Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Reverse (-)

49831577 .. 49832615

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG392700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGACTTCAAGGGTGTGTGGGAAGTCATGGAGGAATGCCAGAAGCTAGGCCTTACTAAATCTATAGGAATTAGCAACTTCTCATGCAAAAAGATCCAGAACTTGCTAGCCACTGCTAAAATCCCTCCTGCAGTCAACCAAGTGGAGATGAACCCGCTTTGGCAGCAGAGAAAGCTAAGAGAGTTTTGCCACAAAAATGGTATACTAATCACGGCCTACTCTCCTTTGGGAGCAAAAGGAACGCCTTGGGGATCAAATGGAGTCATGGAATGTGAGACGCTCAAGCAGATTGCAGATGCGAAAGGGAAAACCCTTGCCCAGGTTTGTCTGAGGTGGGCATACGAGCAAGAGGTGAGTTTCGTGGTGAAAAGCTTCAGTAAGGAGAGGATTAGTGAAAATGCTGATATATTTGAGTGGGAGCTTTTTCCAGAGGAGGTGGAGAAGATCAATCAAATTCCACAGAAAAGAGGATTTCCTGGATTCGAGTTCGTTGCGGATCATGGCCCTTACAACACTCTTGAGGAGCTGTGGGATGGAGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

181

Amino Acids

20.63

Weight (kDa)

