Prupe.1G245100_v2.0.a1

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000205
Physical Location & Seq
Forward (+)
25844922 .. 25847181
2260 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G245100.1

Sequence Viewer

Length: 1002 bp
ATGGCAAATGCTGCTTCTTCAGCCCATATCCCAGAGGTGGTGCTTGGCTCCTCCGTTGGCCCCAAGAGCATGCCTGTGCTTGCCTTTGGCACAGCAGCTGACAACATACAGCCTAATCTGTTGAAAACAGCAGTTCTTGAGGCCATCAAGCTTGGCTACAGGCACTTTGATACAGCTGCCATTTATGGCTCAGAGCAGACTCTGGGTGAAGCTATAAAAGAAGCACTTAAGCTTGGCCTTGTTGCTTCCAGAGACCAACTCTTCATCACTTCAAAGTTATGGAGCAATGATGCTCACCCTCATCTTGTCATTCCTGCTCTCAAGAAATCACTTGAAAATCTTCAATTGGAGTATCTTGACCTGTATCTCATCCACTTGCCCATCAGTGCCAAGCCAGGAAAATTGATGGTTGGAGAATTGGTGTCCGCACCAGTTGACCTTATGCCCCTGGACTTCAAGGGTGTGTGGGCAGCCATGGAAGAATCTCAGAAACTTGGCCTCACCAAATCAATTGGAGTCAGCAATTTCTCCAGCAAAAAGACTGAAACTATACTCTCTTTTGCTACCATTCCTCCTTCAGTTAATCAAGTGGAGATGAGCCCATTCTGGCAACAGAAGAAGCTAAGAGACTTCTGCAAGGCCAATGGTATAGTTGTGACTGCGTTCTCTCCTTTGGGTGCCATGGGAACCGGCTGGGGTACCAATCATGTTTTGGAAAGCAAAGTGCTTCAGGATATAGCAGAGGCTCGAGGAAAAACAATTGCTCAGGTTTGCATTAGATGGCTGTACCAGGTAGGGGCAACTCTTGCTGTTAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATCTGCAGGTGTTTGACTGGGAGCTATCAGAGGATGACCTTAACAAGATCAATCAAATCCCACAGCACAAAATGATGTTGAAAGAAGAACTGGTTTCGGCTGATGGATCATCATCACCGTACAAATCCGTTGAAGAATTATGGGATGGAGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

334

Amino Acids

36.53

Weight (kDa)

