Rh5CG182600

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000205
Physical Location & Seq
Reverse (-)
18204772 .. 18206574
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG182600.1

Sequence Viewer

Length: 654 bp
ATGACTCTTCAATTGGAGTACCTTGATCTGTATCTGATTCACTGGCCCATCAGTGGCACGCCTGGGAAAGTGATGGAATTTCCCGAGGAGAAGGACCAAATGCCGATGGACTTCAAGGGTGTGTGGGGAGCCATGGAAGAAGCTCAGAGACTTGGCCTCACCAAATCCATTGGAATCAGTAATTTCTCTACCAAGAAGACTCAGAATATGCTCTCTTTTGCTACTATTCCTCCTTCAGTCAACCAAGTTGAGATGAGCCCATTTTGGCAACAAAAGAAGCTCAGAGACTTCTGCAAGGCCAACGGTATAGTTGTGACTGCCTTCCCCCCATTGGGTGCCATAGGAGCCAGTTGGGGTACCAATCATGTTCTCGAAAGCAAAGTGCTCAATGAAATCGCCGAGGCTCGGGGAAAGACTGTTGTTCAGGTGTGCATTAGATGGGTTTATCAGGTAGGAGCAACTCTTGCAGTGAAGAGCTACAACAAGGAGAGGTTGAAGCAGAATGTGCAGGTGTTCGACTGGGAACTAACAGAAGAGGATCTTGAGAAGATCAATCAAATCCCACAGCGCAAAATGATGGTTCGAGAAGAAGAGTTGGTTACGGCTACCGGACCATACGAGTCCCTTGATGAGTTATGGGATGGAGAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

217

Amino Acids

24.78

Weight (kDa)

