MD10G1055100.v1.1

NAD(P)H-dependent 6'-deoxychalcone synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000205
Physical Location & Seq
Reverse (-)
7513369 .. 7514907
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1055100.v1.1.491

Sequence Viewer

Length: 1002 bp
ATGGCGAATGCACCAGATGTGTCGGCAGCTGCAAACAAAATCCCCGAGGTGGTGCTGGCATCGTCGACCGGCTCGAGGAGCATGCCGGTGATTGGCTTTGGCACAGCAGCGGACAAGTTACAATCTCATGTTCTGAAAACAGCGGTTGTCGAGGCCATCAAGCTCGGTTACAGGCACTTTGATACGGCCTCTATGTACGGGTCGGAGCATACTCTGGGAGAAGCCATCCAAGAAGCACTTGGACTTGGTCTGGTTGCTTCTCGAGATCAAGTCTTCGTCACTTCAAAGTTATGGATTACTGATGCTCACCCTCATCTGGTTATTCCTGCCCTGCACAAATCACTTCAGAATCTTCAACTGAAGTACCTGGACCTGTATCTCATTCACTGGCCCATCAGTGCTAAGCCAGGAACATTGGTGTACCCACTGAATGCAGGGGACCTTATGCCCATGGACTTCAAGGCTGTGTGGGCAGCCATGGAAGAATGCCAGAGACTAGGCCTCACCAAATCCATTGGACTCAGCAACTTCTCTACCAAAAAGATTGAAAATATACTCTCTTTCGCTACGATTCCTCCTTCAGTGAATCAGGTCGAGATGAACCCGTTATGGCAACAAAAGAAGCTTAGAGACTTCTGCAAAACTAATGGTATAATTGTGACTGCCTTTTCTCCTTTGGGTGGCATAGGGTCCTGTTGGGGCAGTAATCATGTTTTTGAAAGCAAAGTTCTTCAGGAGATCGCGAAGGAACGGGGAAAGACTATAGCTCAAGTATGTATTAGATGGGTGTATCAAGCAGGGGCAACACTTGCTGTTAAGAGCTACAACAAAGAGAGGTTGAAGCAAAATGTCGACATCTTTGACTGGAAACTTTCCGAAACCGACATTGAGAAGATCAACCAAATCCCGCAGCGCAAAATGATGCTTAGAGAAGACATGGTTTCAGCGAATGGACCGTCACCATACAAGTCACTTGAAGATTTATGGGATGGAGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

334

Amino Acids

36.87

Weight (kDa)

