RLG00000023308

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000205
Physical Location & Seq
Reverse (-)
21644724 .. 21645898
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023308

Sequence Viewer

Length: 972 bp
ATGGCAGCAACCAAAATCCCAGAGGTGGTGTTAGGCTCCTCCAGTGGCCAAAGGACCATGCCTGTGCTCGGCTTTGGCACAGCAACTGACCGCTTGGACCCGAATGCTTTGAAGACTGCGGTTCTTGAAGCCATAAAGCTGGGTTACAGACACTTCGACACGGCTTCCATATACACCTCAGAGCAGACTCTAGGTGAAGCCGTGGCCGAAGCTATTAGCCTCGGTCTTATTGCCTCTAGAGACCAAGTGTTCATCACTTCAAAGCTGTGGTGTAATGATGCTCATCCAGACTTGGTCATTCCTGCTCTAAAGAAATCACTTCAGAATCTTCAAATGGAGTACCTTGATCTGTATCTGATTCACTGGCCCATAAGTGGTAAGCCAGGGAAATTAGTGTACCCGCTAACCGAAGAGGACCTTGTGCCATTGGACTTGAAGGGCGTGTGGGCAGCCATGGAGGAGTCACAGAGACTTGGCCTCACCAAATCCATAGGAGTCAGCAATTTCTCTTCCAAAAAGACTGAAAATCTGCTCTCTTTTGCTACTATTCCTCCTTCTGTCAATCAAGTGGAGATGAGCCCATTTTGGCAACAAAAGAAGCTGAGAGACTTCTGCAAGGCTAATGGTGTAGTTGTGACAGCCTACTCCCCATTGGGTGGCAGTGGGACAAGTTGGGGAAGCAGTCATGTTCTGGAGAGCAAAGTGCTTCAGGAAATCGCCGAGGCTCGGGGGAAGACTATTGCTCAGGTTTGTATTAGGTGGGTGTACCAAACAGGGACAACAGTTGCAGTTAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTTGACTGGGAACTATCAGAAGAGGACCTAGACAAGATCAATCAGATCCCACAGCACAAGATGATACTTAGAGAAGAGTATGTTTCAGCGCATGGACCGTACAAGTCCCTTGAAGAATTCTGGGATGGAGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

324

Amino Acids

35.92

Weight (kDa)

