Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Reverse (-)

15357989 .. 15362501

Gene Structure 4513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00012480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGTGATATATTTAAGTGGGAGCTTAATTTGTCCAGAGGAGGTGGAGAAGATCAATCAAATTCCACAGAAAAGAGGATTTCCTGCATTCGACTTCGTTGCGGATCATGGCCCTTACAAGACTTTGAGGAACTGTGGGAGGGAGAGATTTAACAATCACAATTCACAGTTTGTGCGAGATGGACATATGAGCAAGGGCCAAGGGTTGAGTGTTGTGGTGAAGAGCTTTAACAAGGGGAGGATTAAGGAAAATATGGACATATTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

89

Amino Acids

10.2

Weight (kDa)

9.06

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	2 cut(s)	24, 225
AluI	AGCT	2 cut(s)	24, 225
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	2 cut(s)	109, 196
ApoI	RAATTY	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	110, 196
AsuHPI	GGTGA	2 cut(s)	16, 229
BccI	CCATC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BmgT120I	GGNCC	2 cut(s)	110, 196
BsaJI	CCNNGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	111, 198
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	111, 198
Bsp143I	GATC	2 cut(s)	51, 103
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	2 cut(s)	111, 198
BspPI	GGATC	1 cut(s)	111
BspQI	GCTCTTC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	2 cut(s)	51, 103
BssT1I	CCWWGG	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	134, 168
Bst6I	CTCTTC	1 cut(s)	215
BstKTI	GATC	2 cut(s)	54, 106
BstMBI	GATC	2 cut(s)	51, 103
BsuRI	GGCC	2 cut(s)	111, 198
Cfr13I	GGNCC	2 cut(s)	110, 196
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	4 cut(s)	24, 111, 198, 225
CviKI_1	RGCY	4 cut(s)	24, 111, 198, 225
DpnI	GATC	2 cut(s)	53, 105
DpnII	GATC	2 cut(s)	51, 103
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	110
FaiI	YATR	6 cut(s)	10, 108, 186, 188, 254, 260
FatI	CATG	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	111, 198
Hin1II	CATG	1 cut(s)	110
HphI	GGTGA	2 cut(s)	16, 229
Hpy188III	TCNNGA	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	134, 168
HpyCH4V	TGCA	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	51, 103
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	2 cut(s)	48, 96
MalI	GATC	2 cut(s)	53, 105
MboI	GATC	2 cut(s)	51, 103
MboII	GAAGA	2 cut(s)	61, 232
MluCI	AATT	3 cut(s)	27, 60, 160
MnlI	CCTC	6 cut(s)	31, 34, 68, 120, 132, 231
MseI	TTAA	5 cut(s)	14, 26, 150, 228, 243
Mva1269I	GAATGC	1 cut(s)	86
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	2 cut(s)	51, 103
NlaIII	CATG	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	215
PctI	GAATGC	1 cut(s)	86
PspPI	GGNCC	2 cut(s)	110, 196
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	5 cut(s)	14, 26, 150, 228, 243
Sau3AI	GATC	2 cut(s)	51, 103
Sau96I	GGNCC	2 cut(s)	110, 196
SetI	ASST	3 cut(s)	26, 45, 227
SgeI	CNNG	8 cut(s)	47, 95, 119, 130, 188, 205, 212, 244
Sse9I	AATT	3 cut(s)	27, 60, 160
SsiI	CCGC	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	2 cut(s)	134, 168
TaqI	TCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	27, 60, 160
Tru1I	TTAA	5 cut(s)	14, 26, 150, 228, 243
Tru9I	TTAA	5 cut(s)	14, 26, 150, 228, 243
XapI	RAATTY	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.