Rh4CG449300

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
68344489 .. 68344941
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG449300.1

Sequence Viewer

Length: 321 bp
ATGGCCTACTCTCCTTTCGGAGCAAAAGGAACACGTTGGGGCTCAAATGGAATCATGGAATCTGAGACGCTCAAGCAGATTGCAGATGCAAAAAGGAAAACCCTTGCCCAGGTTTGTCTGAGGTGGGCATACGAGCAAGAGGTGAGTTTCGTGGTGAAAAGCTTCAGTAAGGAGAGGATTAGTGAAAATAGTGATATATTTGAGTGGGAGCTTTGTCCAGATGAGGTGGAGAAGATCAATCAAATTCCACAGAAAAGAGGATTTCCTGCATTCGACTTCGTTGCGGATCATGGCCTTTACAAGACTCTTGAGGAGTTGTGA

Protein Analysis

106

Amino Acids

12.21

Weight (kDa)

5.2

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 21 - 82 3.2e-08 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 284
AclWI GGATC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 32
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 2 cut(s) 162, 211
AluI AGCT 2 cut(s) 162, 211
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 294
AoxI GGCC 2 cut(s) 3, 292
ApoI RAATTY 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 154, 166
BanII GRGCYC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 54, 110
BshFI GGCC 2 cut(s) 5, 294
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 2 cut(s) 5, 294
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 234, 286
BspACI CCGC 1 cut(s) 284
BspANI GGCC 2 cut(s) 5, 294
BspCNI CTCAG 2 cut(s) 55, 111
BspPI GGATC 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 234, 286
Bst2UI CCWGG 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 63, 119
BstENI CCTNNNNNAGG 1 cut(s) 107
BstKTI GATC 2 cut(s) 237, 289
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 234, 286
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BsuRI GGCC 2 cut(s) 5, 294
CseI GACGC 1 cut(s) 76
CviAII CATG 2 cut(s) 55, 290
CviJI RGCY 5 cut(s) 5, 42, 162, 211, 294
CviKI_1 RGCY 5 cut(s) 5, 42, 162, 211, 294
DdeI CTNAG 2 cut(s) 63, 119
DpnI GATC 2 cut(s) 236, 288
DpnII GATC 2 cut(s) 234, 286
Eco24I GRGCYC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 44
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 2 cut(s) 58, 293
FaiI YATR 4 cut(s) 56, 130, 197, 291
FatI CATG 2 cut(s) 54, 289
FriOI GRGCYC 1 cut(s) 44
HaeIII GGCC 2 cut(s) 5, 294
HgaI GACGC 1 cut(s) 76
Hin1II CATG 2 cut(s) 58, 293
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 3 cut(s) 51, 59, 304
HphI GGTGA 2 cut(s) 154, 166
Hpy188I TCNGA 3 cut(s) 20, 64, 120
Hpy188III TCNNGA 2 cut(s) 218, 308
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 3 cut(s) 83, 89, 269
HpyF3I CTNAG 2 cut(s) 63, 119
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 2 cut(s) 58, 293
Kzo9I GATC 2 cut(s) 234, 286
LmnI GCTCC 2 cut(s) 20, 208
LpnPI CCDG 4 cut(s) 95, 122, 231, 279
LweI GCATC 1 cut(s) 76
MaeII ACGT 1 cut(s) 34
MalI GATC 2 cut(s) 236, 288
MboI GATC 2 cut(s) 234, 286
MboII GAAGA 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 1 cut(s) 243
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 6 cut(s) 114, 133, 168, 217, 251, 304
MroXI GAANNNNTTC 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 1 cut(s) 110
NdeII GATC 2 cut(s) 234, 286
NlaIII CATG 2 cut(s) 58, 293
PctI GAATGC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 51, 59
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
Sau3AI GATC 2 cut(s) 234, 286
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 44
SetI ASST 7 cut(s) 37, 114, 125, 144, 164, 213, 228
SfaNI GCATC 1 cut(s) 76
SmlI CTYRAG 2 cut(s) 71, 308
SmoI CTYRAG 2 cut(s) 71, 308
Sse9I AATT 1 cut(s) 243
SsiI CCGC 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 108
TaiI ACGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 273
TasI AATT 1 cut(s) 243
TfiI GAWTC 2 cut(s) 51, 59
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.