Rh4CG342400

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000205
Physical Location & Seq
Forward (+)
60158607 .. 60160583
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG342400.1

Sequence Viewer

Length: 756 bp
ATGGCAGCAACCCAAATCCCAGTGGTGATTCTTGAATCCTCCAATGGCCGCAGGACCATGCCTGTGCTTGGCTTCGGCACAGCATCCAACAATTTACAACCAGAGGTTTTGATAGAAGCTGTTCTCGAGGCCATCAAGCTCGGTTACTGCCACTTCGACACGGCCTCCCTGTACGGCTCAGAGCAGAGTCTGGGAGTAGCCATAGCCCAAGCACTCAAACTCGGCCTCGTGGCTTCTCGGGACGACCTCTTCATCACTTCCAAGCTTTGGTCTAATGCTGCTCACCCTGATTTGGTTCTTCCTGCTCTAAAGAAATCGCTTCAGAATCTTCAATTGGATTACCTTGATCTGTATCTGATTCACTGGCCCATCAGTGCCACGCCTGGGAAATTGAGTCACTATCTCGAGGAGAAGGACCAAATACCGATGGACTTCAAGGGTGTGTGGGCAGCCATGGAAGAAGCTCAGAGACTTGGCCTCACCAAATCCATTGGAATCAGCAATTTCTCTACTAAAAAGACTGAGAATTTGCTCTCTTTTGCTACCATTCCTCCTTCAGTCAATCAAGTTGAGATGAGCCCATTTTGGCAACAGAAGAAGCTCAGAGACTTCTGCAAGGCGAATGGTATAGTTGTGACTGCCTTCTCCCCATTGGGTGCCATAGGAACCAATTGGGGCACCAATCATGTTCTCGAAAGCCAAGTGCTCAATGAAATCGCCGAGGCTCGGGGAAAGACTGTTGCTCAGGTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

251

Amino Acids

27.43

Weight (kDa)

