Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

63482841 .. 63483342

Gene Structure 502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG430300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAAAGCATAAGCATTCCGAAGTTGCCACTGCTAGCCTCCCCAAGTAGTTACAGTATTCCGGTGCAAGGTCTAGGAACGGCTGTATATCCTTTTCCTGCCTCTGAACAAAGTAGAGAAAAAGAAGCCATTCTCAGTGCAATCAAAATTGGTTACAGACATTTTGATACGGCAGCGGCTTACCAGACTGAGCAAGTTCTTGGTGAAGCTATCGGCGAAGCTATTTCTCTTGGCCTCATCAAATCCCGGGATGAACTTTTTGTTACTTCCAAGCTTTGGTGCTGTGATGCACACCCTCACCGTGTCCCCCCTGCCATTCAGAACACCCTCAAGAATCTGAGATTGGAGTACCTTAACCTTTATCTGATTCATTGGCCTGTGAGTTTGAAGACGTACAGGAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

135

Amino Acids

15.09

Weight (kDa)

8.55

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	34 - 128	1.1e-17	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AciI	CCGC	1 cut(s)	176
AfaI	GTAC	2 cut(s)	350, 395
AfiI	CCNNNNNNNGG	2 cut(s)	68, 276
AgsI	TTSAA	1 cut(s)	388
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	4 cut(s)	209, 221, 274, 403
AluI	AGCT	4 cut(s)	209, 221, 274, 403
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	2 cut(s)	232, 374
ApeKI	GCWGC	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	129
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	2 cut(s)	215, 290
AsuNHI	GCTAGC	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	96, 186
BcnI	CCSGG	2 cut(s)	247, 248
BfaI	CTAG	2 cut(s)	35, 74
BisI	GCNGC	2 cut(s)	174, 177
BlsI	GCNGC	2 cut(s)	175, 178
Bme1390I	CCNGG	2 cut(s)	247, 248
BmeT110I	CYCGRG	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	247, 248
BmsI	GCATC	1 cut(s)	277
BmtI	GCTAGC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	247, 248
BsaJI	CCNNGG	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 276
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	68, 276
BseMII	CTCAG	3 cut(s)	148, 180, 329
BseXI	GCAGC	1 cut(s)	185
BshFI	GGCC	2 cut(s)	234, 376
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	62, 247
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	68, 276
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	234, 376
BsoBI	CYCGRG	1 cut(s)	246
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	2 cut(s)	234, 376
BspCNI	CTCAG	3 cut(s)	147, 181, 330
BspOI	GCTAGC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	56, 302
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	3 cut(s)	134, 189, 338
BstF5I	GGATG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	245, 246
BstV1I	GCAGC	1 cut(s)	185
BstV2I	GAAGAC	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	234, 376
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 142
Cac8I	GCNNGC	1 cut(s)	36
Cfr9I	CCCGGG	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	349, 394
CviQI	GTAC	2 cut(s)	349, 394
DdeI	CTNAG	3 cut(s)	134, 189, 338
Eco88I	CYCGRG	1 cut(s)	246
FaiI	YATR	3 cut(s)	11, 88, 406
FaqI	GGGAC	1 cut(s)	290
Fnu4HI	GCNGC	2 cut(s)	174, 177
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	174, 177
FspBI	CTAG	2 cut(s)	35, 74
GluI	GCNGC	2 cut(s)	174, 177
HaeIII	GGCC	2 cut(s)	234, 376
HapII	CCGG	2 cut(s)	62, 247
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	334, 367
HpaII	CCGG	2 cut(s)	62, 247
HphI	GGTGA	2 cut(s)	215, 290
Hpy188I	TCNGA	5 cut(s)	21, 106, 321, 339, 366
Hpy188III	TCNNGA	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	56, 302
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	3 cut(s)	67, 140, 290
HpyF3I	CTNAG	3 cut(s)	134, 189, 338
HpySE526I	ACGT	1 cut(s)	392
LpnPI	CCDG	7 cut(s)	75, 111, 197, 260, 324, 382, 390
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	2 cut(s)	35, 74
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	3 cut(s)	50, 152, 262
MboII	GAAGA	1 cut(s)	400
MluCI	AATT	1 cut(s)	147
MnlI	CCTC	5 cut(s)	49, 112, 245, 306, 338
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	2 cut(s)	62, 247
MspR9I	CCNGG	2 cut(s)	247, 248
Mva1269I	GAATGC	1 cut(s)	15
NciI	CCSGG	2 cut(s)	247, 248
NheI	GCTAGC	1 cut(s)	34
PctI	GAATGC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	334, 367
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	175, 178
RsaI	GTAC	2 cut(s)	350, 395
RsaNI	GTAC	2 cut(s)	349, 394
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	2 cut(s)	174, 177
ScrFI	CCNGG	2 cut(s)	247, 248
SetI	ASST	8 cut(s)	73, 211, 223, 276, 354, 360, 395, 405
SfaNI	GCATC	1 cut(s)	277
SmaI	CCCGGG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	2 cut(s)	35, 74
StyD4I	CCNGG	2 cut(s)	245, 246
TaaI	ACNGT	2 cut(s)	56, 302
TaiI	ACGT	1 cut(s)	395
TasI	AATT	1 cut(s)	147
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	334, 367
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	2 cut(s)	36, 142
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	267, 359
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	2 cut(s)	36, 142
Van91I	CCANNNNNTGG	1 cut(s)	276
XmaI	CCCGGG	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	2 cut(s)	35, 74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.