Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

63483401 .. 63492944

Gene Structure 9544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG430400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAAGATTGTCAGAAGCTAGGCCTCACCAAGTCCATTGGAGTCTGCAATTTTTCATGCAAAAAGATCCAAACCTTGCTTGCCGCTGCCAAAATCCCTCCTGCAGTCAATCAAAACAAGTTGAGAGAATTGTGTAAGAGAAAGGTTATAATTGTCACGGCCTACTCTCCTTTGGGGGGAAAAGGAACACCTTGGGGATCAAAAGCGGTAATGGAATGTGAAGTCCTCAAACAGATTGTAGATGCAAAAGGAAAATCTCTTGCTCAGGTTTGTTTGAGGTGGCTTTATGAGCAAGGGGTGAGTTTTGTGGTGAAGAGCTTCAATAAGGACAGGATCAAAGAAAATGTGGAAATATTTGACTGGAAGCTAAATCCTGAGGTGCTGGAAAAGATAGATCAAATCCGGCAGAAAAGGGGATATCTCGCATTTGAATTCATAGCAGATCAAGGCCCTTACAAGTCTCCTGAAGAGCTTTGGGATGGAGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

163

Amino Acids

18.45

Weight (kDa)

8.98

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	1 - 135	2.6e-19	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AciI	CCGC	2 cut(s)	84, 206
AclWI	GGATC	3 cut(s)	61, 205, 341
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	486
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	322, 431
AluBI	AGCT	4 cut(s)	19, 318, 367, 472
AluI	AGCT	4 cut(s)	19, 318, 367, 472
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	3 cut(s)	61, 205, 341
AoxI	GGCC	3 cut(s)	22, 159, 448
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	19, 310, 322
AxyI	CCTNAGG	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	2 cut(s)	84, 87
BlsI	GCNGC	2 cut(s)	85, 88
BmgT120I	GGNCC	1 cut(s)	449
BmsI	GCATC	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	365
Bse21I	CCTNAGG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	2 cut(s)	278, 366
BseNI	ACTGG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	3 cut(s)	24, 161, 450
BsiSI	CCGG	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	465
BsnI	GGCC	3 cut(s)	24, 161, 450
Bsp143I	GATC	5 cut(s)	66, 197, 333, 394, 442
BspACI	CCGC	2 cut(s)	84, 206
BspANI	GGCC	3 cut(s)	24, 161, 450
BspCNI	CTCAG	2 cut(s)	277, 367
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	3 cut(s)	61, 205, 341
BspQI	GCTCTTC	2 cut(s)	308, 462
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	5 cut(s)	66, 197, 333, 394, 442
BssT1I	CCWWGG	1 cut(s)	191
Bst6I	CTCTTC	2 cut(s)	308, 462
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	264, 375
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	5 cut(s)	69, 200, 336, 397, 445
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	5 cut(s)	66, 197, 333, 394, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	24, 161, 450
BtsCI	GGATG	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	449
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	8 cut(s)	19, 24, 161, 283, 318, 367, 450, 472
CviKI_1	RGCY	8 cut(s)	19, 24, 161, 283, 318, 367, 450, 472
DdeI	CTNAG	2 cut(s)	264, 375
DpnI	GATC	5 cut(s)	68, 199, 335, 396, 444
DpnII	GATC	5 cut(s)	66, 197, 333, 394, 442
Eam1104I	CTCTTC	2 cut(s)	308, 462
EarI	CTCTTC	2 cut(s)	308, 462
Eco130I	CCWWGG	1 cut(s)	191
Eco147I	AGGCCT	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	486
Eco81I	CCTNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	1 cut(s)	60
FaiI	YATR	4 cut(s)	58, 149, 288, 437
FatI	CATG	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	84, 87
Fsp4HI	GCNGC	2 cut(s)	84, 87
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	2 cut(s)	84, 87
HaeIII	GGCC	3 cut(s)	24, 161, 450
HapII	CCGG	1 cut(s)	403
Hin1II	CATG	1 cut(s)	60
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	3 cut(s)	19, 310, 322
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	374, 464
HpyCH4V	TGCA	4 cut(s)	48, 60, 104, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	2 cut(s)	264, 375
Hsp92II	CATG	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	66, 197, 333, 394, 442
LguI	GCTCTTC	2 cut(s)	308, 462
LpnPI	CCDG	8 cut(s)	114, 251, 316, 346, 368, 387, 416, 477
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	5 cut(s)	68, 199, 335, 396, 444
MboI	GATC	5 cut(s)	66, 197, 333, 394, 442
MboII	GAAGA	3 cut(s)	17, 325, 479
MflI	RGATCY	1 cut(s)	66
MluCI	AATT	4 cut(s)	49, 128, 150, 431
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	5 cut(s)	35, 108, 236, 270, 370
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	490
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	289
NdeII	GATC	5 cut(s)	66, 197, 333, 394, 442
NlaIII	CATG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	24
PciSI	GCTCTTC	2 cut(s)	308, 462
PdmI	GAANNNNTTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	85, 88
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	66
SapI	GCTCTTC	2 cut(s)	308, 462
SaqAI	TTAA	1 cut(s)	490
SatI	GCNGC	2 cut(s)	84, 87
Sau3AI	GATC	5 cut(s)	66, 197, 333, 394, 442
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	102
Sse9I	AATT	4 cut(s)	49, 128, 150, 431
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	84, 206
SspI	AATATT	1 cut(s)	354
SspMI	CTAG	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	191
TasI	AATT	4 cut(s)	49, 128, 150, 431
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	490
Tru9I	TTAA	1 cut(s)	490
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	45, 424
XapI	RAATTY	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.