RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 274 |
| AfaI | GTAC | 1 cut(s) | 101 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 195, 225 |
| AgsI | TTSAA | 1 cut(s) | 398 |
| AjnI | CCWGG | 3 cut(s) | 194, 218, 247 |
| AluBI | AGCT | 1 cut(s) | 301 |
| AluI | AGCT | 1 cut(s) | 301 |
| Alw26I | GTCTC | 1 cut(s) | 78 |
| AspS9I | GGNCC | 2 cut(s) | 186, 216 |
| AsuHPI | GGTGA | 2 cut(s) | 46, 270 |
| AvaII | GGWCC | 2 cut(s) | 186, 216 |
| BaeGI | GKGCMC | 1 cut(s) | 349 |
| BccI | CCATC | 3 cut(s) | 88, 163, 241 |
| BciT130I | CCWGG | 3 cut(s) | 196, 220, 249 |
| BcoDI | GTCTC | 1 cut(s) | 78 |
| Bme1390I | CCNGG | 3 cut(s) | 196, 220, 249 |
| Bme18I | GGWCC | 2 cut(s) | 186, 216 |
| BmgT120I | GGNCC | 2 cut(s) | 186, 216 |
| BmiI | GGNNCC | 1 cut(s) | 188 |
| BmrFI | CCNGG | 3 cut(s) | 196, 220, 249 |
| BmsI | GCATC | 1 cut(s) | 326 |
| BpmI | CTGGAG | 1 cut(s) | 88 |
| BpuEI | CTTGAG | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 2 cut(s) | 167, 281 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 195, 225 |
| Bse1I | ACTGG | 1 cut(s) | 274 |
| BseBI | CCWGG | 3 cut(s) | 196, 220, 249 |
| BseDI | CCNNGG | 2 cut(s) | 167, 281 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 195, 225 |
| BseNI | ACTGG | 1 cut(s) | 274 |
| BseRI | GAGGAG | 1 cut(s) | 241 |
| BseSI | GKGCMC | 1 cut(s) | 349 |
| BslFI | GGGAC | 1 cut(s) | 172 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 195, 225 |
| BsmAI | GTCTC | 1 cut(s) | 78 |
| BsmBI | CGTCTC | 1 cut(s) | 78 |
| BsmFI | GGGAC | 1 cut(s) | 172 |
| Bsp1286I | GDGCHC | 1 cut(s) | 349 |
| Bsp143I | GATC | 1 cut(s) | 40 |
| BspLI | GGNNCC | 1 cut(s) | 188 |
| BsrI | ACTGG | 1 cut(s) | 274 |
| BssECI | CCNNGG | 2 cut(s) | 167, 281 |
| BssMI | GATC | 1 cut(s) | 40 |
| BssT1I | CCWWGG | 1 cut(s) | 167 |
| Bst2UI | CCWGG | 3 cut(s) | 196, 220, 249 |
| Bst4CI | ACNGT | 1 cut(s) | 111 |
| Bst6I | CTCTTC | 1 cut(s) | 11 |
| BstDEI | CTNAG | 1 cut(s) | 403 |
| BstKTI | GATC | 1 cut(s) | 43 |
| BstMAI | GTCTC | 1 cut(s) | 78 |
| BstMBI | GATC | 1 cut(s) | 40 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 307 |
| BstNI | CCWGG | 3 cut(s) | 196, 220, 249 |
| BstSCI | CCNGG | 3 cut(s) | 194, 218, 247 |
| BstSLI | GKGCMC | 1 cut(s) | 349 |
| Cfr13I | GGNCC | 2 cut(s) | 186, 216 |
| Csp6I | GTAC | 1 cut(s) | 100 |
| CviJI | RGCY | 1 cut(s) | 301 |
| CviKI_1 | RGCY | 1 cut(s) | 301 |
| CviQI | GTAC | 1 cut(s) | 100 |
| DdeI | CTNAG | 1 cut(s) | 403 |
| DpnI | GATC | 1 cut(s) | 42 |
| DpnII | GATC | 1 cut(s) | 40 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 274 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 274 |
| Eam1104I | CTCTTC | 1 cut(s) | 11 |
| EarI | CTCTTC | 1 cut(s) | 11 |