8.22

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 31 - 302 3.8e-57 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 65, 852
AccII CGCG 1 cut(s) 743
AciI CCGC 3 cut(s) 110, 143, 908
AcuI CTGAAG 4 cut(s) 329, 380, 564, 716
AfaI GTAC 3 cut(s) 197, 365, 422
AfiI CCNNNNNNNGG 5 cut(s) 49, 75, 92, 316, 680
AgsI TTSAA 7 cut(s) 285, 356, 460, 548, 719, 841, 977
AjnI CCWGG 2 cut(s) 366, 406
AluBI AGCT 6 cut(s) 29, 163, 625, 767, 822, 997
AluI AGCT 6 cut(s) 29, 163, 625, 767, 822, 997
Alw26I GTCTC 2 cut(s) 487, 624
Ama87I CYCGRG 3 cut(s) 44, 73, 261
AoxI GGCC 4 cut(s) 153, 186, 389, 499
ApeKI GCWGC 5 cut(s) 26, 29, 107, 473, 910
ArsI GACNNNNNNTTYG 2 cut(s) 941, 973
AspLEI GCGC 1 cut(s) 915
AspS9I GGNCC 5 cut(s) 370, 390, 439, 690, 953
AsuHPI GGTGA 4 cut(s) 100, 299, 496, 951
AvaI CYCGRG 3 cut(s) 44, 73, 261
AvaII GGWCC 4 cut(s) 370, 439, 690, 953
BaeI ACNNNNGTAYC 2 cut(s) 347, 380
BbsI GAAGAC 2 cut(s) 265, 939
BbvI GCAGC 5 cut(s) 16, 38, 119, 485, 922
BccI CCATC 5 cut(s) 164, 233, 401, 777, 983
BceAI ACGGC 1 cut(s) 201
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BciT130I CCWGG 2 cut(s) 368, 408
BcoDI GTCTC 2 cut(s) 487, 624
BfaI CTAG 1 cut(s) 497
BfmI CTRYAG 1 cut(s) 762
BisI GCNGC 5 cut(s) 27, 30, 108, 474, 911
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 5 cut(s) 28, 31, 109, 475, 912
Bme1390I CCNGG 2 cut(s) 368, 408
Bme18I GGWCC 4 cut(s) 370, 439, 690, 953
BmeT110I CYCGRG 3 cut(s) 44, 73, 261
BmgT120I GGNCC 5 cut(s) 370, 390, 439, 690, 953
BmiI GGNNCC 2 cut(s) 440, 691
BmrFI CCNGG 2 cut(s) 368, 408
BmsI GCATC 3 cut(s) 68, 292, 912
BpiI GAAGAC 2 cut(s) 265, 939
Bpu1102I GCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 753
BsaJI CCNNGG 3 cut(s) 45, 450, 477
BsaXI ACNNNNNCTCC 2 cut(s) 559, 589
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 75, 92, 316, 680
Bse118I RCCGGY 2 cut(s) 68, 85
Bse1I ACTGG 2 cut(s) 392, 869
BseBI CCWGG 2 cut(s) 368, 408
BseDI CCNNGG 3 cut(s) 45, 450, 477
BseGI GGATG 2 cut(s) 225, 994
BseLI CCNNNNNNNGG 5 cut(s) 49, 75, 92, 316, 680
BseMII CTCAG 1 cut(s) 535
BseNI ACTGG 2 cut(s) 392, 869
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 5 cut(s) 16, 38, 119, 485, 922
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 743
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 4 cut(s) 155, 188, 391, 501
BsiEI CGRYCG 1 cut(s) 69
BsiHKCI CYCGRG 3 cut(s) 44, 73, 261
BsiSI CCGG 2 cut(s) 69, 86
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 5 cut(s) 49, 75, 92, 316, 680
BsmAI GTCTC 2 cut(s) 487, 624
BsmFI GGGAC 1 cut(s) 452
BsmI GAATGC 3 cut(s) 13, 436, 491
BsnI GGCC 4 cut(s) 155, 188, 391, 501
BsoBI CYCGRG 3 cut(s) 44, 73, 261
Bsp143I GATC 3 cut(s) 265, 738, 894
Bsp1720I GCTNAGC 1 cut(s) 402
Bsp19I CCATGG 2 cut(s) 450, 477
Bsp68I TCGCGA 1 cut(s) 743
BspACI CCGC 3 cut(s) 110, 143, 908
BspANI GGCC 4 cut(s) 155, 188, 391, 501
BspCNI CTCAG 1 cut(s) 534
BspFNI CGCG 1 cut(s) 743
BspLI GGNNCC 2 cut(s) 440, 691
BsrFI RCCGGY 2 cut(s) 68, 85
BsrI ACTGG 2 cut(s) 392, 869
BssAI RCCGGY 2 cut(s) 68, 85
