Rw0G005020

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00195
OG0000205
Physical Location & Seq
Reverse (-)
29498 .. 32547
3050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005020.1

Sequence Viewer

Length: 852 bp
ATGGCAGCAACCCAAATCCCAGTAGTGGTTCTTGAATCCTCCGATGGCTACAGGACCATGCCTGTGCTTGGCTTCGGCACAGCATCCAACAATTTACAACCAGAGCTCGGTTACCGCCACTTCGACACGGCTTCCCTGTACCCCCAAGCACTCAAACTGGGCCTCGTGGCTTCTCGGGACGAGCTCTTCATCACTTCCAAGACTCTTCAATTGGAGTACCTTGATCTGTATCTGATTCACTGGCCCATCAGTGGCACGCCTGGGAAAGTGATGGAATTTCCCGAGGAGAAGGACCAAATGCCGATGGACTTCAAGGGTGTGTGGGGAGCCATGGAAGAAGCTCAGAGACTTGGCCTCACCAAATCCATTGGAATCAGTAATTTCTCTACCAAGAAGACTCAGAATATGCTCTCTTTTGCTACTATTCCTCCTTCAGTCAACCAAGTTGAGATGAGCCCATTTTGGCAACAAAAGAAGCTCAGAGACTTCTGCAAGGCCAATGGTATAGTTGTGACAGCCTTCTCCCCATTGGGTGCCATAGGAGCCAGTTGGGGTACCAATCATGTTCTCGAAAGCAAAGTGCTCAATGAAATCGCCGAGGCTCGGGGAAAGACTGTTGTTCAGGTGTGCATTAGATGGGTTTATCAGGTAGGAGCAACTCTTGCAGTGAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTCGACTGGGAACTAACAGAAGAGGATCTTGAGAAGATCAATCAAATCCCACAGCGCAAAATGATGGTTCGAGAAGAAGAGTTGGTTACGGCTACCGGACCATACAAGTCCCTTGATGAGTTATGGGATGGAGAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

283

Amino Acids

31.91

Weight (kDa)

5.42

Isoelectric Point (pI)

