Rroxscaffold_5G00340260

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000205
Physical Location & Seq
Forward (+)
8728212 .. 8729185
974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340260.1

Sequence Viewer

Length: 894 bp
ATGGCAGCAACTTATATCCCAGAGGTGGTTCTTGAATCCTCCAATGGCCGCAGGACCATGCCTGTGCTTGGCTTCGGCACAGCATCCAACAACTTACAACCAGAGGTTTTCATAGAAGCTGTTCTCGAGGCCATAAAGCTCGGTTACCGCCACTTCGACACGGCTTCCCTGTACGGCTCGGAGCAGAGTCTGGGAGTAGCCATAGCTCAAGCACTCAAACTCGGCCTCGTGGCTTCTCGAGACGAGCTCTTCATCACTTCCAAGCTTTGGTCTAATGATGCTCACCCTGATTTGTGCCACGCCTGGGATGTTGAGTCACTTTCTCGAGGAGAAGGACCAAATGCCGATGGACTTCAAGGGCGTGTGGGCAGCCATGGAAGAAGCTCAGAGACTTGGCCTCACCAAATCCATTGGAATCAGCAATTTCTCTACCAAAAGACTCAGAATTTGCTCTCTTTTGCTACTATTCCTCCTTCAGTCAATCAAGTTGAGATGAGCCCATTTTGGCAACAAAAGAAGCTTAGAGAATTCTGCAAAGCCAATGGTATAGTTGTGACTGCCTTCTCCCCATTGGGTGCCATAGGAACCAGTTGGGGTACCAATTATGTTCTCGAAAGCAAAGTGCTTAATGAAATAGCTGAGGCTCGGGGAAAGACTGTTGCTCAGGTCTGCATTAGATGGGTTTATCAGGTAGGAGCAACTCTGGCAGTGAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTTTTCGACTGGGAACTAACAGAAGAGGATCTTGAGAAGATCAATCAAATCCCACAGCGCAGAATGATAACTCGAGAAGAAGAGTTGGTTACGGCTACTGGACCATACAAGTCCCTTGATGAGTTATGGGACGGAGATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

297

Amino Acids

33.32

Weight (kDa)