6.19

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 841
Acc36I ACCTGC 1 cut(s) 841
Acc65I GGTACC 1 cut(s) 698
AccB1I GGYRCC 2 cut(s) 677, 698
AciI CCGC 1 cut(s) 426
AclWI GGATC 1 cut(s) 958
AcuI CTGAAG 2 cut(s) 561, 713
AfaI GTAC 3 cut(s) 700, 788, 965
AfiI CCNNNNNNNGG 2 cut(s) 37, 796
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 8 cut(s) 124, 273, 335, 344, 457, 838, 925, 977
AjnI CCWGG 3 cut(s) 394, 447, 789
AluBI AGCT 8 cut(s) 98, 151, 176, 212, 232, 622, 819, 868
AluI AGCT 8 cut(s) 98, 151, 176, 212, 232, 622, 819, 868
Alw26I GTCTC 2 cut(s) 246, 621
AlwI GGATC 1 cut(s) 958
AlwNI CAGNNNCTG 3 cut(s) 98, 202, 847
Ama87I CYCGRG 1 cut(s) 747
AoxI GGCC 5 cut(s) 58, 141, 235, 496, 639
ApeKI GCWGC 4 cut(s) 11, 95, 176, 470
Asp700I GAANNNNTTC 1 cut(s) 339
Asp718I GGTACC 1 cut(s) 698
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 4 cut(s) 218, 287, 493, 951
AvaI CYCGRG 1 cut(s) 747
BanI GGYRCC 2 cut(s) 677, 698
BanII GRGCYC 1 cut(s) 602
BbvI GCAGC 3 cut(s) 107, 163, 482
BccI CCATC 6 cut(s) 152, 389, 400, 774, 941, 983
BciT130I CCWGG 3 cut(s) 396, 449, 791
BcoDI GTCTC 2 cut(s) 246, 621
BfmI CTRYAG 2 cut(s) 157, 848
BfrI CTTAAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 841
BisI GCNGC 4 cut(s) 12, 96, 177, 471
BlsI GCNGC 4 cut(s) 13, 97, 178, 472
Bme1390I CCNGG 3 cut(s) 396, 449, 791
BmeT110I CYCGRG 1 cut(s) 747
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 5 cut(s) 49, 61, 679, 688, 700
BmrFI CCNGG 3 cut(s) 396, 449, 791
BmrI ACTGGG 1 cut(s) 871
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 871
BplI GAGNNNNNCTC 2 cut(s) 243, 275
BpmI CTGGAG 1 cut(s) 514
Bpu10I CCTNAGC 1 cut(s) 765
BpuEI CTTGAG 2 cut(s) 158, 305
BsaBI GATNNNNATC 1 cut(s) 955
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 447, 474, 681
BsaXI ACNNNNNCTCC 4 cut(s) 405, 435, 556, 586
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 796
Bse118I RCCGGY 1 cut(s) 689
Bse1I ACTGG 3 cut(s) 431, 866, 939
Bse3DI GCAATG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 955
BseBI CCWGG 3 cut(s) 396, 449, 791
BseDI CCNNGG 3 cut(s) 447, 474, 681
BseGI GGATG 3 cut(s) 369, 883, 994
BseJI GATNNNNATC 1 cut(s) 955
BseLI CCNNNNNNNGG 2 cut(s) 37, 796
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 3 cut(s) 204, 500, 779
BseNI ACTGG 3 cut(s) 431, 866, 939
BseRI GAGGAG 1 cut(s) 40
BseXI GCAGC 3 cut(s) 107, 163, 482
BseYI CCCAGC 1 cut(s) 693
BshFI GGCC 5 cut(s) 60, 143, 237, 498, 641
BshNI GGYRCC 2 cut(s) 677, 698
BsiHKCI CYCGRG 1 cut(s) 747
BsiSI CCGG 1 cut(s) 690
BslI CCNNNNNNNGG 2 cut(s) 37, 796
BsmAI GTCTC 2 cut(s) 246, 621
BsnI GGCC 5 cut(s) 60, 143, 237, 498, 641
Bso31I GGTCTC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 747
Bsp1286I GDGCHC 1 cut(s) 602
Bsp143I GATC 2 cut(s) 891, 950
Bsp19I CCATGG 2 cut(s) 474, 681
BspACI CCGC 1 cut(s) 426
BspANI GGCC 5 cut(s) 60, 143, 237, 498, 641
BspCNI CTCAG 3 cut(s) 203, 499, 778
BspLI GGNNCC 5 cut(s) 49, 61, 679, 688, 700
