Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Reverse (-)

15362747 .. 15363802

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00012490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCGATCAGAGTTGGCTACAGACATTTTGACACAGCCGCTCTTTACCAGACGGAGCAGAACCTCGGTGAAGCCCATTTCGGAAGCTCTTTCTCTTGGCCTCATCGAATCCCGGCAAGACCTCTTCATCACTTCCAAGCTGTGGTGCAGTGATGCTCACCCCCACCGTGGAGATGAACCCGCTTTGGCAGCAGAGAAAGCTAAGAGAGTTTTGCCAGAAAAATGGTATACTAATCATGGCCTACTCTCCTTTGGGAGCAAAAGGAACACCTTGGGTATCAAATGGCCTGGAGTCATGAAATCTGAGACGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

104

Amino Acids

11.76

Weight (kDa)

9.91

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccBSI	CCGCTC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	1 cut(s)	310
AciI	CCGC	2 cut(s)	38, 180
AfiI	CCNNNNNNNGG	2 cut(s)	141, 167
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	3 cut(s)	86, 139, 200
AluI	AGCT	3 cut(s)	86, 139, 200
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	3 cut(s)	97, 238, 284
ApeKI	GCWGC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	2 cut(s)	79, 149
BbvI	GCAGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	313
BfmI	CTRYAG	1 cut(s)	18
BisI	GCNGC	2 cut(s)	38, 189
BlsI	GCNGC	2 cut(s)	39, 190
Bme1390I	CCNGG	2 cut(s)	112, 288
BmrFI	CCNGG	2 cut(s)	112, 288
BmsI	GCATC	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	63, 166, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 167
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	63, 166, 270
BseLI	CCNNNNNNNGG	2 cut(s)	141, 167
BseMII	CTCAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	3 cut(s)	99, 240, 286
BsiSI	CCGG	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	141, 167
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsnI	GGCC	3 cut(s)	99, 240, 286
Bsp143I	GATC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	38, 180
BspANI	GGCC	3 cut(s)	99, 240, 286
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	63, 166, 270
BssMI	GATC	1 cut(s)	5
BssNAI	GTATAC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	270
Bst1107I	GTATAC	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	201, 303
BstDSI	CCRYGG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	8
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 197
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	110, 286
BstSFI	CTRYAG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	200
BstXI	CCANNNNNNTGG	1 cut(s)	222
BstZ17I	GTATAC	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	99, 240, 286
BtgI	CCRYGG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	154
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	1 cut(s)	312
CviAII	CATG	2 cut(s)	236, 295
CviJI	RGCY	9 cut(s)	17, 37, 73, 86, 99, 139, 200, 240, 286
CviKI_1	RGCY	9 cut(s)	17, 37, 73, 86, 99, 139, 200, 240, 286
DdeI	CTNAG	2 cut(s)	201, 303
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	2 cut(s)	239, 298
FaiI	YATR	3 cut(s)	228, 237, 296
FatI	CATG	2 cut(s)	235, 294
FauI	CCCGC	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	2 cut(s)	38, 189
Fsp4HI	GCNGC	2 cut(s)	38, 189
FspBI	CTAG	1 cut(s)	313
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	2 cut(s)	38, 189
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	99, 240, 286
HapII	CCGG	1 cut(s)	112
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	2 cut(s)	239, 298
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	107, 291
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	2 cut(s)	79, 149
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	3 cut(s)	10, 82, 304
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 197
HpyF3I	CTNAG	2 cut(s)	201, 303
Hsp92II	CATG	2 cut(s)	239, 298
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	5
LmnI	GCTCC	2 cut(s)	54, 255
LpnPI	CCDG	5 cut(s)	61, 125, 228, 273, 300
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	313
MalI	GATC	1 cut(s)	7
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	115
MlyI	GAGTC	1 cut(s)	300
MnlI	CCTC	3 cut(s)	73, 110, 131
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	112, 288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	188, 197
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	239, 298
PagI	TCATGA	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	39, 190
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
SatI	GCNGC	2 cut(s)	38, 189
Sau3AI	GATC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	2 cut(s)	112, 288
SetI	ASST	6 cut(s)	65, 88, 123, 141, 202, 272
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	18
SsiI	CCGC	2 cut(s)	38, 180
SspMI	CTAG	1 cut(s)	313
StyD4I	CCNGG	2 cut(s)	110, 286
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	105
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	107
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	115, 189, 311
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	227
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.