Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Forward (+)

15829148 .. 15830880

Gene Structure 1733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGAGAACATAAGCAATATTCCGGAGTTGGCGCTAACCGTCGTCCCAAGTAGTATTGCAAGTGATAAAAGCAGTATTCCTGCTGGGTTGGGTTTAGGAACTGCTGCATATCCTTTTGTTGCCTCTGAAGCGGCAAAAGAAGCCATTCTCACTGCAATCCAAGTCGGCTACAGACATTTTGATACCGCTGCTGTTTACCAGACGGAGCCAGTTCTTGGTGAAGCCATTGCCGAAGCTCTTTCACTTGGCCTCGTCAAATCCCGGGATGAGCTTTTTGTTACTTCCAAGCTTTGGTGCACGGATGCACACCATCACCTTGTCCTGCCTGCCATTCATAAAACACTCAAGAATCTAGGATTGGAATACCTAGATTTGTATCTCATTCATTGGCCTATGAGTTTGGAGCCGGGAAGCCATGACATACCTTTTAAGAAAGAGCATCTTCTTCCTATGGACTTCAAGTCGGTGTGGGAAGCAATGGAAGAGTGCCAGAAGCTAGGCCTCACCAAGGCAATAGGAGTCAGCAATTTCTCATGCAAAAAGATTGAAATCTTGCTTTCCACTGCAAAAATCCCTCCTGCAGTCAACCAAGTGGAGATGAACCCACTATGGCAGCAGAAAAAGCTGAGAGAGTTTTGTGCAAGAAAAGGTATAATCATCACTGCCTACTCTCCTTTGGGGGCAAAAGGGACACCGTGGGGAACAAATGGAGTGATGGAATGTGAGACGCTCAAACAAATTGCTGAAGCAAAAGGGAAAACTATTGCTCAGGTTTGTCTGAGATGGGCATATGAGCAAGGGGTAAGTGTGGTGGTGAAGAGCTTTAACAAAGAGAGGATTAAGGAAAATATGGACATATTTGAATGGGAGCTGCTGCCTGAGGAAGTTGACAAGATCAATCAAATTCCACAAAAGAGAGGATGTCAAGCATCCGAGTTCGTTTCAGATAATGGCCCTTTCAAGTCTATAGAAGAGCTTTGGGATGGAGATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

331

Amino Acids

36.75

Weight (kDa)