BssECI CCNNGG 3 cut(s) 45, 450, 477
BssMI GATC 3 cut(s) 265, 738, 894
BssT1I CCWWGG 2 cut(s) 450, 477
Bst2UI CCWGG 2 cut(s) 368, 408
Bst4CI ACNGT 1 cut(s) 957
BstAPI GCANNNNNTGC 1 cut(s) 809
BstC8I GCNNGC 2 cut(s) 57, 83
BstDEI CTNAG 4 cut(s) 402, 521, 626, 926
BstDSI CCRYGG 2 cut(s) 450, 477
BstF5I GGATG 2 cut(s) 225, 994
BstFNI CGCG 1 cut(s) 743
BstHHI GCGC 1 cut(s) 915
BstKTI GATC 3 cut(s) 268, 741, 897
BstMAI GTCTC 2 cut(s) 487, 624
BstMBI GATC 3 cut(s) 265, 738, 894
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 3 cut(s) 78, 470, 809
BstNI CCWGG 2 cut(s) 368, 408
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 366, 406
BstSFI CTRYAG 1 cut(s) 762
BstUI CGCG 1 cut(s) 743
BstV1I GCAGC 5 cut(s) 16, 38, 119, 485, 922
BstV2I GAAGAC 2 cut(s) 265, 939
BsuRI GGCC 4 cut(s) 155, 188, 391, 501
BtgI CCRYGG 2 cut(s) 450, 477
BtsCI GGATG 2 cut(s) 225, 994
BtsIMutI CAGTG 4 cut(s) 385, 403, 425, 588
BtuMI TCGCGA 1 cut(s) 743
Cac8I GCNNGC 2 cut(s) 57, 83
CfoI GCGC 1 cut(s) 915
Cfr10I RCCGGY 2 cut(s) 68, 85
Cfr13I GGNCC 5 cut(s) 370, 390, 439, 690, 953
Csp6I GTAC 3 cut(s) 196, 364, 421
CviAII CATG 6 cut(s) 82, 128, 451, 478, 710, 937
CviQI GTAC 3 cut(s) 196, 364, 421
DdeI CTNAG 4 cut(s) 402, 521, 626, 926
DpnI GATC 3 cut(s) 267, 740, 896
DpnII GATC 3 cut(s) 265, 738, 894
Eco130I CCWWGG 2 cut(s) 450, 477
Eco147I AGGCCT 1 cut(s) 501
Eco47I GGWCC 4 cut(s) 370, 439, 690, 953
Eco57I CTGAAG 4 cut(s) 329, 380, 564, 716
Eco88I CYCGRG 3 cut(s) 44, 73, 261
EcoO109I RGGNCCY 2 cut(s) 439, 690
EcoRII CCWGG 2 cut(s) 366, 406
EcoT14I CCWWGG 2 cut(s) 450, 477
ErhI CCWWGG 2 cut(s) 450, 477
FaeI CATG 6 cut(s) 85, 131, 454, 481, 713, 940
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 452
FatI CATG 6 cut(s) 81, 127, 450, 477, 709, 936
FauI CCCGC 1 cut(s) 915
FblI GTMKAC 2 cut(s) 65, 852
Fnu4HI GCNGC 5 cut(s) 27, 30, 108, 474, 911
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 5 cut(s) 27, 30, 108, 474, 911
FspBI CTAG 1 cut(s) 497
GlaI GCGC 1 cut(s) 914
GluI GCNGC 5 cut(s) 27, 30, 108, 474, 911
HaeIII GGCC 4 cut(s) 155, 188, 391, 501
HapII CCGG 2 cut(s) 69, 86
HhaI GCGC 1 cut(s) 915
Hin1II CATG 6 cut(s) 85, 131, 454, 481, 713, 940
Hin6I GCGC 1 cut(s) 913
HinP1I GCGC 1 cut(s) 913
HincII GTYRAC 2 cut(s) 66, 853
HindII GTYRAC 2 cut(s) 66, 853
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 4 cut(s) 349, 519, 571, 586
HpaII CCGG 2 cut(s) 69, 86
HphI GGTGA 4 cut(s) 100, 299, 496, 951
Hpy166II GTNNAC 3 cut(s) 66, 421, 853
Hpy188I TCNGA 4 cut(s) 135, 205, 348, 877
Hpy188III TCNNGA 5 cut(s) 261, 263, 595, 734, 742
Hpy8I GTNNAC 3 cut(s) 66, 421, 853
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 588, 739
HpyCH4III ACNGT 1 cut(s) 957
HpyCH4V TGCA 5 cut(s) 11, 32, 334, 434, 639
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 470, 809
HpyF3I CTNAG 4 cut(s) 402, 521, 626, 926
Hsp92II CATG 6 cut(s) 85, 131, 454, 481, 713, 940
HspAI GCGC 1 cut(s) 913
Kzo9I GATC 3 cut(s) 265, 738, 894
LmnI GCTCC 2 cut(s) 78, 205
Lsp1109I GCAGC 5 cut(s) 16, 38, 119, 485, 922
LweI GCATC 3 cut(s) 68, 292, 912
