AT1G59960

Non-functional NADPH-dependent codeinone reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000205
Physical Location & Seq
Reverse (-)
22071217 .. 22073267
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59960.1

Sequence Viewer

Length: 981 bp
ATGTCTTTAACCACAGTCCCTACGCTCGCCATCAGATCCGGACCATCCGGTCATCACTCGATGCCGGTTCTTGGTTTTGGAACCGCCGCTTCTCCGCTACCGGAACCAACGATGCTGAAAGAGACGGTGATTGAGGCTATTAAGCTTGGTTATCGCCATTTCGACACCTCTCCAAGGTACCAAACGGAGGAGCCGATCGGCGAAGCTTTAGCGGAGGCGGTTTCACTCGGCTTAGTTCGATCTCGATCTGAATTCTTTGTCACTACCAAACTTTGGTGTGCTGATGCTCATGGTGGTCTCGTCGTACCGGCGATCAAACGGAGTTTGAAAAACCTTAAACTGGACTATCTTGATCTTTATATAATTCATTGGCCGGTTAGCTCGAAACCTGGTAAATACAAGTTTCCTATTGATGAAGATGATTTTATGCCAATGGATTTCGAAGTAGTGTGGTCTGAAATGGAGGAGTGTCAGAGACTTGGGCTCGCAAAATGCATAGGAGTAAGCAATTTTTCATGTAAGAAGCTTCAACACATACTCTCTATCGCGACAATCCCGCCTAGCGTCAATCAAGTTGAGATGAGTCCAATATGGCAACAAAGAAAGCTAAGGGAGCTTTGTAGATCGAACGACATTGTTGTCACAGCGTACTCGGTGTTGGGATCTAGAGGAGCTTTTTGGGGAACTCCCAAAATTATGGAATCTGATGTTCTCAAAGAAATAGCAGAAGCAAAGGAAAAAACAGTGGCCCAGGTGAGTATGAGATGGGCTTATGAACAAGGAGTGAGCATGGTAGTGAAGAGCTTTACCAAAGAGAGATTAGAAGAGAATCTAAAGATATTTGATTGGTCTTTGACAGAGGATGAGACACAGAGAATTTCAACTGAGATTCCTCAGTTCAGAAACGTCCACGGAGAGGTTTATACCTCTAAGAAAGGTCCCATCAAATCTGTCGCCGAGATGTGGGACGGGGAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

326

Amino Acids

36.73

Weight (kDa)