5.59

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	30 - 302	1.4e-59	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	215, 291
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	2 cut(s)	131, 186
AcsI	RAATTY	1 cut(s)	903
AcuI	CTGAAG	2 cut(s)	147, 765
AfiI	CCNNNNNNNGG	3 cut(s)	215, 291, 508
AgsI	TTSAA	4 cut(s)	460, 548, 863, 961
AhdI	GACNNNNNGTC	1 cut(s)	460
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	8 cut(s)	236, 271, 289, 496, 625, 822, 871, 976
AluI	AGCT	8 cut(s)	236, 271, 289, 496, 625, 822, 871, 976
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	719
Alw44I	GTGCAC	1 cut(s)	295
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	4 cut(s)	247, 389, 499, 952
ApaLI	GTGCAC	1 cut(s)	295
ApeKI	GCWGC	5 cut(s)	104, 188, 613, 871, 874
ApoI	RAATTY	1 cut(s)	903
Asp700I	GAANNNNTTC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	953
AsuC2I	CCSGG	3 cut(s)	262, 263, 408
AsuHPI	GGTGA	4 cut(s)	230, 305, 496, 826
AvaI	CYCGRG	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	879
BaeGI	GKGCMC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	5 cut(s)	91, 175, 625, 858, 861
BccI	CCATC	4 cut(s)	318, 709, 777, 977
BcnI	CCSGG	3 cut(s)	262, 263, 408
BcoDI	GTCTC	1 cut(s)	719
BfaI	CTAG	3 cut(s)	353, 368, 497
BfmI	CTRYAG	3 cut(s)	169, 579, 966
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	6 cut(s)	105, 132, 189, 614, 872, 875
BlsI	GCNGC	6 cut(s)	106, 133, 190, 615, 873, 876
Bme1390I	CCNGG	3 cut(s)	262, 263, 408
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	953
BmiI	GGNNCC	2 cut(s)	207, 405
BmrFI	CCNGG	3 cut(s)	262, 263, 408
BmsI	GCATC	3 cut(s)	292, 448, 938
Bpu10I	CCTNAGC	1 cut(s)	768
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	3 cut(s)	262, 263, 408
BsaBI	GATNNNNATC	2 cut(s)	375, 548
BsaJI	CCNNGG	3 cut(s)	261, 507, 695
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 291, 508
Bse1I	ACTGG	1 cut(s)	209
Bse21I	CCTNAGG	1 cut(s)	879
Bse3DI	GCAATG	2 cut(s)	225, 483
Bse8I	GATNNNNATC	2 cut(s)	375, 548
BseAI	TCCGGA	1 cut(s)	22
BseDI	CCNNGG	3 cut(s)	261, 507, 695
BseGI	GGATG	5 cut(s)	271, 307, 926, 929, 988
BseJI	GATNNNNATC	2 cut(s)	375, 548
BseLI	CCNNNNNNNGG	3 cut(s)	215, 291, 508
BseMI	GCAATG	2 cut(s)	225, 483
BseMII	CTCAG	4 cut(s)	617, 770, 782, 870
BseNI	ACTGG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	5 cut(s)	91, 175, 625, 858, 861
BseYI	CCCAGC	1 cut(s)	83
BshFI	GGCC	4 cut(s)	249, 391, 501, 954
BsiHKAI	GWGCWC	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	3 cut(s)	23, 262, 407
BslFI	GGGAC	2 cut(s)	29, 703
BslI	CCNNNNNNNGG	3 cut(s)	215, 291, 508
BsmAI	GTCTC	1 cut(s)	719
BsmBI	CGTCTC	1 cut(s)	719
BsmFI	GGGAC	2 cut(s)	29, 703
BsnI	GGCC	4 cut(s)	249, 391, 501, 954
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	894
BspACI	CCGC	2 cut(s)	131, 186
BspANI	GGCC	4 cut(s)	249, 391, 501, 954
BspCNI	CTCAG	4 cut(s)	618, 771, 781, 871
BspEI	TCCGGA	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	207, 405
BspMAI	CTGCAG	1 cut(s)	583
BspQI	GCTCTTC	2 cut(s)	812, 966
BsrDI	GCAATG	2 cut(s)	225, 483
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	261, 507, 695
BssMI	GATC	1 cut(s)	894
BssT1I	CCWWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	40, 696
Bst6I	CTCTTC	3 cut(s)	477, 812, 966
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	4 cut(s)	626, 768, 779, 879
BstDSI	CCRYGG	1 cut(s)	695
BstENI	CCTNNNNNAGG	1 cut(s)	506
BstF5I	GGATG	5 cut(s)	271, 307, 926, 929, 988
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	897
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	1 cut(s)	894
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 140, 622
BstSCI	CCNGG	3 cut(s)	260, 261, 406
BstSFI	CTRYAG	3 cut(s)	169, 579, 966
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	5 cut(s)	91, 175, 625, 858, 861
Bsu36I	CCTNAGG	1 cut(s)	879
BsuRI	GGCC	4 cut(s)	249, 391, 501, 954
BtgI	CCRYGG	1 cut(s)	695
BtsCI	GGATG	5 cut(s)	271, 307, 926, 929, 988
BtsI	GCAGTG	3 cut(s)	150, 561, 660
BtsIMutI	CAGTG	3 cut(s)	150, 561, 660
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	953
Cfr9I	CCCGGG	1 cut(s)	261
CseI	GACGC	1 cut(s)	736
CviAII	CATG	2 cut(s)	416, 534
DdeI	CTNAG	4 cut(s)	626, 768, 779, 879
DpnI	GATC	1 cut(s)	896
DpnII	GATC	1 cut(s)	894
DriI	GACNNNNNGTC	1 cut(s)	460