5.48

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 97 4.1e-10 Aldo/keto reductase family
Aldo_ket_red PF00248 148 - 267 4.5e-19 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 739
Acc65I GGTACC 1 cut(s) 596
AccB1I GGYRCC 2 cut(s) 575, 596
AccB7I CCANNNNNTGG 1 cut(s) 267
AciI CCGC 2 cut(s) 49, 148
AclWI GGATC 1 cut(s) 786
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 445, 527
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 2 cut(s) 173, 598
AfiI CCNNNNNNNGG 4 cut(s) 25, 68, 267, 304
AgsI TTSAA 3 cut(s) 35, 356, 736
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 9 cut(s) 119, 139, 206, 247, 265, 384, 520, 638, 717
AluI AGCT 9 cut(s) 119, 139, 206, 247, 265, 384, 520, 638, 717
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 2 cut(s) 234, 383
AlwI GGATC 1 cut(s) 786
AlwNI CAGNNNCTG 1 cut(s) 190
Ama87I CYCGRG 5 cut(s) 125, 237, 324, 645, 822
AoxI GGCC 4 cut(s) 46, 129, 223, 395
ApeKI GCWGC 2 cut(s) 5, 369
ApoI RAATTY 2 cut(s) 445, 527
ArsI GACNNNNNNTTYG 2 cut(s) 430, 462
Asp700I GAANNNNTTC 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 596
AspLEI GCGC 1 cut(s) 810
AspS9I GGNCC 3 cut(s) 54, 335, 851
AsuHPI GGTGA 2 cut(s) 275, 392
AvaI CYCGRG 5 cut(s) 125, 237, 324, 645, 822
AvaII GGWCC 3 cut(s) 54, 335, 851
BanI GGYRCC 2 cut(s) 575, 596
BanII GRGCYC 2 cut(s) 249, 500
BauI CACGAG 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 2 cut(s) 17, 381
BccI CCATC 2 cut(s) 341, 672
BceAI ACGGC 3 cut(s) 177, 190, 858
BciT130I CCWGG 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 234, 383
BfuAI ACCTGC 1 cut(s) 739
BisI GCNGC 3 cut(s) 6, 49, 370
BlsI GCNGC 3 cut(s) 7, 50, 371
Bme1390I CCNGG 1 cut(s) 304
Bme18I GGWCC 3 cut(s) 54, 335, 851
BmeT110I CYCGRG 5 cut(s) 125, 237, 324, 645, 822
BmgT120I GGNCC 3 cut(s) 54, 335, 851
BmiI GGNNCC 3 cut(s) 577, 586, 598
BmrFI CCNGG 1 cut(s) 304
BmrI ACTGGG 1 cut(s) 769
BmsI GCATC 2 cut(s) 92, 268
BmuI ACTGGG 1 cut(s) 769
BplI GAGNNNNNCTC 2 cut(s) 231, 263
Bpu10I CCTNAGC 2 cut(s) 639, 663
BpuEI CTTGAG 2 cut(s) 192, 803
BsaJI CCNNGG 2 cut(s) 303, 373
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 68, 267, 304
Bse1I ACTGG 3 cut(s) 588, 764, 853
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 303, 373
BseGI GGATG 2 cut(s) 83, 313
BseLI CCNNNNNNNGG 4 cut(s) 25, 68, 267, 304
BseMII CTCAG 4 cut(s) 399, 455, 630, 677
BseNI ACTGG 3 cut(s) 588, 764, 853
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 2 cut(s) 17, 381
BsgI GTGCAG 1 cut(s) 767
BshFI GGCC 4 cut(s) 48, 131, 225, 397
BshNI GGYRCC 2 cut(s) 575, 596
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 5 cut(s) 125, 237, 324, 645, 822
BslFI GGGAC 1 cut(s) 847
BslI CCNNNNNNNGG 4 cut(s) 25, 68, 267, 304
BsmAI GTCTC 2 cut(s) 234, 383
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 847
BsnI GGCC 4 cut(s) 48, 131, 225, 397
BsoBI CYCGRG 5 cut(s) 125, 237, 324, 645, 822
Bsp1286I GDGCHC 2 cut(s) 249, 500
Bsp143I GATC 2 cut(s) 778, 789
Bsp19I CCATGG 1 cut(s) 373
BspACI CCGC 2 cut(s) 49, 148
BspANI GGCC 4 cut(s) 48, 131, 225, 397
BspCNI CTCAG 4 cut(s) 398, 454, 631, 676
BspLI GGNNCC 3 cut(s) 577, 586, 598
BspMI ACCTGC 1 cut(s) 739
BspPI GGATC 1 cut(s) 786
BspQI GCTCTTC 2 cut(s) 254, 707
BspT107I GGYRCC 2 cut(s) 575, 596
BsrI ACTGG 3 cut(s) 588, 764, 853
BssECI CCNNGG 2 cut(s) 303, 373
BssMI GATC 2 cut(s) 778, 789
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 658
Bst6I CTCTTC 4 cut(s) 254, 707, 768, 825
BstAPI GCANNNNNTGC 1 cut(s) 745
BstDEI CTNAG 5 cut(s) 385, 441, 521, 639, 663
BstDSI CCRYGG 1 cut(s) 373
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 83, 313
BstHHI GCGC 1 cut(s) 810
BstKTI GATC 2 cut(s) 781, 792
BstMAI GTCTC 2 cut(s) 234, 383
BstMBI GATC 2 cut(s) 778, 789
BstMWI GCNNNNNNNGC 2 cut(s) 704, 745
BstNI CCWGG 1 cut(s) 304
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 17, 381
BstX2I RGATCY 1 cut(s) 778
BstYI RGATCY 1 cut(s) 778
BsuRI GGCC 4 cut(s) 48, 131, 225, 397
BtgI CCRYGG 1 cut(s) 373
BtsCI GGATG 2 cut(s) 83, 313
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 1 cut(s) 714
BveI ACCTGC 1 cut(s) 739
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 1 cut(s) 810
Cfr13I GGNCC 3 cut(s) 54, 335, 851
Csp6I GTAC 2 cut(s) 172, 597
CviAII CATG 2 cut(s) 58, 374
CviQI GTAC 2 cut(s) 172, 597
