RLG00000005744

oxidoreductase activity

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
1381654 .. 1383526
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005744

Sequence Viewer

Length: 891 bp
ATGGCTTCAAGGGCCAATTTACTAGGACAATATATGATTATCAAGTTCCTCCTTGGCCCGGCGCCGCGGCAGAGGCCGTGGCCGGGGCTGGGGTTGTGGTTGGGAGAAAAAGAAGCCATTCTCAGTGCAATCAAAATTGGTTACAGACATTTTGATACGGCAGCGGCTTACCAGACTGAGCAAGTTCTTGGTGAAGCTATCGGCGAAGCTATTTCTCTTGGCCTCATCAAATCCCGGGATGAACTTTTTGTTACTTCCAAGCTTTGGTGCTGTGATGCACACCCTCACCGTGTCCTCCCTGCCATTCAGAACACCCTCAAGAATCTGAGATTGGAGTACCTTAACCTTTATCTGATTCATTGGCCTGTGAGTTTGAAGACAGGAAGCTATGACTTTCCTGTTAACAAAGAGCACCTTCTTCCTATAGACTTTAAGGGGGGCCTCACCAAGTCCATTGGAGTCTGCAATTTTTCATGCAAAAAGATCGAAACCTTGCTTGCCACTGCCAAAATCCCTCCTGCCGTCAATCAAGTGGAGATGAATCCAGTATGGCGGCAGAAGAAGTTGAGAGAATTGTGTAAGAGAAAGGGTATAATTGTCACGGCCTACTCTCCTTTGGGGGGAAAAGGAACGTACACCTTGGGGATCAAACGCGGTAATGGAATGTGGAAGTCCTCAAACAGATTGCAGATGCAAAAGGAAAATCTCTTGCTCAGCTTCAATAAGGACAAGATCAAAGAAAATGTGGAAATATTTGACTGGAAGCTAAATCCTGAGGAGCTGGAAAAGATAGATCAAATCCCGCAGAAAAGAGGATATCTCGCATTTGAATTCATAGCTGATCAAGGCCCTTACAAGTCTCCTGAAGAGCTTTGGGATGGAGAAGTTTAA

Protein Analysis

297

Amino Acids

33.64

Weight (kDa)

