Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

74188076 .. 74189630

Gene Structure 1555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34375

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCTTGTTCCATAAGCAATGTTAATTTGCTTACATCATCATCAACTGGAAAAACAAGCAACATTCCTGTTCTAGGTTTCGTAACTGCTAGATACCCTTTTGTTGGCTCAGAAATCATAAAAGAAGCCATTCTCGATGTGATCAGAGTTGGCTACAGACATTTTGACACAGCCACTCTTTACCAGACGGAGCAGAGTCTCGGTGAAGCCATTTCGGAAGCTCTTTCTCTTGGCCTCATCGAATCCCGGCAAGACCTAGCTCTTCATCACTTCCAAGCTGTGGTGCAGAACCTAGGACTGGAGTACCTTGATCTATATCTCATTCACTGGCCGGTCAGTGTGAAGCTGGGAAACTATGACTTTCAGTTTGACAAAGAGTACCTTCTTCCAATCGACTTCAAGGGTGTGTGGGAAGTCATGGAGGAATGCCAGAAGCTAGGCCTCACTAAATCTATAGGAGTTAGCAACTTCTCATGCAAAAAGATCCAGAACTTGCTAGCCACTGCTAAAATCCCTCCTGCAGTCAACCAAAAAGCTAGGAGAGCAAAAGGAACACCTTGGGGATCAAATGGAGTCATGGAATCTGAGACGCTCACGCAGATTGCAGATGCGAAAGGGAAAACCCTTGCCCAGGTTTGTCTGAGGTGGGCATACGAGCAAGAGGTAAGTTTCGTGGTGAAAAGCTTCAGTAAGGAGAGGATTAGTGAAAATGGTGATATATTTGACTGGGAGCTTTGTCCAGAGGAGGTGGAGAAGATCAATCAAATTCCACAGAAAAGAGGATTTCCTGCATTCGACTTCGTTGCGGATCATGGCCCTTACAAGACTCTTGAGGAACTGTGGGATGGAGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

285

Amino Acids

32.02

Weight (kDa)