5.77

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 24 - 294 5.3e-58 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 820
Acc36I ACCTGC 1 cut(s) 820
AccB7I CCANNNNNTGG 1 cut(s) 656
AciI CCGC 3 cut(s) 91, 119, 401
AclWI GGATC 1 cut(s) 874
AcoI YGGCCR 2 cut(s) 46, 204
AcsI RAATTY 1 cut(s) 950
AcuI CTGAAG 2 cut(s) 305, 692
AfaI GTAC 4 cut(s) 341, 398, 767, 935
AfiI CCNNNNNNNGG 5 cut(s) 25, 68, 374, 656, 726
AgsI TTSAA 7 cut(s) 112, 128, 261, 332, 436, 817, 947
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 6 cut(s) 139, 212, 265, 601, 798, 967
AluI AGCT 6 cut(s) 139, 212, 265, 601, 798, 967
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 3 cut(s) 234, 463, 600
AlwI GGATC 1 cut(s) 874
AlwNI CAGNNNCTG 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 726
AoxI GGCC 4 cut(s) 46, 204, 365, 475
ApeKI GCWGC 2 cut(s) 5, 449
ApoI RAATTY 1 cut(s) 950
AspLEI GCGC 1 cut(s) 925
AspS9I GGNCC 6 cut(s) 54, 97, 366, 415, 859, 929
AsuHPI GGTGA 2 cut(s) 206, 472
AvaI CYCGRG 1 cut(s) 726
AvaII GGWCC 5 cut(s) 54, 97, 415, 859, 929
BalI TGGCCA 1 cut(s) 48
BanII GRGCYC 1 cut(s) 581
BbsI GAAGAC 2 cut(s) 119, 740
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 17, 461
BccI CCATC 1 cut(s) 953
BceAI ACGGC 2 cut(s) 177, 185
BciT130I CCWGG 1 cut(s) 384
BcoDI GTCTC 3 cut(s) 234, 463, 600
BfaI CTAG 3 cut(s) 191, 237, 863
BfuAI ACCTGC 1 cut(s) 820
BisI GCNGC 2 cut(s) 6, 450
BlsI GCNGC 2 cut(s) 7, 451
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 5 cut(s) 54, 97, 415, 859, 929
BmeT110I CYCGRG 1 cut(s) 726
BmgT120I GGNCC 6 cut(s) 54, 97, 366, 415, 859, 929
BmiI GGNNCC 2 cut(s) 37, 99
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 850
BmsI GCATC 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 850
BpiI GAAGAC 2 cut(s) 119, 740
BpmI CTGGAG 2 cut(s) 25, 713
Bpu10I CCTNAGC 1 cut(s) 744
BsaBI GATNNNNATC 2 cut(s) 282, 351
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 5 cut(s) 201, 220, 383, 453, 720
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 68, 374, 656, 726
Bse1I ACTGG 3 cut(s) 42, 368, 845
Bse8I GATNNNNATC 2 cut(s) 282, 351
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 5 cut(s) 201, 220, 383, 453, 720
BseGI GGATG 2 cut(s) 283, 964
BseJI GATNNNNATC 2 cut(s) 282, 351
BseLI CCNNNNNNNGG 5 cut(s) 25, 68, 374, 656, 726
BseMII CTCAG 3 cut(s) 192, 593, 758
BseNI ACTGG 3 cut(s) 42, 368, 845
BseRI GAGGAG 2 cut(s) 28, 473
BseXI GCAGC 2 cut(s) 17, 461
BseYI CCCAGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 848
BshFI GGCC 4 cut(s) 48, 206, 367, 477
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 726
BslFI GGGAC 3 cut(s) 679, 790, 925
BslI CCNNNNNNNGG 5 cut(s) 25, 68, 374, 656, 726
BsmAI GTCTC 3 cut(s) 234, 463, 600
BsmFI GGGAC 3 cut(s) 679, 790, 925
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 4 cut(s) 48, 206, 367, 477
Bso31I GGTCTC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 726
Bsp1286I GDGCHC 2 cut(s) 69, 581
Bsp143I GATC 3 cut(s) 346, 870, 879
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 3 cut(s) 91, 119, 401
BspANI GGCC 4 cut(s) 48, 206, 367, 477
BspCNI CTCAG 3 cut(s) 191, 594, 757
BspLI GGNNCC 2 cut(s) 37, 99
BspMI ACCTGC 1 cut(s) 820
BspPI GGATC 1 cut(s) 874
BspTNI GGTCTC 1 cut(s) 234
BsrI ACTGG 3 cut(s) 42, 368, 845
BssECI CCNNGG 5 cut(s) 201, 220, 383, 453, 720
BssMI GATC 3 cut(s) 346, 870, 879
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 784, 933
Bst6I CTCTTC 4 cut(s) 405, 514, 849, 903
BstAPI GCANNNNNTGC 1 cut(s) 826
BstDEI CTNAG 4 cut(s) 178, 602, 744, 902
BstDSI CCRYGG 2 cut(s) 201, 453
BstF5I GGATG 2 cut(s) 283, 964
BstHHI GCGC 1 cut(s) 925
BstKTI GATC 3 cut(s) 349, 873, 882
BstMAI GTCTC 3 cut(s) 234, 463, 600
BstMBI GATC 3 cut(s) 346, 870, 879
BstMWI GCNNNNNNNGC 1 cut(s) 826
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 382
BstV1I GCAGC 2 cut(s) 17, 461
BstV2I GAAGAC 2 cut(s) 119, 740
BstX2I RGATCY 1 cut(s) 879
BstXI CCANNNNNNTGG 1 cut(s) 139
BstYI RGATCY 1 cut(s) 879
BsuRI GGCC 4 cut(s) 48, 206, 367, 477
BtgI CCRYGG 2 cut(s) 201, 453
BtsCI GGATG 2 cut(s) 283, 964
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 3 cut(s) 49, 361, 667
BveI ACCTGC 1 cut(s) 820
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 1 cut(s) 925
Cfr13I GGNCC 6 cut(s) 54, 97, 366, 415, 859, 929
Csp6I GTAC 4 cut(s) 340, 397, 766, 934
CviAII CATG 4 cut(s) 58, 454, 686, 926