| Eco130I | CCWWGG | 1 cut(s) | 167 |
| Eco47I | GGWCC | 2 cut(s) | 186, 216 |
| EcoO109I | RGGNCCY | 1 cut(s) | 186 |
| EcoRII | CCWGG | 3 cut(s) | 194, 218, 247 |
| EcoT14I | CCWWGG | 1 cut(s) | 167 |
| ErhI | CCWWGG | 1 cut(s) | 167 |
| Esp3I | CGTCTC | 1 cut(s) | 78 |
| FaiI | YATR | 4 cut(s) | 90, 264, 334, 378 |
| FaqI | GGGAC | 1 cut(s) | 172 |
| GsuI | CTGGAG | 1 cut(s) | 88 |
| HinfI | GANTC | 3 cut(s) | 48, 229, 244 |
| HphI | GGTGA | 2 cut(s) | 46, 270 |
| Hpy188I | TCNGA | 3 cut(s) | 285, 322, 342 |
| Hpy188III | TCNNGA | 1 cut(s) | 105 |
| HpyAV | CCTTC | 2 cut(s) | 141, 171 |
| HpyCH4III | ACNGT | 1 cut(s) | 111 |
| HpyCH4V | TGCA | 1 cut(s) | 317 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 307 |
| HpyF3I | CTNAG | 1 cut(s) | 403 |
| Kzo9I | GATC | 1 cut(s) | 40 |
| LweI | GCATC | 1 cut(s) | 326 |
| MaeIII | GTNAC | 2 cut(s) | 265, 276 |
| MalI | GATC | 1 cut(s) | 42 |
| MboI | GATC | 1 cut(s) | 40 |
| MboII | GAAGA | 4 cut(s) | 28, 350, 362, 365 |
| MhlI | GDGCHC | 1 cut(s) | 349 |
| MluCI | AATT | 1 cut(s) | 256 |
| MlyI | GAGTC | 1 cut(s) | 238 |
| MnlI | CCTC | 6 cut(s) | 24, 136, 201, 219, 291, 316 |
| MspR9I | CCNGG | 3 cut(s) | 196, 220, 249 |
| MvaI | CCWGG | 3 cut(s) | 196, 220, 249 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 307 |
| NdeII | GATC | 1 cut(s) | 40 |
| NlaIV | GGNNCC | 1 cut(s) | 188 |
| NmuCI | GTSAC | 2 cut(s) | 265, 276 |
| PfeI | GAWTC | 2 cut(s) | 48, 244 |
| PleI | GAGTC | 1 cut(s) | 237 |
| PpsI | GAGTC | 1 cut(s) | 237 |
| PpuMI | RGGWCCY | 1 cut(s) | 186 |
| Psp5II | RGGWCCY | 1 cut(s) | 186 |
| Psp6I | CCWGG | 3 cut(s) | 194, 218, 247 |
| PspGI | CCWGG | 3 cut(s) | 194, 218, 247 |
| PspN4I | GGNNCC | 1 cut(s) | 188 |
| PspPI | GGNCC | 2 cut(s) | 186, 216 |
| PspPPI | RGGWCCY | 1 cut(s) | 186 |
| RsaI | GTAC | 1 cut(s) | 101 |
| RsaNI | GTAC | 1 cut(s) | 100 |
| Sau3AI | GATC | 1 cut(s) | 40 |
| Sau96I | GGNCC | 2 cut(s) | 186, 216 |
| SchI | GAGTC | 1 cut(s) | 238 |
| ScrFI | CCNGG | 3 cut(s) | 196, 220, 249 |
| SduI | GDGCHC | 1 cut(s) | 349 |
| SetI | ASST | 8 cut(s) | 152, 188, 200, 212, 218, 224, 283, 303 |
| SfaNI | GCATC | 1 cut(s) | 326 |
| SinI | GGWCC | 2 cut(s) | 186, 216 |
| SmlI | CTYRAG | 1 cut(s) | 302 |
| SmoI | CTYRAG | 1 cut(s) | 302 |
| Sse9I | AATT | 1 cut(s) | 256 |
| StyD4I | CCNGG | 3 cut(s) | 194, 218, 247 |
| StyI | CCWWGG | 1 cut(s) | 167 |
| TaaI | ACNGT | 1 cut(s) | 111 |
| TaqI | TCGA | 3 cut(s) | 8, 206, 224 |
| TasI | AATT | 1 cut(s) | 256 |
| TfiI | GAWTC | 2 cut(s) | 48, 244 |
| TseFI | GTSAC | 2 cut(s) | 265, 276 |
| Tsp45I | GTSAC | 2 cut(s) | 265, 276 |
| TspDTI | ATGAA | 4 cut(s) | 40, 77, 350, 365 |
| VpaK11BI | GGWCC | 2 cut(s) | 186, 216 |