5.36

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	6 - 152	1.3e-31	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	202
AciI	CCGC	2 cut(s)	155, 494
AclWI	GGATC	3 cut(s)	88, 259, 504
AcsI	RAATTY	1 cut(s)	453
AcuI	CTGAAG	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	318, 475
AluBI	AGCT	5 cut(s)	46, 175, 372, 421, 526
AluI	AGCT	5 cut(s)	46, 175, 372, 421, 526
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	3 cut(s)	88, 259, 504
AoxI	GGCC	3 cut(s)	49, 213, 502
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	364, 376
AsuNHI	GCTAGC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	228
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BciT130I	CCWGG	2 cut(s)	320, 477
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	47, 107
BfmI	CTRYAG	2 cut(s)	63, 129
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	320, 477
BmgT120I	GGNCC	1 cut(s)	503
BmrFI	CCNGG	2 cut(s)	320, 477
BmsI	GCATC	1 cut(s)	286
BmtI	GCTAGC	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	266, 539
BsaJI	CCNNGG	2 cut(s)	245, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
BseBI	CCWGG	2 cut(s)	320, 477
BseDI	CCNNGG	2 cut(s)	245, 318
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	320
BseRI	GAGGAG	2 cut(s)	446, 536
BseXI	GCAGC	1 cut(s)	175
BshFI	GGCC	3 cut(s)	51, 215, 504
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	3 cut(s)	51, 215, 504
Bsp143I	GATC	4 cut(s)	93, 251, 444, 496
BspACI	CCGC	2 cut(s)	155, 494
BspANI	GGCC	3 cut(s)	51, 215, 504
BspCNI	CTCAG	1 cut(s)	321
BspMAI	CTGCAG	1 cut(s)	133
BspOI	GCTAGC	1 cut(s)	110
BspPI	GGATC	3 cut(s)	88, 259, 504
BssECI	CCNNGG	2 cut(s)	245, 318
BssMI	GATC	4 cut(s)	93, 251, 444, 496
BssNAI	GTATAC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	245
Bst1107I	GTATAC	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	320, 477
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	176, 329
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	4 cut(s)	96, 254, 447, 499
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	4 cut(s)	93, 251, 444, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 172
BstNI	CCWGG	2 cut(s)	320, 477
BstSCI	CCNGG	2 cut(s)	318, 475
BstSFI	CTRYAG	2 cut(s)	63, 129
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	93
BstXI	CCANNNNNNTGG	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	93
BstZ17I	GTATAC	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	51, 215, 504
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	503
CseI	GACGC	1 cut(s)	286
CviAII	CATG	4 cut(s)	28, 84, 265, 500
CviJI	RGCY	9 cut(s)	46, 51, 110, 175, 215, 372, 421, 504, 526
CviKI_1	RGCY	9 cut(s)	46, 51, 110, 175, 215, 372, 421, 504, 526
DdeI	CTNAG	2 cut(s)	176, 329
DpnI	GATC	4 cut(s)	95, 253, 446, 498
DpnII	GATC	4 cut(s)	93, 251, 444, 496
Eco130I	CCWWGG	1 cut(s)	245
Eco147I	AGGCCT	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	358
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoRII	CCWGG	2 cut(s)	318, 475
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	4 cut(s)	31, 87, 268, 503
FaiI	YATR	8 cut(s)	29, 65, 85, 203, 266, 340, 407, 501
FatI	CATG	4 cut(s)	27, 83, 264, 499
FauI	CCCGC	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	2 cut(s)	47, 107
GluI	GCNGC	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	51, 215, 504
HgaI	GACGC	1 cut(s)	286
Hin1II	CATG	4 cut(s)	31, 87, 268, 503
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	2 cut(s)	261, 480
HphI	GGTGA	2 cut(s)	364, 376
Hpy166II	GTNNAC	2 cut(s)	136, 203
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	3 cut(s)	97, 428, 518
Hpy8I	GTNNAC	2 cut(s)	136, 203
HpyCH4V	TGCA	3 cut(s)	87, 131, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 172
HpyF3I	CTNAG	2 cut(s)	176, 329
Hsp92II	CATG	4 cut(s)	31, 87, 268, 503
Kzo9I	GATC	4 cut(s)	93, 251, 444, 496
LmnI	GCTCC	3 cut(s)	230, 418, 523
LpnPI	CCDG	8 cut(s)	53, 110, 141, 305, 332, 441, 462, 489
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	47, 107
MalI	GATC	4 cut(s)	95, 253, 446, 498
MboI	GATC	4 cut(s)	93, 251, 444, 496
MboII	GAAGA	1 cut(s)	454
MflI	RGATCY	1 cut(s)	93
MluCI	AATT	2 cut(s)	69, 453
MlyI	GAGTC	1 cut(s)	270
MnlI	CCTC	9 cut(s)	25, 135, 324, 343, 378, 424, 427, 461, 514
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	1 cut(s)	544
MslI	CAYNNNNRTG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	320, 477
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	2 cut(s)	320, 477
MwoI	GCNNNNNNNGC	2 cut(s)	163, 172
NdeII	GATC	4 cut(s)	93, 251, 444, 496
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	4 cut(s)	31, 87, 268, 503
PceI	AGGCCT	1 cut(s)	51
PctI	GAATGC	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	480
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	165
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	318, 475
PspGI	CCWGG	2 cut(s)	318, 475
PspPI	GGNCC	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	544
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	4 cut(s)	93, 251, 444, 496
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	2 cut(s)	320, 477
SetI	ASST	9 cut(s)	48, 177, 324, 335, 354, 374, 423, 438, 528
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	2 cut(s)	63, 129
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	2 cut(s)	281, 518
SmoI	CTYRAG	2 cut(s)	281, 518
Sse9I	AATT	2 cut(s)	69, 453
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	2 cut(s)	155, 494
SspMI	CTAG	2 cut(s)	47, 107
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	318, 475
StyI	CCWWGG	1 cut(s)	245
TaqI	TCGA	1 cut(s)	483
TasI	AATT	2 cut(s)	69, 453
TfiI	GAWTC	1 cut(s)	480
Tru1I	TTAA	1 cut(s)	544
Tru9I	TTAA	1 cut(s)	544
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	118
XagI	CCTNNNNNAGG	1 cut(s)	317
XapI	RAATTY	1 cut(s)	453
XmiI	GTMKAC	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	2 cut(s)	47, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.