BspMAI CTGCAG 1 cut(s) 852
BspMI ACCTGC 1 cut(s) 841
BspPI GGATC 1 cut(s) 958
BspT107I GGYRCC 2 cut(s) 677, 698
BspTI CTTAAG 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 689
BsrI ACTGG 3 cut(s) 431, 866, 939
BssAI RCCGGY 1 cut(s) 689
BssECI CCNNGG 3 cut(s) 447, 474, 681
BssMI GATC 2 cut(s) 891, 950
BssT1I CCWWGG 2 cut(s) 474, 681
Bst2UI CCWGG 3 cut(s) 396, 449, 791
Bst4CI ACNGT 1 cut(s) 963
Bst6I CTCTTC 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 227
BstAPI GCANNNNNTGC 3 cut(s) 11, 806, 847
BstC8I GCNNGC 2 cut(s) 71, 81
BstDEI CTNAG 4 cut(s) 190, 486, 623, 765
BstDSI CCRYGG 2 cut(s) 474, 681
BstF5I GGATG 3 cut(s) 369, 883, 994
BstKTI GATC 2 cut(s) 894, 953
BstMAI GTCTC 2 cut(s) 246, 621
BstMBI GATC 2 cut(s) 891, 950
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 66, 806, 847
BstNI CCWGG 3 cut(s) 396, 449, 791
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 394, 447, 789
BstSFI CTRYAG 2 cut(s) 157, 848
BstV1I GCAGC 3 cut(s) 107, 163, 482
BsuRI GGCC 5 cut(s) 60, 143, 237, 498, 641
BtgI CCRYGG 2 cut(s) 474, 681
BtsCI GGATG 3 cut(s) 369, 883, 994
BtsIMutI CAGTG 1 cut(s) 391
BveI ACCTGC 1 cut(s) 841
Cac8I GCNNGC 2 cut(s) 71, 81
CaiI CAGNNNCTG 3 cut(s) 98, 202, 847
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 1 cut(s) 59
CsiI ACCWGGT 1 cut(s) 789
Csp6I GTAC 3 cut(s) 699, 787, 964
CviAII CATG 4 cut(s) 70, 475, 682, 707
CviQI GTAC 3 cut(s) 699, 787, 964
DdeI CTNAG 4 cut(s) 190, 486, 623, 765
DpnI GATC 2 cut(s) 893, 952
DpnII GATC 2 cut(s) 891, 950
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 474, 681
Eco24I GRGCYC 1 cut(s) 602
Eco31I GGTCTC 1 cut(s) 246
Eco57I CTGAAG 2 cut(s) 561, 713
Eco88I CYCGRG 1 cut(s) 747
EcoRII CCWGG 3 cut(s) 394, 447, 789
EcoT14I CCWWGG 2 cut(s) 474, 681
EcoT38I GRGCYC 1 cut(s) 602
ErhI CCWWGG 2 cut(s) 474, 681
FaeI CATG 4 cut(s) 73, 478, 685, 710
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 4 cut(s) 69, 474, 681, 706
Fnu4HI GCNGC 4 cut(s) 12, 96, 177, 471
FokI GGATG 2 cut(s) 356, 890
FriOI GRGCYC 1 cut(s) 602
Fsp4HI GCNGC 4 cut(s) 12, 96, 177, 471
GluI GCNGC 4 cut(s) 12, 96, 177, 471
GsaI CCCAGC 1 cut(s) 697
GsuI CTGGAG 1 cut(s) 514
HaeIII GGCC 5 cut(s) 60, 143, 237, 498, 641
HapII CCGG 1 cut(s) 690
Hin1II CATG 4 cut(s) 73, 478, 685, 710
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 2 cut(s) 149, 230
HinfI GANTC 4 cut(s) 199, 482, 516, 844
HpaII CCGG 1 cut(s) 690
HphI GGTGA 4 cut(s) 218, 287, 493, 951
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 3 cut(s) 193, 489, 874
Hpy188III TCNNGA 5 cut(s) 137, 249, 322, 356, 731
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 1 cut(s) 585
HpyCH4III ACNGT 1 cut(s) 963
HpyCH4V TGCA 3 cut(s) 636, 774, 850
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 66, 806, 847
HpyF3I CTNAG 4 cut(s) 190, 486, 623, 765
Hsp92II CATG 4 cut(s) 73, 478, 685, 710
KpnI GGTACC 1 cut(s) 702
Kzo9I GATC 2 cut(s) 891, 950
LmnI GCTCC 3 cut(s) 53, 282, 865
