Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

63063004 .. 63069021

Gene Structure 6018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAGAACATAAGCAATATTCCAGAGTTGGCGCTAACCATCGTCCCAAGTAGTATTGCAAGTGATAAAAGCAGTATTCCGGTGCTAGGTTTAGGAACAGCTGCATATCCTTTTGTTGCCTCTGAAGCAGAGAAAGAAGCCATTCTCACTGCAATCCAAGTCGGCCACAGACATTTTGATACCGCAGCTGTTTACCAGACGGAGCAAGTTCTTGGTGAAGCCATTGCCGAAGCTCTTTCACTTGAGCTCCTTTGGTGCACGGATGCACACCATCACCTTGTCCTGCCTGCCATTCATAAAACACTCAAGTGCGATTTGGAATACCTAGATTTGTATCTCATTCATTGGCCTGTGAGTTTTGAGCCGGGAAGCTATGACATGGCTGTTAAGAAAGAGGATCTTGTTCCTATGGACTTCAAGTCTGTGTGGGAAGCAATGGAAGAGTGCCAGAAGCTAGGCCTCACCAAGGCAATAGGAGTCAGCAATTTCTCATGCAAAAAGATTGAAATCTTGCTTTCCACTGCAATAATCCCTCCTGCACAGAAAAAGCTGAAAGAGTTTTGTGAAAGAAAAGGTATAATCATCACTGCCTACTCTCCGTTGGGGGCAAAAGCGACACCGTGGGGAACAAATGGAGTTATGGAATGTGAGACTCTCAAACAAATTGCTGAAACAAAAAGGAAAACTCTTGCTCAGGTTAAGAGAGGATTAAGGAAAATATATATGGACATATTTGAATGGGAGCTGCAGCCTGAGGAAGTTGACAAGATCAATCAAATTCCACAAAAGAGAGGATGCCAAGCCTCCGACTTCGCTTCAGATAATGGCCCTTTCAAGTCTCTTGAAGAGTTTTGGGATGGAGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

289

Amino Acids

32.24

Weight (kDa)

