Rroxscaffold_3G00233890

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
20235409 .. 20237264
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233890.1

Sequence Viewer

Length: 1014 bp
ATGGGAAGCTTTCTAGTGGCCGAAAATGTCTCATCACGTTCCATCAACATTCCAGTGTTGCCACTGGTCTCATCATCAACTGGGAAAACAAGCAACATTCCTGTTCTAGGTTTCGGAACTGCTACGTACCCTTTTGTTGGCTCAGAACTCGCAAAAGAAGCCATTCTAGATGCGATCAGACTTGGCTACAGACATTTTGACACAGCCGCTCTTTACCAGACGGAGCGGAATCTCGGTGAAGCCATTTCGGAAGCTCTTTCTCTTGGCCTCATCGAATCCCGGGAAGACCTCTTCATCACTTCTAAGCTGTGGTGCAGTGATGCTCACCCCCACCGTGTCTTACCTGCCATTCGCACTACGCTCAAGAACCTAGGACTGGAGTACCTTGATCTATATCTCATTCACTGGCCGGCGAGTGTGAAGCCGGGAAACTATGACTTTCCGTTTGACAAAGAGTACCTTCTGCCAATGGACTGCAAGGGTGTGTGGGAAGTCATGGAGGAATGCCAGAAGCTAGGCCTCACTAAATCTATAGGAGTTAGCAACTTCTCATGCAAAAAGATCCAGAACTTGCTAGCCACTGCTAAAATCCCTCCTGCAGTCAACCAAGTGGAGATGAACCCGCTTTGGCAGCAGAGAAAGCTAAGAGAGTTTTGCCACAAAAATGGTATACTAATCACGGCCTACTCTCCTTTGGGAGCAAAAGGAACGCCTTGGGGATCAAATGGAGTCATGGAATGTGAGACGCTCAAGCAGATTGCAGATGCGAAAGGGAAAACCCTTGCCCAGGTTTGTCTGAGGTGGGCATACGAGCAAGAGGTGAGTTTCGTGGTGAAAAGCTTCAGTAAGGAGAGGATTAGTGAAAATGCTGATATATTTGAGTGGGAGCTTTTTCCAGAGGAGGTGGAGAAGATCAATCAAATTCCACAGAAAAGAGGATTTCCTGGATTCGAGTTCGTTGCGGATCATGGCCCTTACAACACTCTTGAGGAGCTGTGGGATGGAGAGATTTAA

Protein Analysis

337

Amino Acids

37.81

Weight (kDa)