6.04

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 24 - 293 9.3e-53 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 48, 638
Acc65I GGTACC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 177
AccB7I CCANNNNNTGG 1 cut(s) 273
AccII CGCG 1 cut(s) 548
AccIII TCCGGA 1 cut(s) 38
AciI CCGC 6 cut(s) 84, 87, 95, 212, 218, 557
AclWI GGATC 2 cut(s) 30, 670
AcoI YGGCCR 1 cut(s) 371
AcsI RAATTY 2 cut(s) 251, 876
AfaI GTAC 3 cut(s) 179, 306, 650
AfiI CCNNNNNNNGG 7 cut(s) 71, 174, 187, 273, 340, 916, 963
AgsI TTSAA 3 cut(s) 328, 530, 882
AjnI CCWGG 2 cut(s) 388, 750
AluBI AGCT 8 cut(s) 145, 206, 381, 526, 607, 616, 674, 804
AluI AGCT 8 cut(s) 145, 206, 381, 526, 607, 616, 674, 804
Alw26I GTCTC 4 cut(s) 116, 302, 469, 860
AlwI GGATC 2 cut(s) 30, 670
Aor13HI TCCGGA 1 cut(s) 38
AoxI GGCC 2 cut(s) 371, 747
ApoI RAATTY 2 cut(s) 251, 876
Asp718I GGTACC 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 41, 748, 938
AsuHPI GGTGA 2 cut(s) 139, 766
AsuII TTCGAA 1 cut(s) 441
AvaII GGWCC 2 cut(s) 41, 938
BanI GGYRCC 1 cut(s) 177
BanII GRGCYC 1 cut(s) 486
BccI CCATC 4 cut(s) 38, 52, 759, 950
BciT130I CCWGG 2 cut(s) 390, 752
BcoDI GTCTC 4 cut(s) 116, 302, 469, 860
BfaI CTAG 2 cut(s) 561, 666
BglII AGATCT 1 cut(s) 975
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 2 cut(s) 390, 752
Bme18I GGWCC 2 cut(s) 41, 938
BmgT120I GGNCC 3 cut(s) 41, 748, 938
BmiI GGNNCC 5 cut(s) 82, 105, 179, 192, 940
BmrFI CCNGG 2 cut(s) 390, 752
BmsI GCATC 3 cut(s) 51, 102, 274
Bpu10I CCTNAGC 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 3 cut(s) 173, 750, 910
BsaWI WCCGGW 3 cut(s) 38, 47, 100
Bsc4I CCNNNNNNNGG 7 cut(s) 71, 174, 187, 273, 340, 916, 963
Bse118I RCCGGY 3 cut(s) 64, 307, 373
Bse1I ACTGG 1 cut(s) 345
Bse8I GATNNNNATC 1 cut(s) 244
BseAI TCCGGA 1 cut(s) 38
BseBI CCWGG 2 cut(s) 390, 752
BseDI CCNNGG 3 cut(s) 173, 750, 910
BseGI GGATG 2 cut(s) 44, 868
BseJI GATNNNNATC 1 cut(s) 244
BseLI CCNNNNNNNGG 7 cut(s) 71, 174, 187, 273, 340, 916, 963
BseMII CTCAG 2 cut(s) 876, 908
BseNI ACTGG 1 cut(s) 345
BseRI GAGGAG 3 cut(s) 203, 479, 684
Bsh1236I CGCG 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 373, 749
BshNI GGYRCC 1 cut(s) 177
BsiEI CGRYCG 1 cut(s) 198
BsiSI CCGG 6 cut(s) 39, 48, 65, 101, 308, 374
BslFI GGGAC 2 cut(s) 2, 924
BslI CCNNNNNNNGG 7 cut(s) 71, 174, 187, 273, 340, 916, 963
BsmAI GTCTC 4 cut(s) 116, 302, 469, 860
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 2 cut(s) 2, 924
BsnI GGCC 2 cut(s) 373, 749
Bso31I GGTCTC 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 486
Bsp13I TCCGGA 1 cut(s) 38
Bsp143I GATC 9 cut(s) 35, 195, 239, 245, 312, 352, 623, 662, 975
Bsp68I TCGCGA 1 cut(s) 548
BspACI CCGC 6 cut(s) 84, 87, 95, 212, 218, 557
BspANI GGCC 2 cut(s) 373, 749
BspCNI CTCAG 2 cut(s) 877, 907
BspEI TCCGGA 1 cut(s) 38
BspFNI CGCG 1 cut(s) 548
BspLI GGNNCC 5 cut(s) 82, 105, 179, 192, 940
BspPI GGATC 2 cut(s) 30, 670
BspQI GCTCTTC 1 cut(s) 794
BspT104I TTCGAA 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 177
BspTNI GGTCTC 1 cut(s) 302
BsrFI RCCGGY 3 cut(s) 64, 307, 373
BsrI ACTGG 1 cut(s) 345