Lsp1109I GCAGC 3 cut(s) 107, 163, 482
LweI GCATC 1 cut(s) 280
MabI ACCWGGT 1 cut(s) 789
MaeIII GTNAC 1 cut(s) 655
MalI GATC 2 cut(s) 893, 952
MboI GATC 2 cut(s) 891, 950
MboII GAAGA 7 cut(s) 9, 253, 332, 491, 628, 941, 989
MfeI CAATTG 3 cut(s) 344, 510, 759
MhlI GDGCHC 1 cut(s) 602
MluCI AATT 7 cut(s) 344, 401, 416, 510, 523, 759, 980
MlyI GAGTC 2 cut(s) 193, 525
MmeI TCCRAC 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 4 cut(s) 228, 582, 813, 885
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 2 cut(s) 98, 176
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 1 cut(s) 690
MspR9I CCNGG 3 cut(s) 396, 449, 791
MunI CAATTG 3 cut(s) 344, 510, 759
MvaI CCWGG 3 cut(s) 396, 449, 791
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 66, 806, 847
NcoI CCATGG 2 cut(s) 474, 681
NdeII GATC 2 cut(s) 891, 950
NlaIII CATG 4 cut(s) 73, 478, 685, 710
NlaIV GGNNCC 5 cut(s) 49, 61, 679, 688, 700
NmuCI GTSAC 1 cut(s) 655
NspI RCATGY 1 cut(s) 73
PaeI GCATGC 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 747
PaqCI CACCTGC 1 cut(s) 841
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 482, 844
PkrI GCNGC 4 cut(s) 13, 97, 178, 472
PleI GAGTC 2 cut(s) 193, 524
PpsI GAGTC 2 cut(s) 193, 524
Psp6I CCWGG 3 cut(s) 394, 447, 789
PspFI CCCAGC 1 cut(s) 693
PspGI CCWGG 3 cut(s) 394, 447, 789
PspN4I GGNNCC 5 cut(s) 49, 61, 679, 688, 700
PspPI GGNCC 1 cut(s) 59
PspXI VCTCGAGB 1 cut(s) 747
PstI CTGCAG 1 cut(s) 852
PstNI CAGNNNCTG 3 cut(s) 98, 202, 847
PvuII CAGCTG 2 cut(s) 98, 176
RsaI GTAC 3 cut(s) 700, 788, 965
RsaNI GTAC 3 cut(s) 699, 787, 964
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 4 cut(s) 228, 582, 813, 885
SatI GCNGC 4 cut(s) 12, 96, 177, 471
Sau3AI GATC 2 cut(s) 891, 950
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 2 cut(s) 193, 525
ScrFI CCNGG 3 cut(s) 396, 449, 791
SduI GDGCHC 1 cut(s) 602
SexAI ACCWGGT 1 cut(s) 789
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 2 cut(s) 157, 848
Sfr274I CTCGAG 1 cut(s) 747
SlaI CTCGAG 1 cut(s) 747
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 4 cut(s) 137, 227, 320, 747
SmoI CTYRAG 4 cut(s) 137, 227, 320, 747
SphI GCATGC 1 cut(s) 73
Sse9I AATT 7 cut(s) 344, 401, 416, 510, 523, 759, 980
SsiI CCGC 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 394, 447, 789
StyI CCWWGG 2 cut(s) 474, 681
TaaI ACNGT 1 cut(s) 963
TaqI TCGA 1 cut(s) 748
TasI AATT 7 cut(s) 344, 401, 416, 510, 523, 759, 980
TfiI GAWTC 2 cut(s) 482, 844
Tru1I TTAA 4 cut(s) 228, 582, 813, 885
Tru9I TTAA 4 cut(s) 228, 582, 813, 885
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 1 cut(s) 655
TseI GCWGC 4 cut(s) 11, 95, 176, 470
Tsp45I GTSAC 1 cut(s) 655
TspDTI ATGAA 1 cut(s) 253
TspGWI ACGGA 2 cut(s) 43, 961
TspRI CASTG 1 cut(s) 391
Vha464I CTTAAG 1 cut(s) 227
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 709
XhoI CTCGAG 1 cut(s) 747
XmnI GAANNNNTTC 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.