RLG00000035956

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
74020197 .. 74021925
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035956

Sequence Viewer

Length: 867 bp
ATGGATGATGCTACCGATCAATCATCAATAGAAAGCATAAGCATTCCGGAGTTACCACTACTAGCCTCCCCAAGTAGCTACAGTATTCCTGTGCAAGGTCTAGGAACGGCTGTGTATCCTTTTCGTGCCTCTGAACAAAGTAGAGAAAAAGAAGCCATTCTCAGTGCAATCAAAGTTGGTTACAGACATTTTGATACGGCAGCGGCTTACCAAACTGAGCAAGTTCTCGGTGAAGCTATCGGCCAAGCTATTTCTCTTGGCTTCATCAAATCCCGGGATGAACTTTTTGTTACTTCCAAGCTTTGGTGCTGTGATGCACACCCTCACCGTGTCCTCCCTGCCATTCAGAACACCCTCAAGAATCTGAGATTGGAGTACCTTAACCTTTATCTGATTCATTGGCCTGTGAGTTTGAAGACAGTAAGCTATGACTTTCCTGTTAACAAAGAGCACCTTCTTCCTATAGACTTTAAGGGGGTGTGGGAAGCCATGGAAGAGTGTCAGAAGCTAGGCCTCACCAAGTCCATTGGAGTCTGCAATTTTTCATGCAAAAAGTTCGAAACCTTTCTTGCCACTGCCAAAATCCCATGGCCTCCTGCAGTCAATCAAATTGCAGATGCAAAAGGAAAATCTCTTGCTCAGGTTTGTTTGAGGTGGCTTTATGAGCAAGGGGTGAGTTTTGTGGTGAAGAGCTTCAATAAGGAGAGGATCAAAGAAAATGTGGAAATATCTGACTGGGAGCTAAATCTTGAGGAGTTGGAAAAAATAGATCAAATCCCTCAGAAAAGAGGATATCTCGCATTTGAATTCATAGCAGATCAAGGCCCTTACAAGTCTCCTGAAGAGTTTTGGGATGGGGAAGTTTAA

Protein Analysis

289

Amino Acids

32.61

Weight (kDa)

