MD04G1063200.v1.1

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000205
Physical Location & Seq
Forward (+)
8364419 .. 8364754
336 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1063200.v1.1.491

Sequence Viewer

Length: 336 bp
ATGGCAACAGCAACCCAAATCCAGGAAGTGGTGCTTGACTCCTCCGCCGGCCCCAAGAGCATGCCCGTGCTCACCTTCGGCACGGCATACGACAACAAACAGCCTAACACGTTGAAAATGGCAGTGGTTGAGGCCATCAAGCTCAGCTACAGGCATTTTGATACGGCTTCGATATATAGCTCCGAGCAGACTCTGGGCGAAGCCATTAAGGAAGCTCTCGAACTTGGCCTTGTTGATTCCAAAGACCAGCTCTTCATCATTTCAAAGCTATGGTGCAATGATGCTCACCCTGATGCGTCTTTGATGCTGGGTTTATTGCCTCACTTCCCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

112

Amino Acids

12.18

Weight (kDa)

5.19

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 25 - 96 1.9e-10 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 28
AciI CCGC 1 cut(s) 45
AfiI CCNNNNNNNGG 2 cut(s) 22, 28
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 2 cut(s) 115, 264
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 6 cut(s) 142, 147, 180, 215, 250, 268
AluI AGCT 6 cut(s) 142, 147, 180, 215, 250, 268
Alw21I GWGCWC 1 cut(s) 72
AlwNI CAGNNNCTG 1 cut(s) 193
AoxI GGCC 3 cut(s) 49, 132, 226
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 64, 278
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 1 cut(s) 143
BceAI ACGGC 2 cut(s) 99, 180
BciT130I CCWGG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 148
BlpI GCTNAGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 3 cut(s) 271, 283, 294
Bpu1102I GCTNAGC 1 cut(s) 143
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 28
Bse118I RCCGGY 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 22, 28
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 31
BseYI CCCAGC 1 cut(s) 307
BshFI GGCC 3 cut(s) 51, 134, 228
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 22, 28
BsnI GGCC 3 cut(s) 51, 134, 228
Bsp1286I GDGCHC 1 cut(s) 72
Bsp1720I GCTNAGC 1 cut(s) 143
BspACI CCGC 1 cut(s) 45
BspANI GGCC 3 cut(s) 51, 134, 228
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 49, 62
BstDEI CTNAG 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 148
BsuRI GGCC 3 cut(s) 51, 134, 228
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 49, 62
CaiI CAGNNNCTG 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 50
CseI GACGC 1 cut(s) 285
CviAII CATG 1 cut(s) 61
DdeI CTNAG 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
EciI GGCGGA 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 64
FaiI YATR 5 cut(s) 62, 88, 175, 177, 271
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 311
HaeIII GGCC 3 cut(s) 51, 134, 228
HapII CCGG 1 cut(s) 48
HgaI GACGC 1 cut(s) 285
Hin1II CATG 1 cut(s) 64
HinfI GANTC 3 cut(s) 38, 190, 236
HpaII CCGG 1 cut(s) 48
HphI GGTGA 2 cut(s) 64, 278
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 1 cut(s) 64
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
LguI GCTCTTC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 8 cut(s) 8, 35, 61, 136, 179, 260, 293, 303
LweI GCATC 3 cut(s) 271, 283, 294
MaeII ACGT 1 cut(s) 110
MboII GAAGA 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 72
MlyI GAGTC 2 cut(s) 32, 184
MnlI CCTC 3 cut(s) 52, 124, 330
MroNI GCCGGC 1 cut(s) 47
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 2 cut(s) 65, 291
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 57
NaeI GCCGGC 1 cut(s) 49
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 52
NspI RCATGY 1 cut(s) 64
PaeI GCATGC 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 257
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 236
PflMI CCANNNNNTGG 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 21
PleI GAGTC 2 cut(s) 32, 184
PpsI GAGTC 2 cut(s) 32, 184
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 193
RseI CAYNNNNRTG 2 cut(s) 65, 291
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 2 cut(s) 32, 184
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 72
SetI ASST 8 cut(s) 77, 113, 144, 149, 182, 217, 252, 270
SfaNI GCATC 3 cut(s) 271, 283, 294
SfcI CTRYAG 1 cut(s) 148
SmiMI CAYNNNNRTG 2 cut(s) 65, 291
SphI GCATGC 1 cut(s) 64
SsiI CCGC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 21
TaiI ACGT 1 cut(s) 113
TaqI TCGA 2 cut(s) 170, 219
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 244
TspRI CASTG 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 28
XceI RCATGY 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.