCTGCAAGGCCAACGGTATAGTTGTGACTGCCTTCCCCCCATTGGGTGCCATAGGAGCCAGTTGGGGTACCAATCATGTTCTCGAAAGCAAAGTGCTCAATGAAATCGCCGAGGCTCGGGGAAAGACTGTTGTTCAGGTGTGCATTAGATGGGTTTATCAGGTAGGAGCAACTCTTGCAGTGAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTCGACTGGGAACTAACAGAAGAGGATCTTGAGAAGATCAATCAAATCCCACAGCGCAAAATGATGGTTCGAGAAGAAGAGTTGGTTACGGCTACCGGACCATACGAGTCCCTTGATGAGTTATGGGATGGAGAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

193

Amino Acids

22.01

Weight (kDa)

5.12

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 14 - 163 1.6e-28 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 427
Acc36I ACCTGC 1 cut(s) 427
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 2 cut(s) 263, 284
AclWI GGATC 1 cut(s) 474
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 3 cut(s) 259, 260, 333
AgsI TTSAA 2 cut(s) 43, 424
AluBI AGCT 3 cut(s) 71, 208, 405
AluI AGCT 3 cut(s) 71, 208, 405
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 70, 207
AlwI GGATC 1 cut(s) 474
Ama87I CYCGRG 2 cut(s) 11, 333
AoxI GGCC 2 cut(s) 82, 225
ApoI RAATTY 1 cut(s) 5
Asp718I GGTACC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 2 cut(s) 22, 539
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 2 cut(s) 11, 333
AvaII GGWCC 2 cut(s) 22, 539
BanI GGYRCC 2 cut(s) 263, 284
BanII GRGCYC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 315
BccI CCATC 4 cut(s) 28, 360, 499, 563
BceAI ACGGC 1 cut(s) 546
BcoDI GTCTC 2 cut(s) 70, 207
BfuAI ACCTGC 1 cut(s) 427
Bme18I GGWCC 2 cut(s) 22, 539
BmeT110I CYCGRG 2 cut(s) 11, 333
BmgT120I GGNCC 2 cut(s) 22, 539
BmiI GGNNCC 4 cut(s) 58, 265, 274, 286
BmrI ACTGGG 1 cut(s) 457
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 12, 60, 327
BsaWI WCCGGW 1 cut(s) 536
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 260, 333
Bse1I ACTGG 2 cut(s) 276, 452
BseDI CCNNGG 3 cut(s) 12, 60, 327
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 3 cut(s) 259, 260, 333
BseMII CTCAG 3 cut(s) 86, 143, 223
BseNI ACTGG 2 cut(s) 276, 452
BseRI GAGGAG 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 455
BshFI GGCC 2 cut(s) 84, 227
BshNI GGYRCC 2 cut(s) 263, 284
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 2 cut(s) 11, 333
BsiSI CCGG 1 cut(s) 537
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 3 cut(s) 259, 260, 333
BsmAI GTCTC 2 cut(s) 70, 207
BsmFI GGGAC 1 cut(s) 535
BsnI GGCC 2 cut(s) 84, 227
BsoBI CYCGRG 2 cut(s) 11, 333
Bsp1286I GDGCHC 2 cut(s) 188, 315
Bsp143I GATC 2 cut(s) 466, 477
Bsp19I CCATGG 1 cut(s) 60
BspANI GGCC 2 cut(s) 84, 227
BspCNI CTCAG 3 cut(s) 85, 142, 222
BspLI GGNNCC 4 cut(s) 58, 265, 274, 286
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 1 cut(s) 474
BspQI GCTCTTC 1 cut(s) 395
BspT107I GGYRCC 2 cut(s) 263, 284
BsrI ACTGG 2 cut(s) 276, 452
BssECI CCNNGG 3 cut(s) 12, 60, 327
BssMI GATC 2 cut(s) 466, 477
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 233, 346
Bst6I CTCTTC 3 cut(s) 395, 456, 513
BstAPI GCANNNNNTGC 2 cut(s) 392, 433
BstDEI CTNAG 3 cut(s) 72, 129, 209
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 574
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 2 cut(s) 469, 480
BstMAI GTCTC 2 cut(s) 70, 207
BstMBI GATC 2 cut(s) 466, 477
BstMWI GCNNNNNNNGC 3 cut(s) 272, 392, 433
