Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Reverse (-)

16887161 .. 16890374

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG096900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGAAGATAAGCAATATTCCGGAGTTGGCGCTAACCGTGGTCCCAAATAGTATTGCAAGTGATAAAAGCAGTATTCCGGTGCTAGGTTTAGGAACGGCTGCATATCCTTTTGTTGCCTCTGAAGCAGCAAAAGAAGCCATTCTCACTGCAATCAAAGTCGGCTACAGACATTTTGATACCGCTGCTGCTTACCAGACGGAGCCAGTTCTTGGTGAAGCCATTGCCGAAGCTCTTTCACTTGGCCTCGTCAAATCCAGGGATGAGCTTTTTGTTACTTCCAAGCTTTGGTTGACGGATGCACACCATCACCTTGTCCTGCCTGCCATTCATAAGACACTCAAGAATCTAGGATTGGAATACCTAGATTTGTATCTCATTCATTGGCCTATGAGTTTGGAGCCGGGAAGCTATGACATACCTTGGAAGAAAGAGCATCTTCTTCCTATGGACTTCAAGTCAGTGTGGGAAGCAATGGAAGAGTGCCAGAAGCTAGGCCTCACCAAGGCAATAGGAGTCAGCAATTTCTCATGCAAAAAGATTGAAATCTTGCTTTCCACTGCAAAAATCCCTCCTGCAGTCAACCAAGTGGAGATGAACCCGCTATGGCAGCAGAAAAAGCTGAGAGAGTTTTGTGAAAGAAAAGGTATAATCATCACTGCCTACTCTCCTTTGGGGGCAAAAGGGACACCGTGGGGAACAAATGGAGTGATGGAATGTGAGGCGCTCAAACAAATTGCTGAAGCAAAAAGGAAAACTCTTGCTCAGGTTAAGTATTACATGCTAAATTTCCGATTTCTATCCTTAAATATGTACGTACGTTTATTCAGATGCAGATCTTTCATTTCGATTAATTCCCTCGTTTTAATCAAAACTGTGGCTAAAATTTTTGCATGTGGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

301

Amino Acids

33.6

Weight (kDa)