BssAI RCCGGY 3 cut(s) 64, 307, 373
BssECI CCNNGG 3 cut(s) 173, 750, 910
BssMI GATC 9 cut(s) 35, 195, 239, 245, 312, 352, 623, 662, 975
BssT1I CCWWGG 1 cut(s) 173
Bst2UI CCWGG 2 cut(s) 390, 752
Bst4CI ACNGT 3 cut(s) 16, 127, 745
Bst6I CTCTTC 2 cut(s) 794, 819
BstBI TTCGAA 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 27, 486
BstDEI CTNAG 5 cut(s) 232, 608, 885, 894, 930
BstDSI CCRYGG 1 cut(s) 910
BstENI CCTNNNNNAGG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 44, 868
BstFNI CGCG 1 cut(s) 548
BstKTI GATC 9 cut(s) 38, 198, 242, 248, 315, 355, 626, 665, 978
BstMAI GTCTC 4 cut(s) 116, 302, 469, 860
BstMBI GATC 9 cut(s) 35, 195, 239, 245, 312, 352, 623, 662, 975
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 613
BstNI CCWGG 2 cut(s) 390, 752
BstSCI CCNGG 2 cut(s) 388, 750
BstUI CGCG 1 cut(s) 548
BstX2I RGATCY 3 cut(s) 35, 662, 975
BstXI CCANNNNNNTGG 1 cut(s) 697
BstYI RGATCY 3 cut(s) 35, 662, 975
BsuRI GGCC 2 cut(s) 373, 749
BtgI CCRYGG 1 cut(s) 910
BtsCI GGATG 2 cut(s) 44, 868
BtsIMutI CAGTG 1 cut(s) 750
BtuMI TCGCGA 1 cut(s) 548
Cac8I GCNNGC 2 cut(s) 27, 486
Cfr10I RCCGGY 3 cut(s) 64, 307, 373
Cfr13I GGNCC 3 cut(s) 41, 748, 938
CseI GACGC 1 cut(s) 553
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 3 cut(s) 178, 305, 649
CviAII CATG 3 cut(s) 290, 516, 790
CviQI GTAC 3 cut(s) 178, 305, 649
DdeI CTNAG 5 cut(s) 232, 608, 885, 894, 930
DpnI GATC 9 cut(s) 37, 197, 241, 247, 314, 354, 625, 664, 977
DpnII GATC 9 cut(s) 35, 195, 239, 245, 312, 352, 623, 662, 975
DrdI GACNNNNNNGTC 2 cut(s) 48, 638
DseDI GACNNNNNNGTC 2 cut(s) 48, 638
EaeI YGGCCR 1 cut(s) 371
Eam1104I CTCTTC 2 cut(s) 794, 819
EarI CTCTTC 2 cut(s) 794, 819
Eco130I CCWWGG 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 2 cut(s) 41, 938
EcoNI CCTNNNNNAGG 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 938
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 388, 750
EcoT14I CCWWGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 3 cut(s) 293, 519, 793
FaqI GGGAC 2 cut(s) 2, 924
FatI CATG 3 cut(s) 289, 515, 789
FauI CCCGC 1 cut(s) 564
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 2 cut(s) 31, 875
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 2 cut(s) 561, 666
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 2 cut(s) 373, 749
HapII CCGG 6 cut(s) 39, 48, 65, 101, 308, 374
HgaI GACGC 1 cut(s) 553
Hin1II CATG 3 cut(s) 293, 519, 793
HindIII AAGCTT 3 cut(s) 143, 204, 524
HinfI GANTC 4 cut(s) 583, 701, 829, 889
HpaII CCGG 6 cut(s) 39, 48, 65, 101, 308, 374
HphI GGTGA 2 cut(s) 139, 766
Hpy166II GTNNAC 1 cut(s) 910
Hpy188I TCNGA 7 cut(s) 35, 250, 457, 474, 706, 902, 980
Hpy188III TCNNGA 5 cut(s) 39, 243, 350, 547, 666
Hpy8I GTNNAC 1 cut(s) 910
Hpy99I CGWCG 1 cut(s) 305
HpyCH4III ACNGT 3 cut(s) 16, 127, 745
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 613
HpyF3I CTNAG 5 cut(s) 232, 608, 885, 894, 930
HpySE526I ACGT 1 cut(s) 906
Hsp92II CATG 3 cut(s) 293, 519, 793
Kpn2I TCCGGA 1 cut(s) 38
KpnI GGTACC 1 cut(s) 181
Kzo9I GATC 9 cut(s) 35, 195, 239, 245, 312, 352, 623, 662, 975
LguI GCTCTTC 1 cut(s) 794