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 2 cut(s) 84, 227
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 574
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 402
BveI ACCTGC 1 cut(s) 427
CfoI GCGC 1 cut(s) 498
Cfr13I GGNCC 2 cut(s) 22, 539
Csp6I GTAC 1 cut(s) 285
CviAII CATG 2 cut(s) 61, 293
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 3 cut(s) 72, 129, 209
DpnI GATC 2 cut(s) 468, 479
DpnII GATC 2 cut(s) 466, 477
Eam1104I CTCTTC 3 cut(s) 395, 456, 513
EarI CTCTTC 3 cut(s) 395, 456, 513
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 2 cut(s) 22, 539
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 2 cut(s) 11, 333
EcoT14I CCWWGG 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 64, 296
FaiI YATR 7 cut(s) 62, 137, 236, 269, 294, 544, 565
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 1 cut(s) 535
FatI CATG 2 cut(s) 60, 292
FriOI GRGCYC 1 cut(s) 188
GlaI GCGC 1 cut(s) 497
HaeIII GGCC 2 cut(s) 84, 227
HapII CCGG 1 cut(s) 537
HhaI GCGC 1 cut(s) 498
Hin1II CATG 2 cut(s) 64, 296
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 3 cut(s) 102, 127, 548
HpaII CCGG 1 cut(s) 537
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 75, 132, 212
Hpy188III TCNNGA 4 cut(s) 11, 299, 470, 512
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 3 cut(s) 13, 171, 259
HpyCH4III ACNGT 2 cut(s) 233, 346
HpyCH4V TGCA 4 cut(s) 222, 360, 395, 436
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 392, 433
HpyF3I CTNAG 3 cut(s) 72, 129, 209
Hsp92II CATG 2 cut(s) 64, 296
HspAI GCGC 1 cut(s) 496
KpnI GGTACC 1 cut(s) 288
Kzo9I GATC 2 cut(s) 466, 477
LguI GCTCTTC 1 cut(s) 395
LmnI GCTCC 3 cut(s) 56, 272, 383
LpnPI CCDG 6 cut(s) 289, 338, 362, 422, 433, 550
MaeIII GTNAC 2 cut(s) 241, 526
MalI GATC 2 cut(s) 468, 479
MboI GATC 2 cut(s) 466, 477
MboII GAAGA 7 cut(s) 77, 136, 412, 473, 487, 527, 530
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 2 cut(s) 188, 315
MluCI AATT 2 cut(s) 5, 109
MlyI GAGTC 2 cut(s) 121, 557
MnlI CCTC 6 cut(s) 7, 95, 168, 322, 411, 457
MseI TTAA 1 cut(s) 580
MspI CCGG 1 cut(s) 537
MwoI GCNNNNNNNGC 3 cut(s) 272, 392, 433
NcoI CCATGG 1 cut(s) 60
NdeII GATC 2 cut(s) 466, 477
NlaIII CATG 2 cut(s) 64, 296
NlaIV GGNNCC 4 cut(s) 58, 265, 274, 286
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 241
PaqCI CACCTGC 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 395
PfeI GAWTC 1 cut(s) 102
PleI GAGTC 2 cut(s) 121, 556
PpsI GAGTC 2 cut(s) 121, 556
PspN4I GGNNCC 4 cut(s) 58, 265, 274, 286
PspPI GGNCC 2 cut(s) 22, 539
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 395
SaqAI TTAA 1 cut(s) 580
Sau3AI GATC 2 cut(s) 466, 477
Sau96I GGNCC 2 cut(s) 22, 539
SchI GAGTC 2 cut(s) 121, 557
SduI GDGCHC 2 cut(s) 188, 315
SetI ASST 7 cut(s) 73, 210, 357, 381, 407, 422, 441
SinI GGWCC 2 cut(s) 22, 539
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 2 cut(s) 5, 109
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 233, 346
TaqI TCGA 3 cut(s) 300, 444, 511
TasI AATT 2 cut(s) 5, 109
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 580
Tru9I TTAA 1 cut(s) 580
TscAI CASTG 1 cut(s) 402
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 1 cut(s) 402
VpaK11BI GGWCC 2 cut(s) 22, 539
XapI RAATTY 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.