5.43

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 36 - 308 5.2e-57 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AccBSI CCGCTC 2 cut(s) 209, 226
AccI GTMKAC 1 cut(s) 670
AciI CCGC 4 cut(s) 207, 226, 623, 962
AclWI GGATC 3 cut(s) 556, 727, 972
AcoI YGGCCR 2 cut(s) 18, 407
AcsI RAATTY 1 cut(s) 921
AcuI CTGAAG 1 cut(s) 826
AfaI GTAC 3 cut(s) 128, 383, 458
AfiI CCNNNNNNNGG 4 cut(s) 107, 137, 376, 787
AjnI CCWGG 2 cut(s) 786, 943
AluBI AGCT 8 cut(s) 9, 254, 307, 514, 643, 840, 889, 994
AluI AGCT 8 cut(s) 9, 254, 307, 514, 643, 840, 889, 994
Alw26I GTCTC 3 cut(s) 34, 73, 737
AlwI GGATC 3 cut(s) 556, 727, 972
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 6 cut(s) 18, 265, 407, 517, 681, 970
ApeKI GCWGC 1 cut(s) 631
ApoI RAATTY 1 cut(s) 921
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
Asp700I GAANNNNTTC 2 cut(s) 162, 839
AspA2I CCTAGG 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 971
AsuC2I CCSGG 3 cut(s) 280, 281, 426
AsuHPI GGTGA 4 cut(s) 248, 317, 832, 844
AsuNHI GCTAGC 1 cut(s) 574
AvaI CYCGRG 1 cut(s) 279
AvrII CCTAGG 1 cut(s) 370
BaeI ACNNNNGTAYC 2 cut(s) 365, 398
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 643
BccI CCATC 2 cut(s) 50, 995
BceAI ACGGC 1 cut(s) 696
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 2 cut(s) 788, 945
BcnI CCSGG 3 cut(s) 280, 281, 426
BcoDI GTCTC 3 cut(s) 34, 73, 737
BfaI CTAG 6 cut(s) 14, 107, 167, 371, 515, 575
BfmI CTRYAG 3 cut(s) 187, 531, 597
BfuAI ACCTGC 1 cut(s) 352
BisI GCNGC 2 cut(s) 207, 632
BlnI CCTAGG 1 cut(s) 370
BlsI GCNGC 2 cut(s) 208, 633
Bme1390I CCNGG 5 cut(s) 280, 281, 426, 788, 945
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 971
BmrFI CCNGG 5 cut(s) 280, 281, 426, 788, 945
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 3 cut(s) 160, 310, 754
BmtI GCTAGC 1 cut(s) 578
BmuI ACTGGG 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 398
BpuEI CTTGAG 3 cut(s) 347, 734, 1007
BpuMI CCSGG 3 cut(s) 280, 281, 426
BsaAI YACGTR 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 4 cut(s) 279, 370, 713, 786
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 137, 376, 787
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 5 cut(s) 53, 69, 85, 381, 410
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 2 cut(s) 788, 945
BseDI CCNNGG 4 cut(s) 279, 370, 713, 786
BseGI GGATG 1 cut(s) 1006
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 4 cut(s) 107, 137, 376, 787
BseMII CTCAG 2 cut(s) 156, 788
BseNI ACTGG 5 cut(s) 53, 69, 85, 381, 410
BseRI GAGGAG 2 cut(s) 914, 1004
BseXI GCAGC 1 cut(s) 643
BsgI GTGCAG 1 cut(s) 334
BshFI GGCC 6 cut(s) 20, 267, 409, 519, 683, 972
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 3 cut(s) 280, 410, 425
BslI CCNNNNNNNGG 4 cut(s) 107, 137, 376, 787
BsmAI GTCTC 3 cut(s) 34, 73, 737
BsmBI CGTCTC 1 cut(s) 737
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 6 cut(s) 20, 267, 409, 519, 683, 972
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 279
Bsp143I GATC 6 cut(s) 174, 388, 561, 719, 912, 964
BspACI CCGC 4 cut(s) 207, 226, 623, 962
BspANI GGCC 6 cut(s) 20, 267, 409, 519, 683, 972
BspCNI CTCAG 2 cut(s) 155, 789
