Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

50897344 .. 50898430

Gene Structure 1087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG374500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGAAGCTTTCTAGTAGCCGAAAATGTCTCATCACGTTCCATCAACATTCCGGTGTTGCCACTGGTCTCATCATCAACTGGGAAAACAAGCAACATTCCTGTTTTAGGTTTCGGAACTGCTACATACCCTTTTGTTGTCTCAGAAATCGTAAAAGAAGCCATTCTAGATGCGATCAGACTTGGCTACAGACATTTTGACACAGCCGCTCTTTACCAGACGGAGCGGAATCTCGGTGAAGCCATTTCAGAAGCTCTTTCTCTTGGCCTCATCGAATCCCGGCAAGACCTCTTCATCACTTCTAAGCTGTGGTGCAGTGATGCTCACCCCCACCGTGTCTTACCTGCCATTCGCACTACGCTCAAGAACCTAGGACTGGAGTACCTTGATCTATATCTCATTCACTGGCCGGCGAGTGTGAAGCCCGGAAACTATGACTTTCCGTTTGACAAAGAATACCTTCTTCCAATGGACTTCAAGGGTGTGTGGAAGTCATGGAGGAATGCCAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

171

Amino Acids

19.17

Weight (kDa)

6.91

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	36 - 142	1.6e-20	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AccBSI	CCGCTC	2 cut(s)	209, 226
AciI	CCGC	2 cut(s)	207, 226
AcoI	YGGCCR	1 cut(s)	407
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	2 cut(s)	107, 376
AgsI	TTSAA	1 cut(s)	478
AluBI	AGCT	4 cut(s)	9, 254, 307, 513
AluI	AGCT	4 cut(s)	9, 254, 307, 513
Alw26I	GTCTC	3 cut(s)	34, 73, 145
AoxI	GGCC	2 cut(s)	265, 407
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
Asp700I	GAANNNNTTC	2 cut(s)	162, 459
AspA2I	CCTAGG	1 cut(s)	370
AsuC2I	CCSGG	2 cut(s)	280, 426
AsuHPI	GGTGA	2 cut(s)	248, 317
AvrII	CCTAGG	1 cut(s)	370
BaeI	ACNNNNGTAYC	2 cut(s)	365, 398
BccI	CCATC	1 cut(s)	50
BcnI	CCSGG	2 cut(s)	280, 426
BcoDI	GTCTC	3 cut(s)	34, 73, 145
BfaI	CTAG	4 cut(s)	14, 167, 371, 514
BfmI	CTRYAG	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	207
BlnI	CCTAGG	1 cut(s)	370
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	280, 426
BmrFI	CCNGG	2 cut(s)	280, 426
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	2 cut(s)	160, 310
BmuI	ACTGGG	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	2 cut(s)	280, 426
BsaBI	GATNNNNATC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 376
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	4 cut(s)	69, 85, 381, 410
Bse8I	GATNNNNATC	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	107, 376
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	4 cut(s)	69, 85, 381, 410
BsgI	GTGCAG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	267, 409
BsiSI	CCGG	4 cut(s)	53, 280, 410, 426
BslI	CCNNNNNNNGG	2 cut(s)	107, 376
BsmAI	GTCTC	3 cut(s)	34, 73, 145
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	267, 409
Bso31I	GGTCTC	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	174, 388
BspACI	CCGC	2 cut(s)	207, 226
BspANI	GGCC	2 cut(s)	267, 409
BspCNI	CTCAG	1 cut(s)	155
BspMI	ACCTGC	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	73
BsrBI	CCGCTC	2 cut(s)	209, 226
BsrFI	RCCGGY	1 cut(s)	409
BsrI	ACTGG	4 cut(s)	69, 85, 381, 410
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	2 cut(s)	174, 388
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	2 cut(s)	142, 303
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	177, 391
BstMAI	GTCTC	3 cut(s)	34, 73, 145
BstMBI	GATC	2 cut(s)	174, 388
BstSCI	CCNGG	2 cut(s)	278, 424
BstSFI	CTRYAG	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	267, 409
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	3 cut(s)	62, 322, 403
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	1 cut(s)	495
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	2 cut(s)	142, 303
DpnI	GATC	2 cut(s)	176, 390
DpnII	GATC	2 cut(s)	174, 388
EaeI	YGGCCR	1 cut(s)	407
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	498
FaiI	YATR	4 cut(s)	127, 394, 435, 496
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	1 cut(s)	494
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	4 cut(s)	14, 167, 371, 514
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	267, 409
HapII	CCGG	4 cut(s)	53, 280, 410, 426
Hin1II	CATG	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	2 cut(s)	229, 275
HpaII	CCGG	4 cut(s)	53, 280, 410, 426
HphI	GGTGA	2 cut(s)	248, 317
Hpy188I	TCNGA	4 cut(s)	116, 145, 179, 250
Hpy188III	TCNNGA	2 cut(s)	167, 364
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	315
HpyF3I	CTNAG	2 cut(s)	142, 303
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	498
KroI	GCCGGC	1 cut(s)	409
KroNI	GCCGGC	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	174, 388
LmnI	GCTCC	1 cut(s)	223
LweI	GCATC	2 cut(s)	160, 310
MaeI	CTAG	4 cut(s)	14, 167, 371, 514
MaeII	ACGT	1 cut(s)	37
MalI	GATC	2 cut(s)	176, 390
MbiI	CCGCTC	2 cut(s)	209, 226
MboI	GATC	2 cut(s)	174, 388
MboII	GAAGA	2 cut(s)	283, 455
MnlI	CCTC	3 cut(s)	278, 299, 492
MroNI	GCCGGC	1 cut(s)	409
MroXI	GAANNNNTTC	2 cut(s)	162, 459
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	4 cut(s)	53, 280, 410, 426
MspR9I	CCNGG	2 cut(s)	280, 426
Mva1269I	GAATGC	1 cut(s)	508
NaeI	GCCGGC	1 cut(s)	411
NciI	CCSGG	2 cut(s)	280, 426
NdeII	GATC	2 cut(s)	174, 388
NgoMIV	GCCGGC	1 cut(s)	409
NlaIII	CATG	1 cut(s)	498
PctI	GAATGC	1 cut(s)	508
PdiI	GCCGGC	1 cut(s)	411
PdmI	GAANNNNTTC	2 cut(s)	162, 459
PfeI	GAWTC	2 cut(s)	229, 275
PkrI	GCNGC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	53
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	174, 388
ScrFI	CCNGG	2 cut(s)	280, 426
SfaNI	GCATC	2 cut(s)	160, 310
SfcI	CTRYAG	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SsiI	CCGC	2 cut(s)	207, 226
SspMI	CTAG	4 cut(s)	14, 167, 371, 514
StyD4I	CCNGG	2 cut(s)	278, 424
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	273
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	2 cut(s)	229, 275
TscAI	CASTG	3 cut(s)	69, 322, 410
TspDTI	ATGAA	1 cut(s)	283
TspGWI	ACGGA	2 cut(s)	236, 432
TspRI	CASTG	3 cut(s)	69, 322, 410
XagI	CCTNNNNNAGG	1 cut(s)	105
XbaI	TCTAGA	1 cut(s)	166
XmaJI	CCTAGG	1 cut(s)	370
XmnI	GAANNNNTTC	2 cut(s)	162, 459
XspI	CTAG	4 cut(s)	14, 167, 371, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.