Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Reverse (-)

921883 .. 922391

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1014700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCATACGAATCTAGGGTTGGAGTACCTTGATCTGTATCTGATTCATTTTCCGGTAAGTTTGAAGCCGGGAAGTGAACATCCCTTTAACCAAGAGGAAGAGGACCTTCTACCCATGGATTTTAAGTCAATATGGGAAGTCATGGAGGAATGTCAGAAGCTTGGCCTCACAAAGTTCATAGGAGTCAGCAACTTCTCATGCAAGAAGCTCGAAATCTTGCTTTCCACAGCTGAAATTCCCCCTGTAGTTAACCAAGTGGAAATGAACCCGGTGTGGCGGCAGAAGAAGCTAATGGAGTTTTGCGAGAGCAAGGGTATAGTTATCACAGCTACTCTCCATTGGGGGGAACTGGAGCACCTTGGGGGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

124

Amino Acids

14.14

Weight (kDa)

5.02

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	4 - 110	2.8e-21	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	234
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	1 cut(s)	64
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	5 cut(s)	160, 208, 230, 289, 329
AluI	AGCT	5 cut(s)	160, 208, 230, 289, 329
Alw21I	GWGCWC	1 cut(s)	357
AoxI	GGCC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	2 cut(s)	69, 269
AvaII	GGWCC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	357
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BcnI	CCSGG	2 cut(s)	69, 269
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	2 cut(s)	69, 269
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmrFI	CCNGG	2 cut(s)	69, 269
BpmI	CTGGAG	1 cut(s)	371
BpuMI	CCSGG	2 cut(s)	69, 269
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	114, 358
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	354
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	114, 358
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseNI	ACTGG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	3 cut(s)	53, 68, 269
BslI	CCNNNNNNNGG	1 cut(s)	343
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	31
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	114, 358
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	2 cut(s)	114, 358
Bst6I	CTCTTC	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	67, 267
BstSFI	CTRYAG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	3 cut(s)	115, 142, 198
CviJI	RGCY	7 cut(s)	67, 160, 165, 208, 230, 289, 329
CviKI_1	RGCY	7 cut(s)	67, 160, 165, 208, 230, 289, 329
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	2 cut(s)	114, 358
Eco47I	GGWCC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	114, 358
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	114, 358
FaeI	CATG	3 cut(s)	118, 145, 201
FaiI	YATR	7 cut(s)	6, 116, 133, 143, 179, 199, 317
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	3 cut(s)	114, 141, 197
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	3 cut(s)	53, 68, 269
Hin1II	CATG	3 cut(s)	118, 145, 201
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	3 cut(s)	10, 43, 183
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	3 cut(s)	53, 68, 269
Hpy166II	GTNNAC	2 cut(s)	77, 250
Hpy188I	TCNGA	2 cut(s)	42, 156
Hpy8I	GTNNAC	2 cut(s)	77, 250
HpyAV	CCTTC	1 cut(s)	116
HpyCH4V	TGCA	2 cut(s)	4, 201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
Hsp92II	CATG	3 cut(s)	118, 145, 201
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	5 cut(s)	66, 81, 255, 282, 335
MaeI	CTAG	1 cut(s)	14
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	110, 295
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	4 cut(s)	88, 94, 139, 176
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	87, 123, 249
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	3 cut(s)	53, 68, 269
MspR9I	CCNGG	2 cut(s)	69, 269
MwoI	GCNNNNNNNGC	1 cut(s)	286
NciI	CCSGG	2 cut(s)	69, 269
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	118, 145, 201
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	10, 43
PkrI	GCNGC	1 cut(s)	279
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	87, 123, 249
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	2 cut(s)	69, 269
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	8 cut(s)	30, 108, 162, 210, 232, 291, 331, 360
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	67, 267
StyI	CCWWGG	2 cut(s)	114, 358
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	234
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	2 cut(s)	10, 43
Tru1I	TTAA	3 cut(s)	87, 123, 249
Tru9I	TTAA	3 cut(s)	87, 123, 249
TspDTI	ATGAA	3 cut(s)	35, 166, 278
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	234
XspI	CTAG	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.