DdeI CTNAG 5 cut(s) 385, 441, 521, 639, 663
DpnI GATC 2 cut(s) 780, 791
DpnII GATC 2 cut(s) 778, 789
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 4 cut(s) 254, 707, 768, 825
EarI CTCTTC 4 cut(s) 254, 707, 768, 825
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 373
Eco24I GRGCYC 2 cut(s) 249, 500
Eco47I GGWCC 3 cut(s) 54, 335, 851
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 459
Eco88I CYCGRG 5 cut(s) 125, 237, 324, 645, 822
Eco91I GGTNACC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 373
EcoT38I GRGCYC 2 cut(s) 249, 500
ErhI CCWWGG 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 2 cut(s) 61, 377
FalI AAGNNNNNCTT 2 cut(s) 765, 797
FaqI GGGAC 1 cut(s) 847
FatI CATG 2 cut(s) 57, 373
Fnu4HI GCNGC 3 cut(s) 6, 49, 370
FokI GGATG 2 cut(s) 70, 320
FriOI GRGCYC 2 cut(s) 249, 500
Fsp4HI GCNGC 3 cut(s) 6, 49, 370
GlaI GCGC 1 cut(s) 809
GluI GCNGC 3 cut(s) 6, 49, 370
HaeIII GGCC 4 cut(s) 48, 131, 225, 397
HhaI GCGC 1 cut(s) 810
Hin1II CATG 2 cut(s) 61, 377
Hin6I GCGC 1 cut(s) 808
HinP1I GCGC 1 cut(s) 808
HindIII AAGCTT 2 cut(s) 263, 518
HinfI GANTC 5 cut(s) 35, 187, 314, 415, 439
HphI GGTGA 2 cut(s) 275, 392
Hpy188I TCNGA 3 cut(s) 181, 388, 444
Hpy188III TCNNGA 8 cut(s) 32, 125, 237, 239, 324, 611, 782, 824
HpyAV CCTTC 3 cut(s) 326, 483, 571
HpyCH4III ACNGT 1 cut(s) 658
HpyCH4V TGCA 3 cut(s) 534, 672, 748
HpyF10VI GCNNNNNNNGC 2 cut(s) 704, 745
HpyF3I CTNAG 5 cut(s) 385, 441, 521, 639, 663
Hsp92II CATG 2 cut(s) 61, 377
HspAI GCGC 1 cut(s) 808
KpnI GGTACC 1 cut(s) 600
Kzo9I GATC 2 cut(s) 778, 789
LguI GCTCTTC 2 cut(s) 254, 707
LmnI GCTCC 2 cut(s) 181, 695
Lsp1109I GCAGC 2 cut(s) 17, 381
LweI GCATC 2 cut(s) 92, 268
MaeIII GTNAC 4 cut(s) 143, 315, 553, 838
MalI GATC 2 cut(s) 780, 791
MboI GATC 2 cut(s) 778, 789
MboII GAAGA 7 cut(s) 241, 390, 724, 785, 799, 839, 842
MflI RGATCY 1 cut(s) 778
MhlI GDGCHC 2 cut(s) 249, 500
MluCI AATT 4 cut(s) 422, 445, 527, 601
MlyI GAGTC 3 cut(s) 196, 323, 433
MmeI TCCRAC 1 cut(s) 111
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 2 cut(s) 627, 892
MslI CAYNNNNRTG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 2 cut(s) 704, 745
NcoI CCATGG 1 cut(s) 373
NdeII GATC 2 cut(s) 778, 789
NlaIII CATG 2 cut(s) 61, 377
NlaIV GGNNCC 3 cut(s) 577, 586, 598
NmeAIII GCCGAG 1 cut(s) 201
NmuCI GTSAC 2 cut(s) 315, 553
PaeR7I CTCGAG 4 cut(s) 125, 237, 324, 822
PciSI GCTCTTC 2 cut(s) 254, 707
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 35, 415
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 3 cut(s) 7, 50, 371
PleI GAGTC 3 cut(s) 195, 322, 433
PpsI GAGTC 3 cut(s) 195, 322, 433
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 302
PspEI GGTNACC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 3 cut(s) 577, 586, 598
PspPI GGNCC 3 cut(s) 54, 335, 851
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 778
RsaI GTAC 2 cut(s) 173, 598
RsaNI GTAC 2 cut(s) 172, 597
RseI CAYNNNNRTG 1 cut(s) 62
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 2 cut(s) 254, 707
SaqAI TTAA 2 cut(s) 627, 892
SatI GCNGC 3 cut(s) 6, 49, 370
Sau3AI GATC 2 cut(s) 778, 789
Sau96I GGNCC 3 cut(s) 54, 335, 851
SchI GAGTC 3 cut(s) 196, 323, 433
ScrFI CCNGG 1 cut(s) 304
SduI GDGCHC 2 cut(s) 249, 500
SfaNI GCATC 2 cut(s) 92, 268
Sfr274I CTCGAG 4 cut(s) 125, 237, 324, 822
SinI GGWCC 3 cut(s) 54, 335, 851
SlaI CTCGAG 4 cut(s) 125, 237, 324, 822
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 6 cut(s) 125, 207, 237, 324, 782, 822
SmoI CTYRAG 6 cut(s) 125, 207, 237, 324, 782, 822
Sse9I AATT 4 cut(s) 422, 445, 527, 601
SsiI CCGC 2 cut(s) 49, 148
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 302
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 658
TaqI TCGA 7 cut(s) 126, 156, 238, 325, 612, 756, 823
TasI AATT 4 cut(s) 422, 445, 527, 601
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 2 cut(s) 35, 415
Tru1I TTAA 2 cut(s) 627, 892
Tru9I TTAA 2 cut(s) 627, 892
TscAI CASTG 1 cut(s) 714
TseFI GTSAC 2 cut(s) 315, 553
TseI GCWGC 2 cut(s) 5, 369
Tsp45I GTSAC 2 cut(s) 315, 553
TspDTI ATGAA 3 cut(s) 100, 241, 645
TspRI CASTG 1 cut(s) 714
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 3 cut(s) 54, 335, 851
XapI RAATTY 2 cut(s) 445, 527
XhoI CTCGAG 4 cut(s) 125, 237, 324, 822
XmnI GAANNNNTTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.