5.21

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 34 - 197 2.5e-27 Aldo/keto reductase family
Aldo_ket_red PF00248 197 - 259 6e-09 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 716
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 1 cut(s) 806
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 2 cut(s) 95, 303
AgsI TTSAA 3 cut(s) 415, 697, 806
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 8 cut(s) 78, 236, 248, 301, 426, 508, 693, 742
AluI AGCT 8 cut(s) 78, 236, 248, 301, 426, 508, 693, 742
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 1 cut(s) 716
Ama87I CYCGRG 1 cut(s) 273
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 5 cut(s) 241, 401, 511, 590, 823
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 806
Asp700I GAANNNNTTC 3 cut(s) 156, 564, 692
AspS9I GGNCC 1 cut(s) 824
AsuC2I CCSGG 2 cut(s) 274, 275
AsuHPI GGTGA 5 cut(s) 242, 317, 508, 685, 697
AsuII TTCGAA 1 cut(s) 558
AvaI CYCGRG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 212
BccI CCATC 1 cut(s) 848
BceAI ACGGC 2 cut(s) 123, 213
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BciVI GTATCC 1 cut(s) 126
BcnI CCSGG 2 cut(s) 274, 275
BcoDI GTCTC 1 cut(s) 840
BfaI CTAG 3 cut(s) 62, 101, 509
BfmI CTRYAG 3 cut(s) 79, 462, 597
BfuI GTATCC 1 cut(s) 126
BisI GCNGC 2 cut(s) 201, 204
BlsI GCNGC 2 cut(s) 202, 205
Bme1390I CCNGG 2 cut(s) 274, 275
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 824
BmrFI CCNGG 2 cut(s) 274, 275
BmrI ACTGGG 1 cut(s) 745
BmsI GCATC 2 cut(s) 304, 607
BmuI ACTGGG 1 cut(s) 745
BpiI GAAGAC 1 cut(s) 422
BplI GAGNNNNNCTC 2 cut(s) 780, 812
Bpu10I CCTNAGC 1 cut(s) 639
Bpu14I TTCGAA 1 cut(s) 558
BpuEI CTTGAG 2 cut(s) 341, 770
BpuMI CCSGG 2 cut(s) 274, 275
BsaJI CCNNGG 3 cut(s) 273, 489, 587
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 303
Bse1I ACTGG 1 cut(s) 740
BseAI TCCGGA 1 cut(s) 46
BseDI CCNNGG 3 cut(s) 273, 489, 587
BseGI GGATG 3 cut(s) 10, 283, 859
BseLI CCNNNNNNNGG 2 cut(s) 95, 303
BseMII CTCAG 5 cut(s) 175, 207, 356, 653, 794
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 1 cut(s) 767
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 5 cut(s) 243, 403, 513, 592, 825
BsiHKAI GWGCWC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 2 cut(s) 47, 274
BslI CCNNNNNNNGG 2 cut(s) 95, 303
BsmAI GTCTC 1 cut(s) 840
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 5 cut(s) 243, 403, 513, 592, 825
BsoBI CYCGRG 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 453
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 4 cut(s) 16, 708, 769, 817
Bsp19I CCATGG 2 cut(s) 489, 587
BspACI CCGC 1 cut(s) 203
BspANI GGCC 5 cut(s) 243, 403, 513, 592, 825
BspCNI CTCAG 5 cut(s) 174, 208, 357, 652, 793
BspEI TCCGGA 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 1 cut(s) 716
BspQI GCTCTTC 1 cut(s) 683
BspT104I TTCGAA 1 cut(s) 558
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 3 cut(s) 273, 489, 587
BssMI GATC 4 cut(s) 16, 708, 769, 817
BssT1I CCWWGG 2 cut(s) 489, 587
Bst4CI ACNGT 3 cut(s) 83, 329, 421
Bst6I CTCTTC 3 cut(s) 489, 683, 837
BstBI TTCGAA 1 cut(s) 558
BstDEI CTNAG 5 cut(s) 161, 216, 365, 639, 780
BstDSI CCRYGG 2 cut(s) 489, 587
BstENI CCTNNNNNAGG 1 cut(s) 93
BstF5I GGATG 3 cut(s) 10, 283, 859
BstKTI GATC 4 cut(s) 19, 711, 772, 820
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 4 cut(s) 16, 708, 769, 817
BstMWI GCNNNNNNNGC 1 cut(s) 664
BstSCI CCNGG 2 cut(s) 272, 273
BstSFI CTRYAG 3 cut(s) 79, 462, 597
BstV1I GCAGC 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 422
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 5 cut(s) 243, 403, 513, 592, 825
BtgI CCRYGG 2 cut(s) 489, 587
BtsCI GGATG 3 cut(s) 10, 283, 859
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 169, 573
Cfr13I GGNCC 1 cut(s) 824
Cfr9I CCCGGG 1 cut(s) 273
Csp6I GTAC 1 cut(s) 376
CviAII CATG 3 cut(s) 490, 546, 588
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 5 cut(s) 161, 216, 365, 639, 780
DpnI GATC 4 cut(s) 18, 710, 771, 819
DpnII GATC 4 cut(s) 16, 708, 769, 817
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 3 cut(s) 489, 683, 837