5.21

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	29 - 204	9.5e-24	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	777
AcuI	CTGAAG	2 cut(s)	144, 801
AfiI	CCNNNNNNNGG	2 cut(s)	86, 466
AgsI	TTSAA	5 cut(s)	418, 506, 737, 835, 845
AhdI	GACNNNNNGTC	1 cut(s)	418
AleI	CACNNNNGTG	1 cut(s)	307
AluBI	AGCT	8 cut(s)	101, 188, 233, 247, 372, 454, 550, 745
AluI	AGCT	8 cut(s)	101, 188, 233, 247, 372, 454, 550, 745
Alw21I	GWGCWC	2 cut(s)	249, 260
Alw26I	GTCTC	2 cut(s)	644, 843
Alw44I	GTGCAC	1 cut(s)	256
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	4 cut(s)	163, 347, 457, 826
ApaLI	GTGCAC	1 cut(s)	256
ApeKI	GCWGC	4 cut(s)	101, 185, 745, 748
ApoI	RAATTY	1 cut(s)	777
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	827
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	3 cut(s)	227, 266, 454
AxyI	CCTNAGG	1 cut(s)	753
BaeGI	GKGCMC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	249, 260
BbvI	GCAGC	4 cut(s)	88, 197, 732, 760
BccI	CCATC	3 cut(s)	47, 279, 851
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	644, 843
BfaI	CTAG	3 cut(s)	86, 326, 455
BfmI	CTRYAG	1 cut(s)	746
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	4 cut(s)	102, 186, 746, 749
BlsI	GCNGC	4 cut(s)	103, 187, 747, 750
Bme1390I	CCNGG	1 cut(s)	366
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	827
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	253, 785
Bpu10I	CCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	2 cut(s)	263, 290
BpuMI	CCSGG	1 cut(s)	366
BsaBI	GATNNNNATC	2 cut(s)	333, 506
BsaJI	CCNNGG	2 cut(s)	465, 620
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 466
Bse21I	CCTNAGG	1 cut(s)	753
Bse3DI	GCAATG	2 cut(s)	222, 441
Bse8I	GATNNNNATC	2 cut(s)	333, 506
BseDI	CCNNGG	2 cut(s)	465, 620
BseGI	GGATG	3 cut(s)	268, 800, 862
BseJI	GATNNNNATC	2 cut(s)	333, 506
BseLI	CCNNNNNNNGG	2 cut(s)	86, 466
BseMI	GCAATG	2 cut(s)	222, 441
BseMII	CTCAG	2 cut(s)	707, 744
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	4 cut(s)	88, 197, 732, 760
BsgI	GTGCAG	1 cut(s)	522
BshFI	GGCC	4 cut(s)	165, 349, 459, 828
BsiHKAI	GWGCWC	2 cut(s)	249, 260
BsiSI	CCGG	2 cut(s)	80, 365
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	86, 466
BsmAI	GTCTC	2 cut(s)	644, 843
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	4 cut(s)	165, 349, 459, 828
Bsp1286I	GDGCHC	2 cut(s)	249, 260
Bsp143I	GATC	2 cut(s)	397, 768
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	4 cut(s)	165, 349, 459, 828
BspCNI	CTCAG	2 cut(s)	706, 745
BspMAI	CTGCAG	1 cut(s)	750
BspPI	GGATC	1 cut(s)	405
BsrDI	GCAATG	2 cut(s)	222, 441
BssECI	CCNNGG	2 cut(s)	465, 620
BssMI	GATC	2 cut(s)	397, 768
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	621
Bst6I	CTCTTC	2 cut(s)	435, 840
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	693, 753
BstDSI	CCRYGG	1 cut(s)	620
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	3 cut(s)	268, 800, 862
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	400, 771
BstMAI	GTCTC	2 cut(s)	644, 843
BstMBI	GATC	2 cut(s)	397, 768
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	746
BstSLI	GKGCMC	1 cut(s)	260
BstV1I	GCAGC	4 cut(s)	88, 197, 732, 760
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu36I	CCTNAGG	1 cut(s)	753
BsuRI	GGCC	4 cut(s)	165, 349, 459, 828
BtgI	CCRYGG	1 cut(s)	620
BtsCI	GGATG	3 cut(s)	268, 800, 862
BtsI	GCAGTG	3 cut(s)	147, 519, 585
BtsIMutI	CAGTG	3 cut(s)	147, 519, 585
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	827
CviAII	CATG	2 cut(s)	379, 492
DdeI	CTNAG	2 cut(s)	693, 753
DpnI	GATC	2 cut(s)	399, 770
DpnII	GATC	2 cut(s)	397, 768
DriI	GACNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	435, 840
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EarI	CTCTTC	2 cut(s)	435, 840
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	144, 801
Eco81I	CCTNAGG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	247
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	2 cut(s)	382, 495
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	2 cut(s)	378, 491
Fnu4HI	GCNGC	4 cut(s)	102, 186, 746, 749
FokI	GGATG	2 cut(s)	275, 807
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	102, 186, 746, 749
FspBI	CTAG	3 cut(s)	86, 326, 455
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	4 cut(s)	102, 186, 746, 749
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	4 cut(s)	165, 349, 459, 828
HapII	CCGG	2 cut(s)	80, 365
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	382, 495
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HinfI	GANTC	2 cut(s)	477, 652
HpaII	CCGG	2 cut(s)	80, 365
HphI	GGTGA	3 cut(s)	227, 266, 454
Hpy166II	GTNNAC	3 cut(s)	193, 258, 763
Hpy188I	TCNGA	3 cut(s)	124, 808, 820
Hpy188III	TCNNGA	2 cut(s)	23, 842
Hpy8I	GTNNAC	3 cut(s)	193, 258, 763
HpyCH4III	ACNGT	1 cut(s)	621
HpyCH4V	TGCA	9 cut(s)	59, 104, 152, 258, 266, 495, 524, 539, 748
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	2 cut(s)	693, 753
Hsp92II	CATG	2 cut(s)	382, 495
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	397, 768
LmnI	GCTCC	3 cut(s)	202, 252, 742
Lsp1109I	GCAGC	4 cut(s)	88, 197, 732, 760
LweI	GCATC	2 cut(s)	253, 785
MaeI	CTAG	3 cut(s)	86, 326, 455
MalI	GATC	2 cut(s)	399, 770
MboI	GATC	2 cut(s)	397, 768
MboII	GAAGA	2 cut(s)	452, 857
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	2 cut(s)	249, 260
MluCI	AATT	3 cut(s)	484, 663, 777
MlyI	GAGTC	2 cut(s)	486, 646
MmeI	TCCRAC	1 cut(s)	831
MnlI	CCTC	8 cut(s)	130, 388, 470, 543, 698, 748, 785, 814
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	4 cut(s)	387, 699, 710, 868
MslI	CAYNNNNRTG	1 cut(s)	307
MspA1I	CMGCKG	2 cut(s)	101, 188
MspI	CCGG	2 cut(s)	80, 365
MspR9I	CCNGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	2 cut(s)	397, 768
NlaIII	CATG	2 cut(s)	382, 495
OliI	CACNNNNGTG	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	141
PkrI	GCNGC	4 cut(s)	103, 187, 747, 750
PleI	GAGTC	2 cut(s)	485, 646
PpsI	GAGTC	2 cut(s)	485, 646
Psp124BI	GAGCTC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	827
PstI	CTGCAG	1 cut(s)	750
PsuI	RGATCY	1 cut(s)	397
PvuII	CAGCTG	2 cut(s)	101, 188
RseI	CAYNNNNRTG	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	4 cut(s)	387, 699, 710, 868
SatI	GCNGC	4 cut(s)	102, 186, 746, 749
Sau3AI	GATC	2 cut(s)	397, 768
Sau96I	GGNCC	1 cut(s)	827
SchI	GAGTC	2 cut(s)	486, 646
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	2 cut(s)	249, 260
SfaNI	GCATC	2 cut(s)	253, 785
SfcI	CTRYAG	1 cut(s)	746
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	2 cut(s)	242, 305
SmoI	CTYRAG	2 cut(s)	242, 305
Sse9I	AATT	3 cut(s)	484, 663, 777
SseBI	AGGCCT	1 cut(s)	459
SsiI	CCGC	1 cut(s)	183
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	86, 326, 455
SstI	GAGCTC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	621
TasI	AATT	3 cut(s)	484, 663, 777
Tru1I	TTAA	4 cut(s)	387, 699, 710, 868
Tru9I	TTAA	4 cut(s)	387, 699, 710, 868
TscAI	CASTG	3 cut(s)	154, 526, 592
TseI	GCWGC	4 cut(s)	101, 185, 745, 748
TspDTI	ATGAA	2 cut(s)	284, 332
TspGWI	ACGGA	3 cut(s)	215, 275, 588
TspRI	CASTG	3 cut(s)	154, 526, 592
VneI	GTGCAC	1 cut(s)	256
XagI	CCTNNNNNAGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	777
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	3 cut(s)	86, 326, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.