CviQI GTAC 4 cut(s) 340, 397, 766, 934
DdeI CTNAG 4 cut(s) 178, 602, 744, 902
DpnI GATC 3 cut(s) 348, 872, 881
DpnII GATC 3 cut(s) 346, 870, 879
EaeI YGGCCR 2 cut(s) 46, 204
Eam1104I CTCTTC 4 cut(s) 405, 514, 849, 903
EarI CTCTTC 4 cut(s) 405, 514, 849, 903
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 581
Eco31I GGTCTC 1 cut(s) 234
Eco47I GGWCC 5 cut(s) 54, 97, 415, 859, 929
Eco57I CTGAAG 2 cut(s) 305, 692
Eco88I CYCGRG 1 cut(s) 726
EcoO109I RGGNCCY 2 cut(s) 415, 859
EcoRI GAATTC 1 cut(s) 950
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 4 cut(s) 61, 457, 689, 929
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FaqI GGGAC 3 cut(s) 679, 790, 925
FatI CATG 4 cut(s) 57, 453, 685, 925
FauI CCCGC 1 cut(s) 408
Fnu4HI GCNGC 2 cut(s) 6, 450
FokI GGATG 1 cut(s) 270
FriOI GRGCYC 1 cut(s) 581
Fsp4HI GCNGC 2 cut(s) 6, 450
FspBI CTAG 3 cut(s) 191, 237, 863
GlaI GCGC 1 cut(s) 924
GluI GCNGC 2 cut(s) 6, 450
GsaI CCCAGC 1 cut(s) 143
GsuI CTGGAG 2 cut(s) 25, 713
HaeIII GGCC 4 cut(s) 48, 206, 367, 477
HhaI GCGC 1 cut(s) 925
Hin1II CATG 4 cut(s) 61, 457, 689, 929
Hin6I GCGC 1 cut(s) 923
HinP1I GCGC 1 cut(s) 923
HinfI GANTC 5 cut(s) 187, 325, 358, 461, 495
HphI GGTGA 2 cut(s) 206, 472
Hpy166II GTNNAC 2 cut(s) 397, 766
Hpy188I TCNGA 5 cut(s) 181, 324, 357, 853, 879
Hpy188III TCNNGA 5 cut(s) 125, 237, 287, 692, 710
Hpy8I GTNNAC 2 cut(s) 397, 766
HpyAV CCTTC 2 cut(s) 430, 564
HpyCH4III ACNGT 2 cut(s) 784, 933
HpyCH4V TGCA 3 cut(s) 615, 788, 829
HpyF10VI GCNNNNNNNGC 1 cut(s) 826
HpyF3I CTNAG 4 cut(s) 178, 602, 744, 902
Hsp92II CATG 4 cut(s) 61, 457, 689, 929
HspAI GCGC 1 cut(s) 923
Kzo9I GATC 3 cut(s) 346, 870, 879
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 17, 461
LweI GCATC 1 cut(s) 268
MaeI CTAG 3 cut(s) 191, 237, 863
MaeIII GTNAC 3 cut(s) 143, 462, 634
MalI GATC 3 cut(s) 348, 872, 881
MboI GATC 3 cut(s) 346, 870, 879
MboII GAAGA 8 cut(s) 124, 320, 422, 501, 745, 866, 920, 959
MflI RGATCY 1 cut(s) 879
MhlI GDGCHC 2 cut(s) 69, 581
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 3 cut(s) 389, 502, 950
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 3 cut(s) 181, 470, 504
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 2 cut(s) 792, 970
MslI CAYNNNNRTG 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 384
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 826
NcoI CCATGG 1 cut(s) 453
NdeII GATC 3 cut(s) 346, 870, 879
NlaIII CATG 4 cut(s) 61, 457, 689, 929
NlaIV GGNNCC 2 cut(s) 37, 99
NmeAIII GCCGAG 2 cut(s) 48, 745
NmuCI GTSAC 2 cut(s) 462, 634
PaqCI CACCTGC 1 cut(s) 820
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 325, 358
PflFI GACNNNGTC 1 cut(s) 293
PflMI CCANNNNNTGG 1 cut(s) 656
PkrI GCNGC 2 cut(s) 7, 451
PleI GAGTC 3 cut(s) 181, 469, 503
PpsI GAGTC 3 cut(s) 181, 469, 503
PpuMI RGGWCCY 2 cut(s) 415, 859
Psp5II RGGWCCY 2 cut(s) 415, 859
Psp6I CCWGG 1 cut(s) 382
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 37, 99
PspPI GGNCC 6 cut(s) 54, 97, 366, 415, 859, 929
PspPPI RGGWCCY 2 cut(s) 415, 859
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 879
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 4 cut(s) 341, 398, 767, 935
RsaNI GTAC 4 cut(s) 340, 397, 766, 934
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 2 cut(s) 792, 970
SatI GCNGC 2 cut(s) 6, 450
Sau3AI GATC 3 cut(s) 346, 870, 879
Sau96I GGNCC 6 cut(s) 54, 97, 366, 415, 859, 929
SchI GAGTC 3 cut(s) 181, 470, 504
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 2 cut(s) 69, 581
SfaNI GCATC 1 cut(s) 268
SinI GGWCC 5 cut(s) 54, 97, 415, 859, 929
SmiMI CAYNNNNRTG 1 cut(s) 62
Sse9I AATT 3 cut(s) 389, 502, 950
SsiI CCGC 3 cut(s) 91, 119, 401
SspMI CTAG 3 cut(s) 191, 237, 863
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 784, 933
TaqI TCGA 1 cut(s) 156
TaqII GACCGA 1 cut(s) 212
TasI AATT 3 cut(s) 389, 502, 950
TfiI GAWTC 2 cut(s) 325, 358
Tru1I TTAA 2 cut(s) 792, 970
Tru9I TTAA 2 cut(s) 792, 970
TscAI CASTG 3 cut(s) 49, 368, 667
TseFI GTSAC 2 cut(s) 462, 634
TseI GCWGC 2 cut(s) 5, 449
Tsp45I GTSAC 2 cut(s) 462, 634
TspDTI ATGAA 1 cut(s) 241
TspRI CASTG 3 cut(s) 49, 368, 667
Tth111I GACNNNGTC 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 656
VpaK11BI GGWCC 5 cut(s) 54, 97, 415, 859, 929
XapI RAATTY 1 cut(s) 950
XbaI TCTAGA 1 cut(s) 236
XspI CTAG 3 cut(s) 191, 237, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.