BspMAI CTGCAG 1 cut(s) 601
BspMI ACCTGC 1 cut(s) 352
BspOI GCTAGC 1 cut(s) 578
BspPI GGATC 3 cut(s) 556, 727, 972
BspTNI GGTCTC 1 cut(s) 73
BsrBI CCGCTC 2 cut(s) 209, 226
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 5 cut(s) 53, 69, 85, 381, 410
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 4 cut(s) 279, 370, 713, 786
BssMI GATC 6 cut(s) 174, 388, 561, 719, 912, 964
BssNAI GTATAC 1 cut(s) 671
BssT1I CCWWGG 2 cut(s) 370, 713
Bst1107I GTATAC 1 cut(s) 671
Bst2UI CCWGG 2 cut(s) 788, 945
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 411, 576
BstDEI CTNAG 4 cut(s) 142, 303, 644, 797
BstENI CCTNNNNNAGG 2 cut(s) 105, 785
BstF5I GGATG 1 cut(s) 1006
BstKTI GATC 6 cut(s) 177, 391, 564, 722, 915, 967
BstMAI GTCTC 3 cut(s) 34, 73, 737
BstMBI GATC 6 cut(s) 174, 388, 561, 719, 912, 964
BstMWI GCNNNNNNNGC 3 cut(s) 158, 631, 640
BstNI CCWGG 2 cut(s) 788, 945
BstSCI CCNGG 5 cut(s) 278, 279, 424, 786, 943
BstSFI CTRYAG 3 cut(s) 187, 531, 597
BstSNI TACGTA 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 643
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 561
BstXI CCANNNNNNTGG 1 cut(s) 665
BstYI RGATCY 1 cut(s) 561
BstZ17I GTATAC 1 cut(s) 671
BsuRI GGCC 6 cut(s) 20, 267, 409, 519, 683, 972
BtsCI GGATG 1 cut(s) 1006
BtsI GCAGTG 2 cut(s) 322, 579
BtsIMutI CAGTG 5 cut(s) 60, 62, 322, 403, 579
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 2 cut(s) 411, 576
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 971
Cfr9I CCCGGG 1 cut(s) 279
CseI GACGC 1 cut(s) 754
Csp6I GTAC 3 cut(s) 127, 382, 457
CviAII CATG 4 cut(s) 496, 552, 733, 968
CviQI GTAC 3 cut(s) 127, 382, 457
DdeI CTNAG 4 cut(s) 142, 303, 644, 797
DpnI GATC 6 cut(s) 176, 390, 563, 721, 914, 966
DpnII GATC 6 cut(s) 174, 388, 561, 719, 912, 964
EaeI YGGCCR 2 cut(s) 18, 407
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco105I TACGTA 1 cut(s) 126
Eco130I CCWWGG 2 cut(s) 370, 713
Eco147I AGGCCT 1 cut(s) 519
Eco31I GGTCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 826
Eco88I CYCGRG 1 cut(s) 279
EcoNI CCTNNNNNAGG 2 cut(s) 105, 785
EcoRII CCWGG 2 cut(s) 786, 943
EcoT14I CCWWGG 2 cut(s) 370, 713
ErhI CCWWGG 2 cut(s) 370, 713
Esp3I CGTCTC 1 cut(s) 737
FaeI CATG 4 cut(s) 499, 555, 736, 971
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 4 cut(s) 495, 551, 732, 967
FauI CCCGC 1 cut(s) 630
FblI GTMKAC 1 cut(s) 670
Fnu4HI GCNGC 2 cut(s) 207, 632
Fsp4HI GCNGC 2 cut(s) 207, 632
FspBI CTAG 6 cut(s) 14, 107, 167, 371, 515, 575
GluI GCNGC 2 cut(s) 207, 632
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 6 cut(s) 20, 267, 409, 519, 683, 972
HapII CCGG 3 cut(s) 280, 410, 425
HgaI GACGC 1 cut(s) 754
Hin1II CATG 4 cut(s) 499, 555, 736, 971
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HindIII AAGCTT 2 cut(s) 7, 838
HinfI GANTC 4 cut(s) 229, 275, 729, 948
HpaII CCGG 3 cut(s) 280, 410, 425
HphI GGTGA 4 cut(s) 248, 317, 832, 844
Hpy166II GTNNAC 2 cut(s) 604, 671
Hpy188I TCNGA 5 cut(s) 116, 145, 179, 250, 798
Hpy188III TCNNGA 5 cut(s) 167, 364, 565, 896, 986
Hpy8I GTNNAC 2 cut(s) 604, 671
HpyAV CCTTC 1 cut(s) 470
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 2 cut(s) 37, 125