6.21

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 222 4.5e-44 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 656, 677
AccB7I CCANNNNNTGG 1 cut(s) 267
AciI CCGC 1 cut(s) 49
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 2 cut(s) 305, 540
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 5 cut(s) 68, 267, 292, 384, 726
AgsI TTSAA 3 cut(s) 35, 332, 436
AjnI CCWGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 5 cut(s) 119, 139, 265, 464, 601
AluI AGCT 5 cut(s) 119, 139, 265, 464, 601
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 2 cut(s) 463, 600
AlwNI CAGNNNCTG 1 cut(s) 190
Ama87I CYCGRG 4 cut(s) 125, 237, 404, 726
AoxI GGCC 6 cut(s) 46, 129, 162, 223, 365, 475
ApeKI GCWGC 3 cut(s) 5, 278, 449
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 2 cut(s) 511, 543
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 3 cut(s) 54, 366, 415
AsuHPI GGTGA 3 cut(s) 37, 275, 472
AvaI CYCGRG 4 cut(s) 125, 237, 404, 726
AvaII GGWCC 2 cut(s) 54, 415
BaeGI GKGCMC 1 cut(s) 680
BanI GGYRCC 2 cut(s) 656, 677
BanII GRGCYC 1 cut(s) 581
BauI CACGAG 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 708
BbvI GCAGC 3 cut(s) 17, 265, 461
BccI CCATC 3 cut(s) 140, 377, 421
BceAI ACGGC 2 cut(s) 177, 190
BciT130I CCWGG 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 463, 600
BisI GCNGC 4 cut(s) 6, 49, 279, 450
BlsI GCNGC 4 cut(s) 7, 50, 280, 451
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 2 cut(s) 54, 415
BmeT110I CYCGRG 4 cut(s) 125, 237, 404, 726
BmgT120I GGNCC 3 cut(s) 54, 366, 415
BmiI GGNNCC 3 cut(s) 658, 667, 679
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 92
BmuI ACTGGG 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 744
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 383, 453, 720
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 535, 565
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 267, 292, 384, 726
Bse1I ACTGG 2 cut(s) 20, 368
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 3 cut(s) 383, 453, 720
BseGI GGATG 1 cut(s) 83
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 5 cut(s) 68, 267, 292, 384, 726
BseMII CTCAG 4 cut(s) 192, 479, 513, 616
BseNI ACTGG 2 cut(s) 20, 368
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 680
BseXI GCAGC 3 cut(s) 17, 265, 461
BshFI GGCC 6 cut(s) 48, 131, 164, 225, 367, 477
BshNI GGYRCC 2 cut(s) 656, 677
BsiHKAI GWGCWC 1 cut(s) 708
BsiHKCI CYCGRG 4 cut(s) 125, 237, 404, 726
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 5 cut(s) 68, 267, 292, 384, 726
BsmAI GTCTC 2 cut(s) 463, 600
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 6 cut(s) 48, 131, 164, 225, 367, 477
BsoBI CYCGRG 4 cut(s) 125, 237, 404, 726
Bsp1286I GDGCHC 3 cut(s) 581, 680, 708
Bsp143I GATC 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 1 cut(s) 49
BspANI GGCC 6 cut(s) 48, 131, 164, 225, 367, 477
BspCNI CTCAG 4 cut(s) 191, 478, 514, 615
BspLI GGNNCC 3 cut(s) 658, 667, 679
BspT107I GGYRCC 2 cut(s) 656, 677
BsrI ACTGG 2 cut(s) 20, 368
BssECI CCNNGG 3 cut(s) 383, 453, 720
BssMI GATC 1 cut(s) 346
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 453
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 739
Bst6I CTCTTC 1 cut(s) 254
BstDEI CTNAG 5 cut(s) 178, 465, 522, 602, 744
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 2 cut(s) 463, 600
BstMBI GATC 1 cut(s) 346
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 382
BstSLI GKGCMC 1 cut(s) 680
BstV1I GCAGC 3 cut(s) 17, 265, 461
BsuRI GGCC 6 cut(s) 48, 131, 164, 225, 367, 477
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 3 cut(s) 27, 361, 379
CaiI CAGNNNCTG 1 cut(s) 190
Cfr13I GGNCC 3 cut(s) 54, 366, 415
Csp6I GTAC 1 cut(s) 172
CviAII CATG 3 cut(s) 58, 454, 686
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 5 cut(s) 178, 465, 522, 602, 744
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 581
Eco47I GGWCC 2 cut(s) 54, 415
Eco57I CTGAAG 2 cut(s) 305, 540
Eco88I CYCGRG 4 cut(s) 125, 237, 404, 726
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 3 cut(s) 61, 457, 689
FaiI YATR 6 cut(s) 59, 203, 455, 629, 662, 687
FaqI GGGAC 1 cut(s) 254
FatI CATG 3 cut(s) 57, 453, 685
Fnu4HI GCNGC 4 cut(s) 6, 49, 279, 450
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 581
Fsp4HI GCNGC 4 cut(s) 6, 49, 279, 450
GluI GCNGC 4 cut(s) 6, 49, 279, 450
HaeIII GGCC 6 cut(s) 48, 131, 164, 225, 367, 477
Hin1II CATG 3 cut(s) 61, 457, 689
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 7 cut(s) 28, 35, 187, 325, 358, 394, 495
HphI GGTGA 3 cut(s) 37, 275, 472
Hpy188I TCNGA 5 cut(s) 181, 324, 357, 468, 605
Hpy188III TCNNGA 5 cut(s) 32, 125, 239, 404, 692
HpyAV CCTTC 3 cut(s) 406, 564, 652
HpyCH4III ACNGT 1 cut(s) 739
HpyCH4V TGCA 1 cut(s) 615
HpyF3I CTNAG 5 cut(s) 178, 465, 522, 602, 744
Hsp92II CATG 3 cut(s) 61, 457, 689
Kzo9I GATC 1 cut(s) 346
Lsp1109I GCAGC 3 cut(s) 17, 265, 461
LweI GCATC 1 cut(s) 92
MaeIII GTNAC 3 cut(s) 143, 395, 634
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 5 cut(s) 241, 290, 320, 470, 607
MfeI CAATTG 2 cut(s) 332, 670
MhlI GDGCHC 3 cut(s) 581, 680, 708
MluCI AATT 7 cut(s) 91, 332, 389, 502, 526, 670, 751
MlyI GAGTC 2 cut(s) 196, 403
MmeI TCCRAC 1 cut(s) 111
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 1 cut(s) 750
MslI CAYNNNNRTG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 384
MunI CAATTG 2 cut(s) 332, 670
MvaI CCWGG 1 cut(s) 384
NcoI CCATGG 1 cut(s) 453
NdeII GATC 1 cut(s) 346
NlaIII CATG 3 cut(s) 61, 457, 689
NlaIV GGNNCC 3 cut(s) 658, 667, 679
NmeAIII GCCGAG 2 cut(s) 201, 745
NmuCI GTSAC 2 cut(s) 395, 634
PaeR7I CTCGAG 2 cut(s) 125, 404
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 5 cut(s) 28, 35, 325, 358, 495
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 4 cut(s) 7, 50, 280, 451
PleI GAGTC 2 cut(s) 195, 402
PpsI GAGTC 2 cut(s) 195, 402
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 3 cut(s) 658, 667, 679
PspPI GGNCC 3 cut(s) 54, 366, 415
PstNI CAGNNNCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 1 cut(s) 750
SatI GCNGC 4 cut(s) 6, 49, 279, 450
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 3 cut(s) 54, 366, 415
SchI GAGTC 2 cut(s) 196, 403
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 3 cut(s) 581, 680, 708
SetI ASST 9 cut(s) 108, 121, 141, 249, 267, 345, 466, 603, 750
SfaNI GCATC 1 cut(s) 92
Sfr274I CTCGAG 2 cut(s) 125, 404
SinI GGWCC 2 cut(s) 54, 415
SlaI CTCGAG 2 cut(s) 125, 404
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 125, 404
SmoI CTYRAG 2 cut(s) 125, 404
Sse9I AATT 7 cut(s) 91, 332, 389, 502, 526, 670, 751
SsiI CCGC 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 1 cut(s) 739
TaqI TCGA 4 cut(s) 126, 156, 405, 693
TasI AATT 7 cut(s) 91, 332, 389, 502, 526, 670, 751
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 5 cut(s) 28, 35, 325, 358, 495
Tru1I TTAA 1 cut(s) 750
Tru9I TTAA 1 cut(s) 750
TscAI CASTG 3 cut(s) 27, 368, 379
TseFI GTSAC 2 cut(s) 395, 634
TseI GCWGC 3 cut(s) 5, 278, 449
Tsp45I GTSAC 2 cut(s) 395, 634
TspDTI ATGAA 2 cut(s) 241, 726
TspRI CASTG 3 cut(s) 27, 368, 379
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 54, 415
XapI RAATTY 1 cut(s) 526
XhoI CTCGAG 2 cut(s) 125, 404
XmnI GAANNNNTTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.