EarI CTCTTC 3 cut(s) 489, 683, 837
Eco130I CCWWGG 2 cut(s) 489, 587
Eco147I AGGCCT 1 cut(s) 513
Eco32I GATATC 1 cut(s) 794
Eco57I CTGAAG 1 cut(s) 861
Eco88I CYCGRG 1 cut(s) 273
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 824
EcoRI GAATTC 1 cut(s) 806
EcoRV GATATC 1 cut(s) 794
EcoT14I CCWWGG 2 cut(s) 489, 587
ErhI CCWWGG 2 cut(s) 489, 587
FaeI CATG 3 cut(s) 493, 549, 591
FaiI YATR 8 cut(s) 38, 429, 464, 491, 547, 589, 663, 812
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 3 cut(s) 489, 545, 587
Fnu4HI GCNGC 2 cut(s) 201, 204
FokI GGATG 2 cut(s) 17, 290
Fsp4HI GCNGC 2 cut(s) 201, 204
FspBI CTAG 3 cut(s) 62, 101, 509
GluI GCNGC 2 cut(s) 201, 204
HaeIII GGCC 5 cut(s) 243, 403, 513, 592, 825
HapII CCGG 2 cut(s) 47, 274
Hin1II CATG 3 cut(s) 493, 549, 591
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 3 cut(s) 361, 394, 531
HpaI GTTAAC 1 cut(s) 442
HpaII CCGG 2 cut(s) 47, 274
HphI GGTGA 5 cut(s) 242, 317, 508, 685, 697
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 7 cut(s) 133, 348, 366, 393, 504, 733, 783
Hpy188III TCNNGA 4 cut(s) 47, 358, 749, 839
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 3 cut(s) 83, 329, 421
HpyCH4V TGCA 8 cut(s) 94, 167, 317, 537, 549, 599, 614, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 664
HpyF3I CTNAG 5 cut(s) 161, 216, 365, 639, 780
Hsp92II CATG 3 cut(s) 493, 549, 591
Kpn2I TCCGGA 1 cut(s) 46
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 4 cut(s) 16, 708, 769, 817
LguI GCTCTTC 1 cut(s) 683
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 2 cut(s) 304, 607
MaeI CTAG 3 cut(s) 62, 101, 509
MaeIII GTNAC 3 cut(s) 51, 179, 289
MalI GATC 4 cut(s) 18, 710, 771, 819
MboI GATC 4 cut(s) 16, 708, 769, 817
MboII GAAGA 5 cut(s) 427, 449, 506, 700, 854
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 3 cut(s) 538, 609, 806
MlyI GAGTC 1 cut(s) 540
MmeI TCCRAC 1 cut(s) 738
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 3 cut(s) 156, 564, 692
MseI TTAA 4 cut(s) 381, 441, 471, 865
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 2 cut(s) 47, 274
MspR9I CCNGG 2 cut(s) 274, 275
Mva1269I GAATGC 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 664
NciI CCSGG 2 cut(s) 274, 275
NcoI CCATGG 2 cut(s) 489, 587
NdeII GATC 4 cut(s) 16, 708, 769, 817
NlaIII CATG 3 cut(s) 493, 549, 591
NspV TTCGAA 1 cut(s) 558
PceI AGGCCT 1 cut(s) 513
PciSI GCTCTTC 1 cut(s) 683
PctI GAATGC 1 cut(s) 42
PdmI GAANNNNTTC 3 cut(s) 156, 564, 692
PfeI GAWTC 2 cut(s) 361, 394
PflMI CCANNNNNTGG 1 cut(s) 303
PkrI GCNGC 2 cut(s) 202, 205
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
PspPI GGNCC 1 cut(s) 824
PstI CTGCAG 1 cut(s) 601
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SapI GCTCTTC 1 cut(s) 683
SaqAI TTAA 4 cut(s) 381, 441, 471, 865
SatI GCNGC 2 cut(s) 201, 204
Sau3AI GATC 4 cut(s) 16, 708, 769, 817
Sau96I GGNCC 1 cut(s) 824
SchI GAGTC 1 cut(s) 540
ScrFI CCNGG 2 cut(s) 274, 275
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 2 cut(s) 304, 607
SfcI CTRYAG 3 cut(s) 79, 462, 597
SfuI TTCGAA 1 cut(s) 558
SmaI CCCGGG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 356, 749
SmoI CTYRAG 2 cut(s) 356, 749
Sse9I AATT 3 cut(s) 538, 609, 806
SseBI AGGCCT 1 cut(s) 513
SsiI CCGC 1 cut(s) 203
SspMI CTAG 3 cut(s) 62, 101, 509
StuI AGGCCT 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 272, 273
StyI CCWWGG 2 cut(s) 489, 587
TaaI ACNGT 3 cut(s) 83, 329, 421
TaqI TCGA 1 cut(s) 558
TasI AATT 3 cut(s) 538, 609, 806
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 2 cut(s) 361, 394
Tru1I TTAA 4 cut(s) 381, 441, 471, 865
Tru9I TTAA 4 cut(s) 381, 441, 471, 865
TscAI CASTG 2 cut(s) 169, 580
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 5 cut(s) 253, 294, 386, 534, 799
TspMI CCCGGG 1 cut(s) 273
TspRI CASTG 2 cut(s) 169, 580
Van91I CCANNNNNTGG 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 93
XapI RAATTY 1 cut(s) 806
XmaI CCCGGG 1 cut(s) 273
XmnI GAANNNNTTC 3 cut(s) 156, 564, 692
XspI CTAG 3 cut(s) 62, 101, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.