30.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 67 - 253 2.5e-36 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 697
Acc36I ACCTGC 1 cut(s) 697
Acc65I GGTACC 1 cut(s) 554
AccB1I GGYRCC 2 cut(s) 533, 554
AciI CCGC 1 cut(s) 115
AclWI GGATC 1 cut(s) 744
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 3 cut(s) 140, 218, 556
AfiI CCNNNNNNNGG 5 cut(s) 25, 68, 107, 251, 603
AgsI TTSAA 4 cut(s) 35, 209, 313, 694
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 5 cut(s) 106, 184, 341, 478, 675
AluI AGCT 5 cut(s) 106, 184, 341, 478, 675
Alw21I GWGCWC 3 cut(s) 108, 186, 585
Alw26I GTCTC 2 cut(s) 340, 477
AlwI GGATC 1 cut(s) 744
Ama87I CYCGRG 3 cut(s) 174, 281, 603
AoxI GGCC 4 cut(s) 160, 242, 352, 495
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 275
Asp718I GGTACC 1 cut(s) 554
AspLEI GCGC 1 cut(s) 768
AspS9I GGNCC 5 cut(s) 54, 160, 243, 292, 809
AsuHPI GGTGA 1 cut(s) 349
AvaI CYCGRG 3 cut(s) 174, 281, 603
AvaII GGWCC 3 cut(s) 54, 292, 809
BanI GGYRCC 2 cut(s) 533, 554
BanII GRGCYC 3 cut(s) 108, 186, 458
BauI CACGAG 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 3 cut(s) 108, 186, 585
BbvI GCAGC 1 cut(s) 17
BccI CCATC 7 cut(s) 38, 254, 265, 298, 630, 769, 833
BceAI ACGGC 2 cut(s) 144, 816
BciT130I CCWGG 1 cut(s) 261
BcoDI GTCTC 2 cut(s) 340, 477
BfmI CTRYAG 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 697
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 3 cut(s) 54, 292, 809
BmeT110I CYCGRG 3 cut(s) 174, 281, 603
BmgT120I GGNCC 5 cut(s) 54, 160, 243, 292, 809
BmiI GGNNCC 4 cut(s) 328, 535, 544, 556
BmrFI CCNGG 1 cut(s) 261
BmrI ACTGGG 3 cut(s) 14, 167, 727
BmsI GCATC 1 cut(s) 92
BmuI ACTGGG 3 cut(s) 14, 167, 727
BpiI GAAGAC 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 761
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 4 cut(s) 260, 282, 330, 597
BsaWI WCCGGW 1 cut(s) 806
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 68, 107, 251, 603
Bse1I ACTGG 5 cut(s) 20, 162, 245, 546, 722
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 4 cut(s) 260, 282, 330, 597
BseGI GGATG 2 cut(s) 83, 844
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 5 cut(s) 25, 68, 107, 251, 603
BseMII CTCAG 3 cut(s) 356, 413, 493
BseNI ACTGG 5 cut(s) 20, 162, 245, 546, 722
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 725
BshFI GGCC 4 cut(s) 162, 244, 354, 497
BshNI GGYRCC 2 cut(s) 533, 554
BsiHKAI GWGCWC 3 cut(s) 108, 186, 585
BsiHKCI CYCGRG 3 cut(s) 174, 281, 603
BsiSI CCGG 1 cut(s) 807
BslFI GGGAC 2 cut(s) 191, 805
BslI CCNNNNNNNGG 5 cut(s) 25, 68, 107, 251, 603
BsmAI GTCTC 2 cut(s) 340, 477
BsmFI GGGAC 2 cut(s) 191, 805
BsnI GGCC 4 cut(s) 162, 244, 354, 497
BsoBI CYCGRG 3 cut(s) 174, 281, 603
Bsp1286I GDGCHC 4 cut(s) 108, 186, 458, 585
Bsp143I GATC 3 cut(s) 223, 736, 747
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 1 cut(s) 115
BspANI GGCC 4 cut(s) 162, 244, 354, 497
BspCNI CTCAG 3 cut(s) 355, 412, 492
BspLI GGNNCC 4 cut(s) 328, 535, 544, 556
BspMI ACCTGC 1 cut(s) 697
BspPI GGATC 1 cut(s) 744
BspQI GCTCTTC 2 cut(s) 191, 665
BspT107I GGYRCC 2 cut(s) 533, 554
BsrI ACTGG 5 cut(s) 20, 162, 245, 546, 722
BssECI CCNNGG 4 cut(s) 260, 282, 330, 597
BssMI GATC 3 cut(s) 223, 736, 747
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 5 cut(s) 191, 210, 665, 726, 783
BstAPI GCANNNNNTGC 2 cut(s) 662, 703
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 3 cut(s) 342, 399, 479
BstDSI CCRYGG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 110
BstF5I GGATG 2 cut(s) 83, 844
BstHHI GCGC 1 cut(s) 768
BstKTI GATC 3 cut(s) 226, 739, 750
BstMAI GTCTC 2 cut(s) 340, 477
BstMBI GATC 3 cut(s) 223, 736, 747
BstMWI GCNNNNNNNGC 3 cut(s) 542, 662, 703
BstNI CCWGG 1 cut(s) 261
BstPI GGTNACC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BsuRI GGCC 4 cut(s) 162, 244, 354, 497
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 83, 844
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 3 cut(s) 238, 256, 672
BveI ACCTGC 1 cut(s) 697
Cac8I GCNNGC 1 cut(s) 257
CfoI GCGC 1 cut(s) 768
Cfr13I GGNCC 5 cut(s) 54, 160, 243, 292, 809
Csp6I GTAC 3 cut(s) 139, 217, 555
CviAII CATG 3 cut(s) 58, 331, 563
CviQI GTAC 3 cut(s) 139, 217, 555
DdeI CTNAG 3 cut(s) 342, 399, 479
DpnI GATC 3 cut(s) 225, 738, 749
