RLG00000005743

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000205
Physical Location & Seq
Reverse (-)
1376150 .. 1377403
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005743

Sequence Viewer

Length: 468 bp
ATGGGAAGCTTGCCAGTAGCCGAAAATGTCTCATCACGTTCCATCAACATTCCAGTGTTGCCACTGGTCTCATCATCAACTGGGAAAACAAGCAACATTCCTGTTATAGACGGAGCAGTCTCGGTGAAGCCATTTCGGAAGCTCTTTCTCTTGGCCTCATCGAATCCCCGCAAGACCTCTTCATCACTTCCAAGCTCTGGTGCAGTGATGCTCACCCCCACGGTGTCTTACCAGCCATTTGAACTACGCTCAAGTAAAATAACTAGTACTATAGGTGCAGATGAACCCGCTTTGGCCGCAGAGAAAGCTAAGAAAGTTTTGCTAGAAAAATGGTATACTAATCATGGCCTACTCTCCTTTGTGAGCAAAAGGAACACCTTTAGGGCTCAAATGGAGTCATGGAATCTGAGACGCTCAAGCAGATTGCAGATGCAAAAGGGAAAACCCTTGCCCAGGTACGTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.94

Weight (kDa)

10.7

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccB7I CCANNNNNTGG 1 cut(s) 197
AccI GTMKAC 1 cut(s) 335
AciI CCGC 3 cut(s) 169, 288, 297
AcoI YGGCCR 1 cut(s) 294
AfaI GTAC 2 cut(s) 268, 458
AfiI CCNNNNNNNGG 2 cut(s) 197, 453
AgsI TTSAA 1 cut(s) 242
AhlI ACTAGT 1 cut(s) 263
AjnI CCWGG 1 cut(s) 452
AluBI AGCT 5 cut(s) 9, 142, 195, 308, 465
AluI AGCT 5 cut(s) 9, 142, 195, 308, 465
Alw26I GTCTC 4 cut(s) 34, 73, 124, 403
AoxI GGCC 3 cut(s) 153, 294, 346
AsuHPI GGTGA 2 cut(s) 136, 205
BanII GRGCYC 1 cut(s) 388
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 454
BcoDI GTCTC 4 cut(s) 34, 73, 124, 403
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 2 cut(s) 264, 323
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 454
BmrFI CCNGG 1 cut(s) 454
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 2 cut(s) 198, 420
BmuI ACTGGG 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 235, 400
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 219, 452
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 453
Bse1I ACTGG 4 cut(s) 14, 53, 69, 85
BseBI CCWGG 1 cut(s) 454
BseDI CCNNGG 2 cut(s) 219, 452
BseLI CCNNNNNNNGG 2 cut(s) 197, 453
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 4 cut(s) 14, 53, 69, 85
BsgI GTGCAG 2 cut(s) 222, 297
BshFI GGCC 3 cut(s) 155, 296, 348
BslI CCNNNNNNNGG 2 cut(s) 197, 453
BsmAI GTCTC 4 cut(s) 34, 73, 124, 403
BsmBI CGTCTC 1 cut(s) 403
BsnI GGCC 3 cut(s) 155, 296, 348
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 388
BspACI CCGC 3 cut(s) 169, 288, 297
BspANI GGCC 3 cut(s) 155, 296, 348
BspCNI CTCAG 1 cut(s) 399
BspTNI GGTCTC 1 cut(s) 73
BsrI ACTGG 4 cut(s) 14, 53, 69, 85
BssECI CCNNGG 2 cut(s) 219, 452
BssNAI GTATAC 1 cut(s) 336
Bst1107I GTATAC 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 454
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 309, 407
BstDSI CCRYGG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 451
BstMAI GTCTC 4 cut(s) 34, 73, 124, 403
BstMWI GCNNNNNNNGC 2 cut(s) 296, 305
BstNI CCWGG 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 452
BstSFI CTRYAG 1 cut(s) 270
BstZ17I GTATAC 1 cut(s) 336
BsuRI GGCC 3 cut(s) 155, 296, 348
BtgI CCRYGG 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 3 cut(s) 60, 62, 210
Cac8I GCNNGC 1 cut(s) 11
CseI GACGC 1 cut(s) 420
Csp6I GTAC 2 cut(s) 267, 457
CviAII CATG 2 cut(s) 344, 399
CviQI GTAC 2 cut(s) 267, 457
DdeI CTNAG 2 cut(s) 309, 407
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 388
Eco31I GGTCTC 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 452
EcoT38I GRGCYC 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 403
FaeI CATG 2 cut(s) 347, 402
FaiI YATR 5 cut(s) 107, 272, 336, 345, 400
FatI CATG 2 cut(s) 343, 398
FauI CCCGC 2 cut(s) 176, 295
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 297
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 2 cut(s) 264, 323
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 3 cut(s) 155, 296, 348
HgaI GACGC 1 cut(s) 420
Hin1II CATG 2 cut(s) 347, 402
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 163, 395, 403
HphI GGTGA 2 cut(s) 136, 205
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 138, 408
Hpy8I GTNNAC 1 cut(s) 336
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 2 cut(s) 37, 459
HpyCH4V TGCA 4 cut(s) 203, 278, 427, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 305
HpyF3I CTNAG 2 cut(s) 309, 407
HpySE526I ACGT 2 cut(s) 37, 459
Hsp92II CATG 2 cut(s) 347, 402
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 8 cut(s) 27, 50, 66, 66, 114, 183, 245, 439
LweI GCATC 2 cut(s) 198, 420
MaeI CTAG 2 cut(s) 264, 323
MaeII ACGT 2 cut(s) 37, 459
MboII GAAGA 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 388
MlyI GAGTC 1 cut(s) 404
MnlI CCTC 2 cut(s) 166, 187
MslI CAYNNNNRTG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 454
MvaI CCWGG 1 cut(s) 454
MwoI GCNNNNNNNGC 2 cut(s) 296, 305
NlaIII CATG 2 cut(s) 347, 402
PfeI GAWTC 2 cut(s) 163, 403
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 452
PspGI CCWGG 1 cut(s) 452
RsaI GTAC 2 cut(s) 268, 458
RsaNI GTAC 2 cut(s) 267, 457
RseI CAYNNNNRTG 1 cut(s) 53
SatI GCNGC 1 cut(s) 297
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 454
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 2 cut(s) 198, 420
SfcI CTRYAG 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 250, 415
SmoI CTYRAG 2 cut(s) 250, 415
SpeI ACTAGT 1 cut(s) 263
SsiI CCGC 3 cut(s) 169, 288, 297
SspMI CTAG 2 cut(s) 264, 323
StyD4I CCNGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 2 cut(s) 40, 462
TaqI TCGA 1 cut(s) 161
TatI WGTACW 1 cut(s) 266
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 2 cut(s) 163, 403
TscAI CASTG 3 cut(s) 60, 69, 210
TspDTI ATGAA 2 cut(s) 171, 297
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 3 cut(s) 60, 69, 210
Van91I CCANNNNNTGG 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 335
XspI CTAG 2 cut(s) 264, 323
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.