9.25

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 38 - 219 1.3e-34 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 264
AccII CGCG 2 cut(s) 67, 654
AciI CCGC 6 cut(s) 65, 67, 164, 553, 654, 803
AclWI GGATC 1 cut(s) 653
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 1 cut(s) 830
AcuI CTGAAG 1 cut(s) 885
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 338, 635
AfiI CCNNNNNNNGG 5 cut(s) 58, 83, 89, 264, 620
AgsI TTSAA 4 cut(s) 9, 376, 721, 830
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 9 cut(s) 197, 209, 262, 387, 717, 766, 781, 839, 871
AluI AGCT 9 cut(s) 197, 209, 262, 387, 717, 766, 781, 839, 871
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 1 cut(s) 864
AlwI GGATC 1 cut(s) 653
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 9 cut(s) 12, 55, 74, 80, 220, 362, 439, 603, 847
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 830
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 4 cut(s) 12, 56, 439, 848
AsuC2I CCSGG 4 cut(s) 59, 84, 235, 236
AsuHPI GGTGA 3 cut(s) 203, 278, 436
AvaI CYCGRG 1 cut(s) 234
AxyI CCTNAGG 1 cut(s) 774
BanI GGYRCC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 173
BccI CCATC 1 cut(s) 872
BceAI ACGGC 4 cut(s) 61, 174, 506, 618
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BclI TGATCA 1 cut(s) 841
BcnI CCSGG 4 cut(s) 59, 84, 235, 236
BcoDI GTCTC 1 cut(s) 864
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 423
BfoI RGCGCY 1 cut(s) 65
BisI GCNGC 5 cut(s) 65, 68, 162, 165, 554
BlpI GCTNAGC 1 cut(s) 713
BlsI GCNGC 5 cut(s) 66, 69, 163, 166, 555
Bme1390I CCNGG 4 cut(s) 59, 84, 235, 236
BmeT110I CYCGRG 1 cut(s) 234
BmgT120I GGNCC 4 cut(s) 12, 56, 439, 848
BmiI GGNNCC 2 cut(s) 63, 440
BmrFI CCNGG 4 cut(s) 59, 84, 235, 236
BmsI GCATC 2 cut(s) 265, 681
BpiI GAAGAC 1 cut(s) 383
BplI GAGNNNNNCTC 2 cut(s) 804, 836
Bpu1102I GCTNAGC 1 cut(s) 713
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 4 cut(s) 59, 84, 235, 236
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 6 cut(s) 52, 65, 77, 83, 234, 639
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 83, 89, 264, 620
Bse1I ACTGG 2 cut(s) 545, 764
Bse21I CCTNAGG 1 cut(s) 774
BseDI CCNNGG 6 cut(s) 52, 65, 77, 83, 234, 639
BseGI GGATG 2 cut(s) 244, 883
BseLI CCNNNNNNNGG 5 cut(s) 58, 83, 89, 264, 620
BseMII CTCAG 5 cut(s) 136, 168, 317, 727, 765
BseNI ACTGG 2 cut(s) 545, 764
BseRI GAGGAG 1 cut(s) 791
BseXI GCAGC 1 cut(s) 173
BseYI CCCAGC 1 cut(s) 88
Bsh1236I CGCG 2 cut(s) 67, 654
BshFI GGCC 9 cut(s) 14, 57, 76, 82, 222, 364, 441, 605, 849
BshNI GGYRCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 3 cut(s) 59, 83, 235
BslI CCNNNNNNNGG 5 cut(s) 58, 83, 89, 264, 620
BsmAI GTCTC 1 cut(s) 864
BsnI GGCC 9 cut(s) 14, 57, 76, 82, 222, 364, 441, 605, 849
BsoBI CYCGRG 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 5 cut(s) 483, 645, 732, 793, 841
Bsp1720I GCTNAGC 1 cut(s) 713
BspACI CCGC 6 cut(s) 65, 67, 164, 553, 654, 803
BspANI GGCC 9 cut(s) 14, 57, 76, 82, 222, 364, 441, 605, 849
BspCNI CTCAG 5 cut(s) 135, 169, 318, 726, 766
BspFNI CGCG 2 cut(s) 67, 654
BspLI GGNNCC 2 cut(s) 63, 440
BspPI GGATC 1 cut(s) 653
BspQI GCTCTTC 1 cut(s) 861
BspT107I GGYRCC 1 cut(s) 61
BsrI ACTGG 2 cut(s) 545, 764
BssECI CCNNGG 6 cut(s) 52, 65, 77, 83, 234, 639
BssMI GATC 5 cut(s) 483, 645, 732, 793, 841
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 2 cut(s) 52, 639
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 861
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 5 cut(s) 122, 177, 326, 713, 774
BstDSI CCRYGG 2 cut(s) 65, 77
BstF5I GGATG 2 cut(s) 244, 883
BstFNI CGCG 2 cut(s) 67, 654
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 5 cut(s) 486, 648, 735, 796, 844
BstMAI GTCTC 1 cut(s) 864
BstMBI GATC 5 cut(s) 483, 645, 732, 793, 841
BstMWI GCNNNNNNNGC 2 cut(s) 11, 73
BstSCI CCNGG 4 cut(s) 57, 82, 233, 234
BstSFI CTRYAG 1 cut(s) 423
BstUI CGCG 2 cut(s) 67, 654
BstV1I GCAGC 1 cut(s) 173
BstV2I GAAGAC 1 cut(s) 383
Bsu36I CCTNAGG 1 cut(s) 774
BsuRI GGCC 9 cut(s) 14, 57, 76, 82, 222, 364, 441, 605, 849
BtgI CCRYGG 2 cut(s) 65, 77
BtsCI GGATG 2 cut(s) 244, 883
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 130, 501
Cac8I GCNNGC 1 cut(s) 498
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 4 cut(s) 12, 56, 439, 848
Cfr42I CCGCGG 1 cut(s) 68
Cfr9I CCCGGG 1 cut(s) 234
Csp6I GTAC 2 cut(s) 337, 634
CviAII CATG 1 cut(s) 474
CviQI GTAC 2 cut(s) 337, 634
DdeI CTNAG 5 cut(s) 122, 177, 326, 713, 774
DinI GGCGCC 1 cut(s) 63
DpnI GATC 5 cut(s) 485, 647, 734, 795, 843
DpnII GATC 5 cut(s) 483, 645, 732, 793, 841