Eam1104I	CTCTTC	3 cut(s)	477, 812, 966
Eam1105I	GACNNNNNGTC	1 cut(s)	460
EarI	CTCTTC	3 cut(s)	477, 812, 966
Eco130I	CCWWGG	1 cut(s)	507
Eco147I	AGGCCT	1 cut(s)	501
Eco57I	CTGAAG	2 cut(s)	147, 765
Eco81I	CCTNAGG	1 cut(s)	879
Eco88I	CYCGRG	1 cut(s)	261
EcoNI	CCTNNNNNAGG	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	507
Esp3I	CGTCTC	1 cut(s)	719
FaeI	CATG	2 cut(s)	419, 537
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FaqI	GGGAC	2 cut(s)	29, 703
FatI	CATG	2 cut(s)	415, 533
FauNDI	CATATG	1 cut(s)	790
Fnu4HI	GCNGC	6 cut(s)	105, 132, 189, 614, 872, 875
FokI	GGATG	4 cut(s)	278, 314, 916, 933
Fsp4HI	GCNGC	6 cut(s)	105, 132, 189, 614, 872, 875
FspBI	CTAG	3 cut(s)	353, 368, 497
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	6 cut(s)	105, 132, 189, 614, 872, 875
GsaI	CCCAGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	4 cut(s)	249, 391, 501, 954
HapII	CCGG	3 cut(s)	23, 262, 407
HgaI	GACGC	1 cut(s)	736
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	419, 537
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	2 cut(s)	586, 889
HindII	GTYRAC	2 cut(s)	586, 889
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	2 cut(s)	349, 519
HpaII	CCGG	3 cut(s)	23, 262, 407
HphI	GGTGA	4 cut(s)	230, 305, 496, 826
Hpy166II	GTNNAC	4 cut(s)	196, 297, 586, 889
Hpy188I	TCNGA	4 cut(s)	127, 780, 934, 946
Hpy188III	TCNNGA	2 cut(s)	23, 346
Hpy8I	GTNNAC	4 cut(s)	196, 297, 586, 889
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	40, 696
HpyCH4V	TGCA	9 cut(s)	59, 107, 155, 297, 305, 537, 566, 581, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 140, 622
HpyF3I	CTNAG	4 cut(s)	626, 768, 779, 879
Hsp92II	CATG	2 cut(s)	419, 537
HspAI	GCGC	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	894
LguI	GCTCTTC	2 cut(s)	812, 966
LmnI	GCTCC	3 cut(s)	205, 403, 868
Lsp1109I	GCAGC	5 cut(s)	91, 175, 625, 858, 861
LweI	GCATC	3 cut(s)	292, 448, 938
MaeI	CTAG	3 cut(s)	353, 368, 497
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	896
MboI	GATC	1 cut(s)	894
MboII	GAAGA	5 cut(s)	434, 437, 494, 829, 983
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	3 cut(s)	526, 738, 903
MlyI	GAGTC	1 cut(s)	528
MnlI	CCTC	7 cut(s)	133, 260, 512, 585, 828, 874, 911
MroI	TCCGGA	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	4 cut(s)	429, 825, 840, 994
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	3 cut(s)	23, 262, 407
MspR9I	CCNGG	3 cut(s)	262, 263, 408
MwoI	GCNNNNNNNGC	3 cut(s)	128, 140, 622
NciI	CCSGG	3 cut(s)	262, 263, 408
NdeI	CATATG	1 cut(s)	790
NdeII	GATC	1 cut(s)	894
NlaIII	CATG	2 cut(s)	419, 537
NlaIV	GGNNCC	2 cut(s)	207, 405
PceI	AGGCCT	1 cut(s)	501
PciSI	GCTCTTC	2 cut(s)	812, 966
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	349
PflMI	CCANNNNNTGG	2 cut(s)	215, 291
PkrI	GCNGC	6 cut(s)	106, 133, 190, 615, 873, 876
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	207, 405
PspPI	GGNCC	1 cut(s)	953
PstI	CTGCAG	1 cut(s)	583
SapI	GCTCTTC	2 cut(s)	812, 966
SaqAI	TTAA	4 cut(s)	429, 825, 840, 994
SatI	GCNGC	6 cut(s)	105, 132, 189, 614, 872, 875
Sau3AI	GATC	1 cut(s)	894
Sau96I	GGNCC	1 cut(s)	953
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	3 cut(s)	262, 263, 408
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	3 cut(s)	292, 448, 938
SfcI	CTRYAG	3 cut(s)	169, 579, 966
SmaI	CCCGGG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	3 cut(s)	526, 738, 903
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	2 cut(s)	131, 186
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	353, 368, 497
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	3 cut(s)	260, 261, 406
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	40, 696
TasI	AATT	3 cut(s)	526, 738, 903
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	4 cut(s)	429, 825, 840, 994
Tru9I	TTAA	4 cut(s)	429, 825, 840, 994
TscAI	CASTG	3 cut(s)	157, 568, 667
TseI	GCWGC	5 cut(s)	104, 188, 613, 871, 874
TspDTI	ATGAA	3 cut(s)	323, 374, 614
TspGWI	ACGGA	2 cut(s)	218, 314
TspMI	CCCGGG	1 cut(s)	261
TspRI	CASTG	3 cut(s)	157, 568, 667
Van91I	CCANNNNNTGG	2 cut(s)	215, 291
VneI	GTGCAC	1 cut(s)	295
XagI	CCTNNNNNAGG	1 cut(s)	506
XapI	RAATTY	1 cut(s)	903
XmaI	CCCGGG	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	3 cut(s)	353, 368, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.