HpyCH4V TGCA 5 cut(s) 315, 477, 555, 599, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 631, 640
HpyF3I CTNAG 4 cut(s) 142, 303, 644, 797
HpySE526I ACGT 2 cut(s) 37, 125
Hsp92II CATG 4 cut(s) 499, 555, 736, 971
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
Kzo9I GATC 6 cut(s) 174, 388, 561, 719, 912, 964
LmnI GCTCC 4 cut(s) 223, 698, 886, 991
Lsp1109I GCAGC 1 cut(s) 643
LweI GCATC 3 cut(s) 160, 310, 754
MaeI CTAG 6 cut(s) 14, 107, 167, 371, 515, 575
MaeII ACGT 2 cut(s) 37, 125
MalI GATC 6 cut(s) 176, 390, 563, 721, 914, 966
MbiI CCGCTC 2 cut(s) 209, 226
MboI GATC 6 cut(s) 174, 388, 561, 719, 912, 964
MboII GAAGA 3 cut(s) 283, 296, 922
MflI RGATCY 1 cut(s) 561
MluCI AATT 1 cut(s) 921
MlyI GAGTC 1 cut(s) 738
MroNI GCCGGC 1 cut(s) 409
MroXI GAANNNNTTC 2 cut(s) 162, 839
MseI TTAA 1 cut(s) 1012
MslI CAYNNNNRTG 2 cut(s) 53, 663
MspI CCGG 3 cut(s) 280, 410, 425
MspR9I CCNGG 5 cut(s) 280, 281, 426, 788, 945
Mva1269I GAATGC 1 cut(s) 509
MvaI CCWGG 2 cut(s) 788, 945
MwoI GCNNNNNNNGC 3 cut(s) 158, 631, 640
NaeI GCCGGC 1 cut(s) 411
NciI CCSGG 3 cut(s) 280, 281, 426
NdeII GATC 6 cut(s) 174, 388, 561, 719, 912, 964
NgoMIV GCCGGC 1 cut(s) 409
NheI GCTAGC 1 cut(s) 574
NlaIII CATG 4 cut(s) 499, 555, 736, 971
PceI AGGCCT 1 cut(s) 519
PctI GAATGC 1 cut(s) 509
PdiI GCCGGC 1 cut(s) 411
PdmI GAANNNNTTC 2 cut(s) 162, 839
PfeI GAWTC 3 cut(s) 229, 275, 948
PfoI TCCNGGA 1 cut(s) 943
PkrI GCNGC 2 cut(s) 208, 633
PleI GAGTC 1 cut(s) 737
PpsI GAGTC 1 cut(s) 737
Ppu21I YACGTR 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 786, 943
PspGI CCWGG 2 cut(s) 786, 943
PspPI GGNCC 1 cut(s) 971
PstI CTGCAG 1 cut(s) 601
PsuI RGATCY 1 cut(s) 561
RsaI GTAC 3 cut(s) 128, 383, 458
RsaNI GTAC 3 cut(s) 127, 382, 457
RseI CAYNNNNRTG 2 cut(s) 53, 663
SaqAI TTAA 1 cut(s) 1012
SatI GCNGC 2 cut(s) 207, 632
Sau3AI GATC 6 cut(s) 174, 388, 561, 719, 912, 964
Sau96I GGNCC 1 cut(s) 971
SchI GAGTC 1 cut(s) 738
ScrFI CCNGG 5 cut(s) 280, 281, 426, 788, 945
SfaNI GCATC 3 cut(s) 160, 310, 754
SfcI CTRYAG 3 cut(s) 187, 531, 597
SmaI CCCGGG 1 cut(s) 281
SmiMI CAYNNNNRTG 2 cut(s) 53, 663
SmlI CTYRAG 3 cut(s) 362, 749, 986
SmoI CTYRAG 3 cut(s) 362, 749, 986
SnaBI TACGTA 1 cut(s) 126
Sse9I AATT 1 cut(s) 921
SseBI AGGCCT 1 cut(s) 519
SsiI CCGC 4 cut(s) 207, 226, 623, 962
SspMI CTAG 6 cut(s) 14, 107, 167, 371, 515, 575
StuI AGGCCT 1 cut(s) 519
StyD4I CCNGG 5 cut(s) 278, 279, 424, 786, 943
StyI CCWWGG 2 cut(s) 370, 713
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 2 cut(s) 40, 128
TaqI TCGA 2 cut(s) 273, 951
TasI AATT 1 cut(s) 921
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 3 cut(s) 229, 275, 948
Tru1I TTAA 1 cut(s) 1012
Tru9I TTAA 1 cut(s) 1012
TscAI CASTG 5 cut(s) 60, 69, 322, 410, 586
TseI GCWGC 1 cut(s) 631
TspDTI ATGAA 2 cut(s) 283, 632
TspGWI ACGGA 2 cut(s) 236, 432
TspMI CCCGGG 1 cut(s) 279
TspRI CASTG 5 cut(s) 60, 69, 322, 410, 586
XagI CCTNNNNNAGG 2 cut(s) 105, 785
XapI RAATTY 1 cut(s) 921
XbaI TCTAGA 1 cut(s) 166
XmaI CCCGGG 1 cut(s) 279
XmaJI CCTAGG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 670
XmnI GAANNNNTTC 2 cut(s) 162, 839
XspI CTAG 6 cut(s) 14, 107, 167, 371, 515, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.