5.18

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	42 - 177	1.9e-19	Aldo/keto reductase family
Aldo_ket_red	PF00248	194 - 256	1.9e-07	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	280
AciI	CCGC	1 cut(s)	806
AclWI	GGATC	3 cut(s)	478, 571, 816
AcoI	YGGCCR	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	765
AcuI	CTGAAG	1 cut(s)	670
AfaI	GTAC	2 cut(s)	305, 380
AfiI	CCNNNNNNNGG	5 cut(s)	74, 104, 280, 298, 631
AgsI	TTSAA	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	8 cut(s)	221, 260, 278, 346, 436, 536, 684, 733
AluI	AGCT	8 cut(s)	221, 260, 278, 346, 436, 536, 684, 733
Alw26I	GTCTC	2 cut(s)	203, 581
AlwI	GGATC	3 cut(s)	478, 571, 816
AoxI	GGCC	4 cut(s)	232, 329, 439, 814
ApoI	RAATTY	1 cut(s)	765
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
Asp700I	GAANNNNTTC	2 cut(s)	129, 683
AspA2I	CCTAGG	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	815
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	215, 688, 725
AsuNHI	GCTAGC	1 cut(s)	496
AvrII	CCTAGG	1 cut(s)	292
BaeI	ACNNNNGTAYC	2 cut(s)	287, 320
BccI	CCATC	1 cut(s)	839
BcgI	CGANNNNNNTGC	2 cut(s)	785, 819
BciT130I	CCWGG	1 cut(s)	632
BclI	TGATCA	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	247
BcoDI	GTCTC	2 cut(s)	203, 581
BfaI	CTAG	7 cut(s)	74, 90, 257, 293, 437, 497, 537
BfmI	CTRYAG	3 cut(s)	154, 453, 519
BlnI	CCTAGG	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	247, 632
BmgT120I	GGNCC	1 cut(s)	815
BmrFI	CCNGG	2 cut(s)	247, 632
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	1 cut(s)	598
BmtI	GCTAGC	1 cut(s)	500
BmuI	ACTGGG	1 cut(s)	736
BpmI	CTGGAG	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	3 cut(s)	292, 557, 630
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 104, 280, 298, 631
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	4 cut(s)	52, 303, 332, 731
Bse3DI	GCAATG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	3 cut(s)	292, 557, 630
BseGI	GGATG	1 cut(s)	850
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	5 cut(s)	74, 104, 280, 298, 631
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	3 cut(s)	123, 576, 632
BseNI	ACTGG	4 cut(s)	52, 303, 332, 731
BseRI	GAGGAG	1 cut(s)	758
BseYI	CCCAGC	1 cut(s)	346
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	4 cut(s)	234, 331, 441, 816
BsiSI	CCGG	2 cut(s)	247, 332
BslI	CCNNNNNNNGG	5 cut(s)	74, 104, 280, 298, 631
BsmAI	GTCTC	2 cut(s)	203, 581
BsmBI	CGTCTC	1 cut(s)	581
BsmI	GAATGC	2 cut(s)	431, 791
BsnI	GGCC	4 cut(s)	234, 331, 441, 816
Bsp143I	GATC	6 cut(s)	141, 310, 483, 563, 756, 808
BspACI	CCGC	1 cut(s)	806
BspANI	GGCC	4 cut(s)	234, 331, 441, 816
BspCNI	CTCAG	3 cut(s)	122, 577, 633
BspMAI	CTGCAG	1 cut(s)	523
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	3 cut(s)	478, 571, 816
BspQI	GCTCTTC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	4 cut(s)	52, 303, 332, 731
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	3 cut(s)	292, 557, 630
BssMI	GATC	6 cut(s)	141, 310, 483, 563, 756, 808
BssT1I	CCWWGG	2 cut(s)	292, 557
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	1 cut(s)	840
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	3 cut(s)	109, 585, 641
BstENI	CCTNNNNNAGG	2 cut(s)	72, 629
BstF5I	GGATG	1 cut(s)	850
BstKTI	GATC	6 cut(s)	144, 313, 486, 566, 759, 811
BstMAI	GTCTC	2 cut(s)	203, 581
BstMBI	GATC	6 cut(s)	141, 310, 483, 563, 756, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	632
BstSCI	CCNGG	2 cut(s)	245, 630
BstSFI	CTRYAG	3 cut(s)	154, 453, 519
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuRI	GGCC	4 cut(s)	234, 331, 441, 816
BtsCI	GGATG	1 cut(s)	850
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	3 cut(s)	325, 343, 501
Cac8I	GCNNGC	1 cut(s)	498
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	815
CseI	GACGC	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	304, 379
CviAII	CATG	4 cut(s)	418, 474, 577, 812
CviQI	GTAC	2 cut(s)	304, 379