EaeI YGGCCR 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 861
EarI CTCTTC 1 cut(s) 861
Eco130I CCWWGG 2 cut(s) 52, 639
Eco32I GATATC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 885
Eco81I CCTNAGG 1 cut(s) 774
Eco88I CYCGRG 1 cut(s) 234
EcoO109I RGGNCCY 2 cut(s) 439, 848
EcoRI GAATTC 1 cut(s) 830
EcoRV GATATC 1 cut(s) 818
EcoT14I CCWWGG 2 cut(s) 52, 639
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 52, 639
FaeI CATG 1 cut(s) 477
FaiI YATR 8 cut(s) 33, 35, 390, 425, 475, 550, 593, 836
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 1 cut(s) 473
FauI CCCGC 1 cut(s) 810
FbaI TGATCA 1 cut(s) 841
Fnu4HI GCNGC 5 cut(s) 65, 68, 162, 165, 554
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 5 cut(s) 65, 68, 162, 165, 554
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 63
GluI GCNGC 5 cut(s) 65, 68, 162, 165, 554
GsaI CCCAGC 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 9 cut(s) 14, 57, 76, 82, 222, 364, 441, 605, 849
HapII CCGG 3 cut(s) 59, 83, 235
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 1 cut(s) 477
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 4 cut(s) 322, 355, 459, 541
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 3 cut(s) 59, 83, 235
HphI GGTGA 3 cut(s) 203, 278, 436
Hpy166II GTNNAC 2 cut(s) 403, 636
Hpy188I TCNGA 3 cut(s) 309, 327, 354
Hpy188III TCNNGA 3 cut(s) 319, 773, 863
Hpy8I GTNNAC 2 cut(s) 403, 636
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 6 cut(s) 128, 278, 465, 477, 688, 694
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 73
HpyF3I CTNAG 5 cut(s) 122, 177, 326, 713, 774
HpySE526I ACGT 1 cut(s) 632
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 1 cut(s) 477
HspAI GCGC 1 cut(s) 62
KasI GGCGCC 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 841
KspAI GTTAAC 1 cut(s) 403
KspI CCGCGG 1 cut(s) 68
Kzo9I GATC 5 cut(s) 483, 645, 732, 793, 841
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 1 cut(s) 778
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 2 cut(s) 265, 681
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 3 cut(s) 140, 250, 598
MalI GATC 5 cut(s) 485, 647, 734, 795, 843
MboI GATC 5 cut(s) 483, 645, 732, 793, 841
MboII GAAGA 4 cut(s) 388, 410, 571, 878
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 6 cut(s) 16, 135, 466, 572, 594, 830
Mly113I GGCGCC 1 cut(s) 62
MlyI GAGTC 1 cut(s) 468
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 4 cut(s) 342, 402, 432, 889
MspA1I CMGCKG 2 cut(s) 67, 164
MspI CCGG 3 cut(s) 59, 83, 235
MspR9I CCNGG 4 cut(s) 59, 84, 235, 236
MvnI CGCG 2 cut(s) 67, 654
MwoI GCNNNNNNNGC 2 cut(s) 11, 73
NarI GGCGCC 1 cut(s) 62
NciI CCSGG 4 cut(s) 59, 84, 235, 236
NdeII GATC 5 cut(s) 483, 645, 732, 793, 841
NlaIII CATG 1 cut(s) 477
NlaIV GGNNCC 2 cut(s) 63, 440
NmuCI GTSAC 1 cut(s) 598
PciSI GCTCTTC 1 cut(s) 861
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 3 cut(s) 322, 355, 541
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 5 cut(s) 66, 69, 163, 166, 555
PleI GAGTC 1 cut(s) 467
PluTI GGCGCC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 63, 440
PspPI GGNCC 4 cut(s) 12, 56, 439, 848
RsaI GTAC 2 cut(s) 338, 635
RsaNI GTAC 2 cut(s) 337, 634
SacII CCGCGG 1 cut(s) 68
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 4 cut(s) 342, 402, 432, 889
SatI GCNGC 5 cut(s) 65, 68, 162, 165, 554
Sau3AI GATC 5 cut(s) 483, 645, 732, 793, 841
Sau96I GGNCC 4 cut(s) 12, 56, 439, 848
SchI GAGTC 1 cut(s) 468
ScrFI CCNGG 4 cut(s) 59, 84, 235, 236
SduI GDGCHC 1 cut(s) 414
SfaNI GCATC 2 cut(s) 265, 681
SfcI CTRYAG 1 cut(s) 423
SfoI GGCGCC 1 cut(s) 63
Sfr303I CCGCGG 1 cut(s) 68
SgrBI CCGCGG 1 cut(s) 68
SmaI CCCGGG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 6 cut(s) 16, 135, 466, 572, 594, 830
SsiI CCGC 6 cut(s) 65, 67, 164, 553, 654, 803
SspDI GGCGCC 1 cut(s) 61
SspI AATATT 1 cut(s) 753
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 4 cut(s) 57, 82, 233, 234
StyI CCWWGG 2 cut(s) 52, 639
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 1 cut(s) 635
TaqI TCGA 1 cut(s) 486
TasI AATT 6 cut(s) 16, 135, 466, 572, 594, 830
TauI GCSGC 4 cut(s) 67, 70, 167, 556
TfiI GAWTC 3 cut(s) 322, 355, 541
Tru1I TTAA 4 cut(s) 342, 402, 432, 889
Tru9I TTAA 4 cut(s) 342, 402, 432, 889
TscAI CASTG 2 cut(s) 130, 508
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 5 cut(s) 255, 347, 462, 554, 823
TspMI CCCGGG 1 cut(s) 234
TspRI CASTG 2 cut(s) 130, 508
Van91I CCANNNNNTGG 1 cut(s) 264
XapI RAATTY 1 cut(s) 830
XmaI CCCGGG 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.