8.97

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	29 - 227	1.6e-46	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	212, 288
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	2 cut(s)	183, 602
AcsI	RAATTY	2 cut(s)	787, 885
AcuI	CTGAAG	2 cut(s)	144, 762
AfaI	GTAC	2 cut(s)	815, 819
AfiI	CCNNNNNNNGG	4 cut(s)	86, 212, 288, 505
AgsI	TTSAA	2 cut(s)	457, 545
AhdI	GACNNNNNGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	6 cut(s)	233, 268, 286, 411, 493, 622
AluI	AGCT	6 cut(s)	233, 268, 286, 411, 493, 622
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	3 cut(s)	244, 386, 496
ApeKI	GCWGC	5 cut(s)	101, 128, 185, 188, 610
ApoI	RAATTY	2 cut(s)	787, 885
AseI	ATTAAT	1 cut(s)	852
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	2 cut(s)	34, 727
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	3 cut(s)	227, 302, 493
AvaII	GGWCC	1 cut(s)	43
BbvI	GCAGC	5 cut(s)	88, 140, 172, 175, 622
BccI	CCATC	2 cut(s)	315, 706
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	405
BfaI	CTAG	4 cut(s)	86, 350, 365, 494
BfmI	CTRYAG	2 cut(s)	166, 576
BfoI	RGCGCY	2 cut(s)	35, 728
BglII	AGATCT	1 cut(s)	836
BisI	GCNGC	5 cut(s)	102, 129, 186, 189, 611
BlsI	GCNGC	5 cut(s)	103, 130, 187, 190, 612
Bme1390I	CCNGG	2 cut(s)	259, 405
Bme18I	GGWCC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	3 cut(s)	45, 204, 402
BmrFI	CCNGG	2 cut(s)	259, 405
BmsI	GCATC	3 cut(s)	289, 445, 821
Bpu10I	CCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	817
BsaBI	GATNNNNATC	4 cut(s)	372, 545, 799, 835
BsaJI	CCNNGG	5 cut(s)	39, 258, 422, 504, 692
BsaWI	WCCGGW	2 cut(s)	22, 79
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 212, 288, 505
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	2 cut(s)	222, 480
Bse8I	GATNNNNATC	4 cut(s)	372, 545, 799, 835
BseAI	TCCGGA	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	5 cut(s)	39, 258, 422, 504, 692
BseGI	GGATG	2 cut(s)	268, 304
BseJI	GATNNNNATC	4 cut(s)	372, 545, 799, 835
BseLI	CCNNNNNNNGG	4 cut(s)	86, 212, 288, 505
BseMI	GCAATG	2 cut(s)	222, 480
BseMII	CTCAG	2 cut(s)	614, 779
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	5 cut(s)	88, 140, 172, 175, 622
BshFI	GGCC	3 cut(s)	246, 388, 498
BsiSI	CCGG	3 cut(s)	23, 80, 404
BsiWI	CGTACG	1 cut(s)	817
BslFI	GGGAC	2 cut(s)	29, 700
BslI	CCNNNNNNNGG	4 cut(s)	86, 212, 288, 505
BsmFI	GGGAC	2 cut(s)	29, 700
BsnI	GGCC	3 cut(s)	246, 388, 498
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	836, 899
BspACI	CCGC	2 cut(s)	183, 602
BspANI	GGCC	3 cut(s)	246, 388, 498
BspCNI	CTCAG	2 cut(s)	615, 778
BspEI	TCCGGA	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	902
BspLI	GGNNCC	3 cut(s)	45, 204, 402
BspMAI	CTGCAG	1 cut(s)	580
BsrDI	GCAATG	2 cut(s)	222, 480
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	5 cut(s)	39, 258, 422, 504, 692
BssMI	GATC	2 cut(s)	836, 899
BssT1I	CCWWGG	2 cut(s)	422, 504
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	40, 693, 877
Bst6I	CTCTTC	1 cut(s)	474
BstBAI	YACGTR	1 cut(s)	817
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	623, 765
BstDSI	CCRYGG	2 cut(s)	39, 692
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	268, 304
BstH2I	RGCGCY	2 cut(s)	35, 728
BstHHI	GCGC	2 cut(s)	34, 727
BstKTI	GATC	2 cut(s)	839, 902
BstMBI	GATC	2 cut(s)	836, 899
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 137, 610, 619
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	2 cut(s)	784, 897
BstSCI	CCNGG	2 cut(s)	257, 403
BstSFI	CTRYAG	2 cut(s)	166, 576
BstSNI	TACGTA	1 cut(s)	817
BstV1I	GCAGC	5 cut(s)	88, 140, 172, 175, 622
BstX2I	RGATCY	1 cut(s)	836
BstYI	RGATCY	1 cut(s)	836
BsuRI	GGCC	3 cut(s)	246, 388, 498
BtgI	CCRYGG	2 cut(s)	39, 692
BtsCI	GGATG	2 cut(s)	268, 304
BtsI	GCAGTG	3 cut(s)	147, 558, 657
BtsIMutI	CAGTG	4 cut(s)	147, 468, 558, 657
Cac8I	GCNNGC	1 cut(s)	324
CciI	TCATGA	1 cut(s)	902
CfoI	GCGC	2 cut(s)	34, 727
Cfr13I	GGNCC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	814, 818
CviAII	CATG	4 cut(s)	531, 781, 894, 903
CviQI	GTAC	2 cut(s)	814, 818
DdeI	CTNAG	2 cut(s)	623, 765
DpnI	GATC	2 cut(s)	838, 901
DpnII	GATC	2 cut(s)	836, 899
DriI	GACNNNNNGTC	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	474
Eam1105I	GACNNNNNGTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	474
Eco105I	TACGTA	1 cut(s)	817
Eco130I	CCWWGG	2 cut(s)	422, 504
Eco147I	AGGCCT	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	2 cut(s)	144, 762