DdeI	CTNAG	3 cut(s)	109, 585, 641
DpnI	GATC	6 cut(s)	143, 312, 485, 565, 758, 810
DpnII	GATC	6 cut(s)	141, 310, 483, 563, 756, 808
EaeI	YGGCCR	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	2 cut(s)	292, 557
Eco147I	AGGCCT	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	670
EcoNI	CCTNNNNNAGG	2 cut(s)	72, 629
EcoRII	CCWGG	1 cut(s)	630
EcoT14I	CCWWGG	2 cut(s)	292, 557
ErhI	CCWWGG	2 cut(s)	292, 557
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	4 cut(s)	421, 477, 580, 815
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FatI	CATG	4 cut(s)	417, 473, 576, 811
FbaI	TGATCA	1 cut(s)	141
FspBI	CTAG	7 cut(s)	74, 90, 257, 293, 437, 497, 537
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	4 cut(s)	234, 331, 441, 816
HapII	CCGG	2 cut(s)	247, 332
HgaI	GACGC	1 cut(s)	598
Hin1II	CATG	4 cut(s)	421, 477, 580, 815
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	1 cut(s)	682
HinfI	GANTC	5 cut(s)	196, 242, 573, 581, 826
HpaII	CCGG	2 cut(s)	247, 332
HphI	GGTGA	3 cut(s)	215, 688, 725
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	5 cut(s)	112, 146, 217, 586, 642
Hpy188III	TCNNGA	4 cut(s)	134, 487, 740, 830
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	1 cut(s)	840
HpyCH4V	TGCA	5 cut(s)	286, 477, 521, 605, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	3 cut(s)	109, 585, 641
Hsp92II	CATG	4 cut(s)	421, 477, 580, 815
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	6 cut(s)	141, 310, 483, 563, 756, 808
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	190, 730
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	7 cut(s)	74, 90, 257, 293, 437, 497, 537
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	6 cut(s)	143, 312, 485, 565, 758, 810
MboI	GATC	6 cut(s)	141, 310, 483, 563, 756, 808
MboII	GAAGA	3 cut(s)	254, 377, 766
MflI	RGATCY	1 cut(s)	483
MluCI	AATT	2 cut(s)	25, 765
MlyI	GAGTC	3 cut(s)	205, 582, 820
MroXI	GAANNNNTTC	2 cut(s)	129, 683
MseI	TTAA	2 cut(s)	24, 856
MspI	CCGG	2 cut(s)	247, 332
MspR9I	CCNGG	2 cut(s)	247, 632
Mva1269I	GAATGC	2 cut(s)	431, 791
MvaI	CCWGG	1 cut(s)	632
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	247
NdeII	GATC	6 cut(s)	141, 310, 483, 563, 756, 808
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	4 cut(s)	421, 477, 580, 815
PceI	AGGCCT	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	267
PctI	GAATGC	2 cut(s)	431, 791
PdmI	GAANNNNTTC	2 cut(s)	129, 683
PfeI	GAWTC	2 cut(s)	242, 581
PflMI	CCANNNNNTGG	1 cut(s)	280
PleI	GAGTC	3 cut(s)	204, 581, 820
PpsI	GAGTC	3 cut(s)	204, 581, 820
Psp6I	CCWGG	1 cut(s)	630
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	630
PspPI	GGNCC	1 cut(s)	815
PstI	CTGCAG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	483
RsaI	GTAC	2 cut(s)	305, 380
RsaNI	GTAC	2 cut(s)	304, 379
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	24, 856
Sau3AI	GATC	6 cut(s)	141, 310, 483, 563, 756, 808
Sau96I	GGNCC	1 cut(s)	815
SchI	GAGTC	3 cut(s)	205, 582, 820
ScrFI	CCNGG	2 cut(s)	247, 632
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	3 cut(s)	154, 453, 519
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
Sse9I	AATT	2 cut(s)	25, 765
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	1 cut(s)	806
SspMI	CTAG	7 cut(s)	74, 90, 257, 293, 437, 497, 537
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	245, 630
StyI	CCWWGG	2 cut(s)	292, 557
TaaI	ACNGT	1 cut(s)	840
TaqI	TCGA	4 cut(s)	135, 240, 393, 795
TasI	AATT	2 cut(s)	25, 765
TfiI	GAWTC	2 cut(s)	242, 581
Tru1I	TTAA	2 cut(s)	24, 856
Tru9I	TTAA	2 cut(s)	24, 856
TscAI	CASTG	3 cut(s)	332, 343, 508
TspDTI	ATGAA	1 cut(s)	254
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	332, 343, 508
Van91I	CCANNNNNTGG	1 cut(s)	280
XagI	CCTNNNNNAGG	2 cut(s)	72, 629
XapI	RAATTY	1 cut(s)	765
XmaJI	CCTAGG	1 cut(s)	292
XmnI	GAANNNNTTC	2 cut(s)	129, 683
XspI	CTAG	7 cut(s)	74, 90, 257, 293, 437, 497, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.