MaeI CTAG 1 cut(s) 497
MaeIII GTNAC 6 cut(s) 117, 167, 277, 658, 957, 969
MalI GATC 3 cut(s) 267, 740, 896
MboI GATC 3 cut(s) 265, 738, 894
MboII GAAGA 7 cut(s) 265, 344, 494, 722, 904, 944, 989
MluCI AATT 1 cut(s) 654
MlyI GAGTC 1 cut(s) 513
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 8 cut(s) 40, 69, 145, 199, 321, 512, 585, 828
MseI TTAA 2 cut(s) 816, 1000
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 3 cut(s) 29, 110, 143
MspI CCGG 2 cut(s) 69, 86
MspR9I CCNGG 2 cut(s) 368, 408
Mva1269I GAATGC 3 cut(s) 13, 436, 491
MvaI CCWGG 2 cut(s) 368, 408
MvnI CGCG 1 cut(s) 743
MwoI GCNNNNNNNGC 3 cut(s) 78, 470, 809
NcoI CCATGG 2 cut(s) 450, 477
NdeII GATC 3 cut(s) 265, 738, 894
NlaIII CATG 6 cut(s) 85, 131, 454, 481, 713, 940
NlaIV GGNNCC 2 cut(s) 440, 691
NmuCI GTSAC 4 cut(s) 277, 658, 957, 969
NruI TCGCGA 1 cut(s) 743
NspI RCATGY 1 cut(s) 85
PaeI GCATGC 1 cut(s) 85
PaeR7I CTCGAG 2 cut(s) 73, 261
PceI AGGCCT 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PctI GAATGC 3 cut(s) 13, 436, 491
PfeI GAWTC 3 cut(s) 349, 571, 586
PflFI GACNNNGTC 1 cut(s) 246
PkrI GCNGC 5 cut(s) 28, 31, 109, 475, 912
PleI GAGTC 1 cut(s) 513
PpsI GAGTC 1 cut(s) 513
PpuMI RGGWCCY 2 cut(s) 439, 690
Psp5II RGGWCCY 2 cut(s) 439, 690
Psp6I CCWGG 2 cut(s) 366, 406
PspGI CCWGG 2 cut(s) 366, 406
PspN4I GGNNCC 2 cut(s) 440, 691
PspPI GGNCC 5 cut(s) 370, 390, 439, 690, 953
PspPPI RGGWCCY 2 cut(s) 439, 690
PspXI VCTCGAGB 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 29
RruI TCGCGA 1 cut(s) 743
RsaI GTAC 3 cut(s) 197, 365, 422
RsaNI GTAC 3 cut(s) 196, 364, 421
RseI CAYNNNNRTG 1 cut(s) 86
SalI GTCGAC 2 cut(s) 64, 851
SaqAI TTAA 2 cut(s) 816, 1000
SatI GCNGC 5 cut(s) 27, 30, 108, 474, 911
Sau3AI GATC 3 cut(s) 265, 738, 894
Sau96I GGNCC 5 cut(s) 370, 390, 439, 690, 953
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 2 cut(s) 368, 408
SfaNI GCATC 3 cut(s) 68, 292, 912
SfcI CTRYAG 1 cut(s) 762
Sfr274I CTCGAG 2 cut(s) 73, 261
SinI GGWCC 4 cut(s) 370, 439, 690, 953
SlaI CTCGAG 2 cut(s) 73, 261
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 3 cut(s) 73, 261, 768
SmoI CTYRAG 3 cut(s) 73, 261, 768
SphI GCATGC 1 cut(s) 85
Sse9I AATT 1 cut(s) 654
SseBI AGGCCT 1 cut(s) 501
SsiI CCGC 3 cut(s) 110, 143, 908
SspMI CTAG 1 cut(s) 497
StuI AGGCCT 1 cut(s) 501
StyD4I CCNGG 2 cut(s) 366, 406
StyI CCWWGG 2 cut(s) 450, 477
TaaI ACNGT 1 cut(s) 957
TaqI TCGA 6 cut(s) 65, 74, 150, 262, 594, 852
TasI AATT 1 cut(s) 654
TfiI GAWTC 3 cut(s) 349, 571, 586
Tru1I TTAA 2 cut(s) 816, 1000
Tru9I TTAA 2 cut(s) 816, 1000
TscAI CASTG 4 cut(s) 392, 403, 432, 588
TseFI GTSAC 4 cut(s) 277, 658, 957, 969
TseI GCWGC 5 cut(s) 26, 29, 107, 473, 910
Tsp45I GTSAC 4 cut(s) 277, 658, 957, 969
TspDTI ATGAA 1 cut(s) 614
TspRI CASTG 4 cut(s) 392, 403, 432, 588
Tth111I GACNNNGTC 1 cut(s) 246
VpaK11BI GGWCC 4 cut(s) 370, 439, 690, 953
XceI RCATGY 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XhoI CTCGAG 2 cut(s) 73, 261
XmiI GTMKAC 2 cut(s) 65, 852
XspI CTAG 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.