Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000205

Physical Location & Seq

Genomic Coordinates Reverse (-)

18815065 .. 18815436

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG100400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAGAACATAAGCAATATTCCGGAGTTGGCGCTAACCGTCGTCCCAAGTAGTATTGCAAGTGATAAAAGCAGTATTCCGGTGCTAGGTTTAGGAACGGCTGCATATCCTTTTGTTGCCTCCGAAGCAGCAAAAGAAGCCATTCTCACTGCAATCCAAGTCGGCTACAGACATTTTGATACCGCTGCTGTTTACCAGACGGAGCCAGTTCTCGGTGAAGCCATTGCCGAAGCTCTTTCACTTGGCCTCGTCAAATCCCGGGATGAGCTTTTTGTTACTTCCAAGCTTTGGTGCTCGGATGCACACCATCACCTTGTCCTGCCTGCCATTCATAAAACACTCAAGTACGTATACTCAATTCATTTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009237 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016614 GO:0016616 GO:0019184 GO:0019290 GO:0019748 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033707 GO:0034224 GO:0034641 GO:0042594 GO:0043043 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044550 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0071496 GO:0071704 GO:0120127 GO:1901564 GO:1901566 GO:1901576 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

123

Amino Acids

13.26

Weight (kDa)

5.79

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	29 - 116	2.3e-13	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59950 AT1G59960
fragaria_vesca	FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica	MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica	Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis	pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis	RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata	RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora	Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii	Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa	Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha	Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana	Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	351
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	3 cut(s)	86, 212, 288
AluBI	AGCT	3 cut(s)	233, 268, 286
AluI	AGCT	3 cut(s)	233, 268, 286
Alw21I	GWGCWC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	258
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	3 cut(s)	101, 128, 185
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	34
AsuC2I	CCSGG	2 cut(s)	259, 260
AsuHPI	GGTGA	2 cut(s)	227, 302
AvaI	CYCGRG	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	3 cut(s)	88, 140, 172
BccI	CCATC	1 cut(s)	315
BceAI	ACGGC	1 cut(s)	114
BcnI	CCSGG	2 cut(s)	259, 260
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	3 cut(s)	102, 129, 186
BlsI	GCNGC	3 cut(s)	103, 130, 187
Bme1390I	CCNGG	2 cut(s)	259, 260
BmeT110I	CYCGRG	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	2 cut(s)	259, 260
BmsI	GCATC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	2 cut(s)	259, 260
BsaAI	YACGTR	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	22, 79
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 212, 288
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	222
BseAI	TCCGGA	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	268, 304
BseLI	CCNNNNNNNGG	3 cut(s)	86, 212, 288
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	88, 140, 172
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	3 cut(s)	23, 80, 259
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	3 cut(s)	86, 212, 288
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp13I	TCCGGA	1 cut(s)	22
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	246
BspEI	TCCGGA	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	258
BssNAI	GTATAC	1 cut(s)	352
Bst1107I	GTATAC	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	268, 304
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 137
BstSCI	CCNGG	2 cut(s)	257, 258
BstSFI	CTRYAG	1 cut(s)	166
BstSNI	TACGTA	1 cut(s)	349
BstV1I	GCAGC	3 cut(s)	88, 140, 172
BstZ17I	GTATAC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	268, 304
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	34
Cfr9I	CCCGGG	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	346
CviJI	RGCY	9 cut(s)	101, 140, 165, 205, 221, 233, 246, 268, 286
CviKI_1	RGCY	9 cut(s)	101, 140, 165, 205, 221, 233, 246, 268, 286
CviQI	GTAC	1 cut(s)	346
Eco105I	TACGTA	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	258
FaiI	YATR	4 cut(s)	11, 106, 333, 352
FaqI	GGGAC	1 cut(s)	29
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	102, 129, 186
FokI	GGATG	2 cut(s)	275, 311
Fsp4HI	GCNGC	3 cut(s)	102, 129, 186
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	3 cut(s)	102, 129, 186
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	3 cut(s)	23, 80, 259
HhaI	GCGC	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	284
HpaII	CCGG	3 cut(s)	23, 80, 259
HphI	GGTGA	2 cut(s)	227, 302
Hpy166II	GTNNAC	2 cut(s)	193, 352
Hpy188I	TCNGA	2 cut(s)	124, 298
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	2 cut(s)	193, 352
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	59, 104, 152, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 137
HpySE526I	ACGT	1 cut(s)	348
HspAI	GCGC	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	7 cut(s)	36, 93, 209, 219, 272, 332, 336
Lsp1109I	GCAGC	3 cut(s)	88, 140, 172
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	357, 366
MnlI	CCTC	2 cut(s)	130, 257
MroI	TCCGGA	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	3 cut(s)	23, 80, 259
MspR9I	CCNGG	2 cut(s)	259, 260
MwoI	GCNNNNNNNGC	2 cut(s)	125, 137
NciI	CCSGG	2 cut(s)	259, 260
NlaIV	GGNNCC	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	141
PflMI	CCANNNNNTGG	1 cut(s)	288
PkrI	GCNGC	3 cut(s)	103, 130, 187
Ppu21I	YACGTR	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	204
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	3 cut(s)	102, 129, 186
ScrFI	CCNGG	2 cut(s)	259, 260
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	6 cut(s)	91, 235, 270, 288, 315, 351
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	166
SmaI	CCCGGG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SnaBI	TACGTA	1 cut(s)	349
Sse9I	AATT	2 cut(s)	357, 366
SsiI	CCGC	1 cut(s)	183
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	257, 258
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	351
TasI	AATT	2 cut(s)	357, 366
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	3 cut(s)	101, 128, 185
TspDTI	ATGAA	2 cut(s)	320, 350
TspGWI	ACGGA	1 cut(s)	215
TspMI	CCCGGG	1 cut(s)	258
TspRI	CASTG	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	288
XmaI	CCCGGG	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.