DpnII GATC 3 cut(s) 223, 736, 747
Eam1104I CTCTTC 5 cut(s) 191, 210, 665, 726, 783
EarI CTCTTC 5 cut(s) 191, 210, 665, 726, 783
Ecl136II GAGCTC 2 cut(s) 106, 184
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 3 cut(s) 108, 186, 458
Eco47I GGWCC 3 cut(s) 54, 292, 809
Eco53kI GAGCTC 2 cut(s) 106, 184
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 3 cut(s) 174, 281, 603
Eco91I GGTNACC 1 cut(s) 110
EcoICRI GAGCTC 2 cut(s) 106, 184
EcoO65I GGTNACC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 3 cut(s) 108, 186, 458
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 3 cut(s) 61, 334, 566
FaiI YATR 8 cut(s) 59, 332, 407, 506, 539, 564, 814, 835
FalI AAGNNNNNCTT 2 cut(s) 723, 755
FaqI GGGAC 2 cut(s) 191, 805
FatI CATG 3 cut(s) 57, 330, 562
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 3 cut(s) 108, 186, 458
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 767
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 4 cut(s) 162, 244, 354, 497
HapII CCGG 1 cut(s) 807
HhaI GCGC 1 cut(s) 768
Hin1II CATG 3 cut(s) 61, 334, 566
Hin6I GCGC 1 cut(s) 766
HinP1I GCGC 1 cut(s) 766
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 5 cut(s) 35, 202, 235, 372, 397
HpaII CCGG 1 cut(s) 807
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 5 cut(s) 43, 234, 345, 402, 482
Hpy188III TCNNGA 6 cut(s) 32, 176, 281, 569, 740, 782
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 3 cut(s) 283, 441, 529
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4V TGCA 4 cut(s) 492, 630, 665, 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 662, 703
HpyF3I CTNAG 3 cut(s) 342, 399, 479
Hsp92II CATG 3 cut(s) 61, 334, 566
HspAI GCGC 1 cut(s) 766
KpnI GGTACC 1 cut(s) 558
Kzo9I GATC 3 cut(s) 223, 736, 747
LguI GCTCTTC 2 cut(s) 191, 665
LmnI GCTCC 3 cut(s) 326, 542, 653
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 92
MaeIII GTNAC 3 cut(s) 110, 511, 796
MalI GATC 3 cut(s) 225, 738, 749
MboI GATC 3 cut(s) 223, 736, 747
MboII GAAGA 9 cut(s) 178, 197, 347, 406, 682, 743, 757, 797, 800
MfeI CAATTG 1 cut(s) 209
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 4 cut(s) 108, 186, 458, 585
MluCI AATT 4 cut(s) 91, 209, 275, 379
MlyI GAGTC 2 cut(s) 196, 391
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 8 cut(s) 49, 173, 277, 365, 438, 592, 681, 727
MseI TTAA 1 cut(s) 850
MslI CAYNNNNRTG 1 cut(s) 62
MspI CCGG 1 cut(s) 807
MspR9I CCNGG 1 cut(s) 261
MunI CAATTG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 3 cut(s) 542, 662, 703
NcoI CCATGG 1 cut(s) 330
NdeII GATC 3 cut(s) 223, 736, 747
NlaIII CATG 3 cut(s) 61, 334, 566
NlaIV GGNNCC 4 cut(s) 328, 535, 544, 556
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 1 cut(s) 511
PaqCI CACCTGC 1 cut(s) 697
PciSI GCTCTTC 2 cut(s) 191, 665
PfeI GAWTC 3 cut(s) 35, 235, 372
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 196, 391
PpsI GAGTC 2 cut(s) 196, 391
Psp124BI GAGCTC 2 cut(s) 108, 186
Psp6I CCWGG 1 cut(s) 259
PspEI GGTNACC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 4 cut(s) 328, 535, 544, 556
PspPI GGNCC 5 cut(s) 54, 160, 243, 292, 809
PsuI RGATCY 1 cut(s) 736
RsaI GTAC 3 cut(s) 140, 218, 556
RsaNI GTAC 3 cut(s) 139, 217, 555
RseI CAYNNNNRTG 1 cut(s) 62
SacI GAGCTC 2 cut(s) 108, 186
SapI GCTCTTC 2 cut(s) 191, 665
SaqAI TTAA 1 cut(s) 850
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 223, 736, 747
Sau96I GGNCC 5 cut(s) 54, 160, 243, 292, 809
SchI GAGTC 2 cut(s) 196, 391
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 4 cut(s) 108, 186, 458, 585
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 49
SinI GGWCC 3 cut(s) 54, 292, 809
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
Sse9I AATT 4 cut(s) 91, 209, 275, 379
SsiI CCGC 1 cut(s) 115
SstI GAGCTC 2 cut(s) 108, 186
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 616
TaqI TCGA 4 cut(s) 123, 570, 714, 781
TasI AATT 4 cut(s) 91, 209, 275, 379
TfiI GAWTC 3 cut(s) 35, 235, 372
Tru1I TTAA 1 cut(s) 850
Tru9I TTAA 1 cut(s) 850
TscAI CASTG 3 cut(s) 245, 256, 672
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 2 cut(s) 178, 603
TspRI CASTG 3 cut(s) 245, 256, 672
VpaK11BI GGWCC 3 cut(s) 54, 292, 809
XapI RAATTY 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.