LmnI GCTCC 3 cut(s) 190, 613, 671
LweI GCATC 3 cut(s) 51, 102, 274
MabI ACCWGGT 1 cut(s) 388
MaeI CTAG 2 cut(s) 561, 666
MaeII ACGT 1 cut(s) 906
MaeIII GTNAC 2 cut(s) 259, 640
MalI GATC 9 cut(s) 37, 197, 241, 247, 314, 354, 625, 664, 977
MboI GATC 9 cut(s) 35, 195, 239, 245, 312, 352, 623, 662, 975
MboII GAAGA 3 cut(s) 428, 811, 836
MflI RGATCY 3 cut(s) 35, 662, 975
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 5 cut(s) 251, 363, 508, 693, 876
MlyI GAGTC 1 cut(s) 592
Mph1103I ATGCAT 1 cut(s) 497
MroI TCCGGA 1 cut(s) 38
MseI TTAA 3 cut(s) 8, 141, 336
MslI CAYNNNNRTG 1 cut(s) 794
MspI CCGG 6 cut(s) 39, 48, 65, 101, 308, 374
MspR9I CCNGG 2 cut(s) 390, 752
MvaI CCWGG 2 cut(s) 390, 752
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 1 cut(s) 613
NdeII GATC 9 cut(s) 35, 195, 239, 245, 312, 352, 623, 662, 975
NlaIII CATG 3 cut(s) 293, 519, 793
NlaIV GGNNCC 5 cut(s) 82, 105, 179, 192, 940
NmeAIII GCCGAG 1 cut(s) 207
NmuCI GTSAC 2 cut(s) 259, 640
NruI TCGCGA 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 497
NspV TTCGAA 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 794
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PfeI GAWTC 3 cut(s) 701, 829, 889
PflMI CCANNNNNTGG 1 cut(s) 273
PkrI GCNGC 1 cut(s) 88
Ple19I CGATCG 1 cut(s) 198
PleI GAGTC 1 cut(s) 591
PpsI GAGTC 1 cut(s) 591
PpuMI RGGWCCY 1 cut(s) 938
Psp5II RGGWCCY 1 cut(s) 938
Psp6I CCWGG 2 cut(s) 388, 750
PspGI CCWGG 2 cut(s) 388, 750
PspN4I GGNNCC 5 cut(s) 82, 105, 179, 192, 940
PspPI GGNCC 3 cut(s) 41, 748, 938
PspPPI RGGWCCY 1 cut(s) 938
PsuI RGATCY 3 cut(s) 35, 662, 975
PvuI CGATCG 1 cut(s) 198
RruI TCGCGA 1 cut(s) 548
RsaI GTAC 3 cut(s) 179, 306, 650
RsaNI GTAC 3 cut(s) 178, 305, 649
RseI CAYNNNNRTG 1 cut(s) 794
SapI GCTCTTC 1 cut(s) 794
SaqAI TTAA 3 cut(s) 8, 141, 336
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 9 cut(s) 35, 195, 239, 245, 312, 352, 623, 662, 975
Sau96I GGNCC 3 cut(s) 41, 748, 938
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 2 cut(s) 390, 752
SduI GDGCHC 1 cut(s) 486
SexAI ACCWGGT 1 cut(s) 388
SfaNI GCATC 3 cut(s) 51, 102, 274
SfuI TTCGAA 1 cut(s) 441
SinI GGWCC 2 cut(s) 41, 938
SmiMI CAYNNNNRTG 1 cut(s) 794
Sse9I AATT 5 cut(s) 251, 363, 508, 693, 876
SsiI CCGC 6 cut(s) 84, 87, 95, 212, 218, 557
SspMI CTAG 2 cut(s) 561, 666
StyD4I CCNGG 2 cut(s) 388, 750
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 3 cut(s) 16, 127, 745
TaiI ACGT 1 cut(s) 909
TaqI TCGA 7 cut(s) 59, 162, 238, 244, 383, 441, 626
TasI AATT 5 cut(s) 251, 363, 508, 693, 876
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 3 cut(s) 701, 829, 889
Tru1I TTAA 3 cut(s) 8, 141, 336
Tru9I TTAA 3 cut(s) 8, 141, 336
TscAI CASTG 1 cut(s) 750
TseFI GTSAC 2 cut(s) 259, 640
Tsp45I GTSAC 2 cut(s) 259, 640
TspDTI ATGAA 4 cut(s) 356, 429, 504, 789
TspGWI ACGGA 3 cut(s) 200, 334, 927
TspRI CASTG 1 cut(s) 750
Van91I CCANNNNNTGG 1 cut(s) 273
VpaK11BI GGWCC 2 cut(s) 41, 938
XagI CCTNNNNNAGG 1 cut(s) 172
XapI RAATTY 2 cut(s) 251, 876
XbaI TCTAGA 1 cut(s) 665
XspI CTAG 2 cut(s) 561, 666
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.