Rmu_sc0001762.1_g000035

Non-functional NADPH-dependent codeinone reductase 2-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001762.1
Physical Location & Seq
Reverse (-)
117096 .. 117425
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001762.1_g000035.1.cds

Sequence Viewer

Length: 330 bp
atgatggcagcaaccaaaatcccagaggtggtgttaggctcctccagtggccaaaggaccatgcctgtgctcggctttggcacggcaactgactacttggacccgaatgctttgaagactgcggttcttgaagccataaagctgggttacagacacttcgacacggcttccatatacacctcagagcagactctaggtgaagccgtggccgaagctattagcctcggtcttattgcctctagagacaaagtgttcatcacttcaaagctgtggtgtaatgatgctcatccagacttggtcattcctgctctaaagaaatcacttcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

11.68

Weight (kDa)

6.05

Isoelectric Point (pI)

21.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 122
AcoI YGGCCR 2 cut(s) 49, 207
AcuI CTGAAG 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 28, 71
AgsI TTSAA 3 cut(s) 115, 131, 264
AluBI AGCT 3 cut(s) 142, 215, 268
AluI AGCT 3 cut(s) 142, 215, 268
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 237
AoxI GGCC 2 cut(s) 49, 207
ApeKI GCWGC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 57, 100
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 2 cut(s) 57, 100
BalI TGGCCA 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 20
BceAI ACGGC 3 cut(s) 99, 180, 188
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 2 cut(s) 194, 240
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme18I GGWCC 2 cut(s) 57, 100
BmgT120I GGNCC 2 cut(s) 57, 100
BmiI GGNNCC 2 cut(s) 40, 102
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 204, 223
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 71
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 204, 223
BseGI GGATG 1 cut(s) 286
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 28, 71
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 142
BshFI GGCC 2 cut(s) 51, 209
BsiHKAI GWGCWC 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 28, 71
BsmAI GTCTC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 2 cut(s) 51, 209
Bsp1286I GDGCHC 1 cut(s) 72
BspACI CCGC 1 cut(s) 122
BspANI GGCC 2 cut(s) 51, 209
BspCNI CTCAG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 40, 102
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 204, 223
BstDEI CTNAG 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 2 cut(s) 51, 209
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 57, 100
CviAII CATG 1 cut(s) 61
DdeI CTNAG 1 cut(s) 181
EaeI YGGCCR 2 cut(s) 49, 207
Eco47I GGWCC 2 cut(s) 57, 100
Eco57I CTGAAG 1 cut(s) 308
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 62, 137, 173, 175
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 2 cut(s) 194, 240
GluI GCNGC 1 cut(s) 9
GsaI CCCAGC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 28
HaeIII GGCC 2 cut(s) 51, 209
Hin1II CATG 1 cut(s) 64
HinfI GANTC 1 cut(s) 190
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 3 cut(s) 128, 240, 290
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 1 cut(s) 64
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 6 cut(s) 36, 58, 78, 128, 303, 318
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 194, 240
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 51
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 5 cut(s) 19, 52, 190, 233, 247
Mox20I TGGCCA 1 cut(s) 51
MscI TGGCCA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 112
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 2 cut(s) 40, 102
NmeAIII GCCGAG 1 cut(s) 51
PctI GAATGC 1 cut(s) 112
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 40, 102
PspPI GGNCC 2 cut(s) 57, 100
PsyI GACNNNGTC 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 65
SatI GCNGC 1 cut(s) 9
Sau96I GGNCC 2 cut(s) 57, 100
SchI GAGTC 1 cut(s) 184
SduI GDGCHC 1 cut(s) 72
SetI ASST 6 cut(s) 30, 144, 182, 199, 217, 270
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 2 cut(s) 57, 100
SmiMI CAYNNNNRTG 1 cut(s) 65
SsiI CCGC 1 cut(s) 122
SspMI CTAG 2 cut(s) 194, 240
TaqI TCGA 1 cut(s) 159
TaqII GACCGA 1 cut(s) 215
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 244
TspRI CASTG 1 cut(s) 52
Tth111I GACNNNGTC 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 57, 100
XbaI TCTAGA 1 cut(s) 239
XspI CTAG 2 cut(s) 194, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.