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	2 cut(s)	422, 504
ErhI	CCWWGG	2 cut(s)	422, 504
FaeI	CATG	4 cut(s)	534, 784, 897, 906
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	2 cut(s)	29, 700
FatI	CATG	4 cut(s)	530, 780, 893, 902
FauI	CCCGC	1 cut(s)	609
Fnu4HI	GCNGC	5 cut(s)	102, 129, 186, 189, 611
FokI	GGATG	2 cut(s)	275, 311
Fsp4HI	GCNGC	5 cut(s)	102, 129, 186, 189, 611
FspBI	CTAG	4 cut(s)	86, 350, 365, 494
GlaI	GCGC	2 cut(s)	33, 726
GluI	GCNGC	5 cut(s)	102, 129, 186, 189, 611
HaeII	RGCGCY	2 cut(s)	35, 728
HaeIII	GGCC	3 cut(s)	246, 388, 498
HapII	CCGG	3 cut(s)	23, 80, 404
HhaI	GCGC	2 cut(s)	34, 727
Hin1II	CATG	4 cut(s)	534, 784, 897, 906
Hin6I	GCGC	2 cut(s)	32, 725
HinP1I	GCGC	2 cut(s)	32, 725
HincII	GTYRAC	2 cut(s)	294, 583
HindII	GTYRAC	2 cut(s)	294, 583
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	2 cut(s)	346, 516
HpaII	CCGG	3 cut(s)	23, 80, 404
HphI	GGTGA	3 cut(s)	227, 302, 493
Hpy166II	GTNNAC	2 cut(s)	294, 583
Hpy188I	TCNGA	3 cut(s)	124, 794, 830
Hpy188III	TCNNGA	3 cut(s)	23, 343, 903
Hpy8I	GTNNAC	2 cut(s)	294, 583
HpyCH4III	ACNGT	3 cut(s)	40, 693, 877
HpyCH4IV	ACGT	2 cut(s)	816, 820
HpyCH4V	TGCA	9 cut(s)	59, 104, 152, 302, 534, 563, 578, 834, 893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 137, 610, 619
HpyF3I	CTNAG	2 cut(s)	623, 765
HpySE526I	ACGT	2 cut(s)	816, 820
Hsp92II	CATG	4 cut(s)	534, 784, 897, 906
HspAI	GCGC	2 cut(s)	32, 725
Kpn2I	TCCGGA	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	836, 899
LmnI	GCTCC	2 cut(s)	202, 400
Lsp1109I	GCAGC	5 cut(s)	88, 140, 172, 175, 622
LweI	GCATC	3 cut(s)	289, 445, 821
MaeI	CTAG	4 cut(s)	86, 350, 365, 494
MaeII	ACGT	2 cut(s)	816, 820
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	838, 901
MboI	GATC	2 cut(s)	836, 899
MboII	GAAGA	5 cut(s)	19, 431, 434, 439, 491
MflI	RGATCY	1 cut(s)	836
MluCI	AATT	5 cut(s)	523, 735, 787, 853, 885
MlyI	GAGTC	1 cut(s)	525
MnlI	CCTC	6 cut(s)	130, 257, 509, 582, 715, 869
MroI	TCCGGA	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	4 cut(s)	771, 806, 852, 866
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	3 cut(s)	23, 80, 404
MspR9I	CCNGG	2 cut(s)	259, 405
MvaI	CCWGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	4 cut(s)	125, 137, 610, 619
NciI	CCSGG	1 cut(s)	405
NdeII	GATC	2 cut(s)	836, 899
NlaIII	CATG	4 cut(s)	534, 784, 897, 906
NlaIV	GGNNCC	3 cut(s)	45, 204, 402
NspI	RCATGY	2 cut(s)	784, 897
PagI	TCATGA	1 cut(s)	902
PceI	AGGCCT	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	346
Pfl23II	CGTACG	1 cut(s)	817
PflMI	CCANNNNNTGG	2 cut(s)	212, 288
PkrI	GCNGC	5 cut(s)	103, 130, 187, 190, 612
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
Ppu21I	YACGTR	1 cut(s)	817
PshBI	ATTAAT	1 cut(s)	852
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspLI	CGTACG	1 cut(s)	817
PspN4I	GGNNCC	3 cut(s)	45, 204, 402
PspPI	GGNCC	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	836
RsaI	GTAC	2 cut(s)	815, 819
RsaNI	GTAC	2 cut(s)	814, 818
SaqAI	TTAA	4 cut(s)	771, 806, 852, 866
SatI	GCNGC	5 cut(s)	102, 129, 186, 189, 611
Sau3AI	GATC	2 cut(s)	836, 899
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	525
ScrFI	CCNGG	2 cut(s)	259, 405
SfaNI	GCATC	3 cut(s)	289, 445, 821
SfcI	CTRYAG	2 cut(s)	166, 576
SinI	GGWCC	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SnaBI	TACGTA	1 cut(s)	817
Sse9I	AATT	5 cut(s)	523, 735, 787, 853, 885
SseBI	AGGCCT	1 cut(s)	498
SsiI	CCGC	2 cut(s)	183, 602
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	4 cut(s)	86, 350, 365, 494
StuI	AGGCCT	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	257, 403
StyI	CCWWGG	2 cut(s)	422, 504
TaaI	ACNGT	3 cut(s)	40, 693, 877
TaiI	ACGT	2 cut(s)	819, 823
TaqI	TCGA	1 cut(s)	848
TasI	AATT	5 cut(s)	523, 735, 787, 853, 885
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	4 cut(s)	771, 806, 852, 866
Tru9I	TTAA	4 cut(s)	771, 806, 852, 866
TscAI	CASTG	4 cut(s)	154, 468, 565, 664
TseI	GCWGC	5 cut(s)	101, 128, 185, 188, 610
TspDTI	ATGAA	4 cut(s)	320, 371, 611, 832
TspGWI	ACGGA	2 cut(s)	215, 311
TspRI	CASTG	4 cut(s)	154, 468, 565, 664
Van91I	CCANNNNNTGG	2 cut(s)	212, 288
VpaK11BI	GGWCC	1 cut(s)	43
VspI	ATTAAT	1 cut(s)	852
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	2 cut(s)	787, 885
XceI	RCATGY	2 cut(s)	784, 897
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	4 cut(s)	86, 350, 365, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.