5.13

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 2 - 187 5.6e-35 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G59950 AT1G59960
fragaria_vesca FvH4_2g01280 FvH4_3g20300 FvH4_3g20300 FvH4_4g25591 FvH4_4g25600 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25610 FvH4_4g25612 FvH4_4g25612 FvH4_4g25620 FvH4_4g35840
malus_domestica MD04G1063200.v1.1 MD10G1055100.v1.1 MD13G1014700.v1.1 MD13G1101200.v1.1 MD16G1101500.v1.1
prunus_persica Prupe.1G244700_v2.0.a1 Prupe.1G245100_v2.0.a1 Prupe.1G245400_v2.0.a1 Prupe.1G338900_v2.0.a1 Prupe.5G239400_v2.0.a1
pyrus_communis pycom13g08830 pycom16g01150 pycom16g08620
rosa_chinensis RchiOBHm_Chr1g0329311 RchiOBHm_Chr3g0483001 RchiOBHm_Chr4g0395321 RchiOBHm_Chr4g0433021 RchiOBHm_Chr4g0445371 RchiOBHm_Chr4g0445381 RchiOBHm_Chr4g0445421 RchiOBHm_Chr5g0023771 RchiOBHm_Chr5g0023781 RchiOBHm_Chr5g0068101 RchiOBHm_Chr5g0068111 RchiOBHm_Chr6g0281251 RchiOBHm_Chr7g0225361
rosa_laevigata RLG00000001827 RLG00000005742 RLG00000005743 RLG00000005744 RLG00000006791 RLG00000009629 RLG00000012981 RLG00000023308 RLG00000029902 RLG00000032738 RLG00000032739 RLG00000035956 RLG00000035957
rosa_multiflora Rmu_co7982306.1_g000001 Rmu_co8108716.1_g000001 Rmu_co8139310.1_g000001 Rmu_co8479199.1_g000001 Rmu_sc0000050.1_g000005 Rmu_sc0000050.1_g000006 Rmu_sc0000847.1_g000048 Rmu_sc0001372.1_g000008 Rmu_sc0001762.1_g000035 Rmu_sc0002791.1_g000001 Rmu_sc0002791.1_g000002 Rmu_sc0002791.1_g000005 Rmu_sc0003252.1_g000001 Rmu_sc0003351.1_g000013 Rmu_sc0006184.1_g000008 Rmu_sc0009518.1_g000006 Rmu_sc0010817.1_g000030 Rmu_sc0016867.1_g000002 Rmu_ssc0000027.1_g000010
rosa_roxburghii Rroxscaffold_1G00012480 Rroxscaffold_1G00012490 Rroxscaffold_1G00013240 Rroxscaffold_1G00013250 Rroxscaffold_1G00055410 Rroxscaffold_1G00055420 Rroxscaffold_3G00233890 Rroxscaffold_4G00321220 Rroxscaffold_5G00340230 Rroxscaffold_5G00340260 Rroxscaffold_6G00398750 Rroxscaffold_7G00187200
rosa_rugosa Rorug01G0078500 Rorug03G0202900 Rorug03G0358000 Rorug04G0361100 Rorug04G0361200 Rorug05G0079600 Rorug06G0140100 Rorug07G0228800
rosa_samantha Rh1AG096900 Rh1BG077500 Rh1CG093800 Rh1DG100300 Rh1DG100400 Rh4AG058500 Rh4AG318800 Rh4AG422300 Rh4AG422400 Rh4BG057300 Rh4BG326900 Rh4BG327000 Rh4BG434300 Rh4BG434600 Rh4CG063100 Rh4CG342300 Rh4CG342400 Rh4CG449100 Rh4CG449200 Rh4CG449300 Rh4CG449500 Rh4DG054000 Rh4DG054100 Rh4DG322100 Rh4DG430300 Rh4DG430400 Rh4DG430800 Rh5AG446700 Rh5AG446800 Rh5BG167000 Rh5BG465000 Rh5CG182600 Rh5DG168900 Rh5DG169000 Rh5DG478700 Rh6AG251900 Rh6BG255300 Rh6CG254700 Rh6DG246500 Rh7AG374400 Rh7BG363700 Rh7CG392700 Rh7CG392800 Rh7DG374500 Rh7DG374600
rosa_wichuraiana Rw0G001550 Rw0G005020 Rw1G007510 Rw1G007530 Rw1G007570 Rw3G022750 Rw4G004710 Rw4G027720 Rw4G036230 Rw4G036240 Rw5G015340 Rw6G021880 Rw7G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 499
Acc36I ACCTGC 1 cut(s) 499
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 2 cut(s) 335, 356
AclWI GGATC 1 cut(s) 546
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 2 cut(s) 20, 358
AfiI CCNNNNNNNGG 4 cut(s) 53, 331, 332, 405
AgsI TTSAA 3 cut(s) 11, 115, 496
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 3 cut(s) 143, 280, 477
AluI AGCT 3 cut(s) 143, 280, 477
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 2 cut(s) 142, 279
AlwI GGATC 1 cut(s) 546
Ama87I CYCGRG 2 cut(s) 83, 405
AoxI GGCC 3 cut(s) 44, 154, 297
ApoI RAATTY 1 cut(s) 77
Asp718I GGTACC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 3 cut(s) 45, 94, 611
AsuHPI GGTGA 1 cut(s) 151
AvaI CYCGRG 2 cut(s) 83, 405
AvaII GGWCC 2 cut(s) 94, 611
BanI GGYRCC 2 cut(s) 335, 356
BanII GRGCYC 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 387
BccI CCATC 6 cut(s) 56, 67, 100, 432, 571, 635
BceAI ACGGC 1 cut(s) 618
BciT130I CCWGG 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 142, 279
BfuAI ACCTGC 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 2 cut(s) 94, 611
BmeT110I CYCGRG 2 cut(s) 83, 405
BmgT120I GGNCC 3 cut(s) 45, 94, 611
BmiI GGNNCC 4 cut(s) 130, 337, 346, 358
BmrFI CCNGG 1 cut(s) 63
BmrI ACTGGG 1 cut(s) 529
BmuI ACTGGG 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 563
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 62, 84, 132, 399
BsaWI WCCGGW 1 cut(s) 608
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 331, 332, 405
Bse1I ACTGG 3 cut(s) 47, 348, 524
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 4 cut(s) 62, 84, 132, 399
BseGI GGATG 1 cut(s) 646
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 4 cut(s) 53, 331, 332, 405
BseMII CTCAG 3 cut(s) 158, 215, 295
BseNI ACTGG 3 cut(s) 47, 348, 524
BseRI GAGGAG 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 527
BshFI GGCC 3 cut(s) 46, 156, 299
BshNI GGYRCC 2 cut(s) 335, 356
BsiHKAI GWGCWC 1 cut(s) 387
BsiHKCI CYCGRG 2 cut(s) 83, 405
BsiSI CCGG 1 cut(s) 609
BslFI GGGAC 1 cut(s) 607
BslI CCNNNNNNNGG 4 cut(s) 53, 331, 332, 405
BsmAI GTCTC 2 cut(s) 142, 279
BsmFI GGGAC 1 cut(s) 607
BsnI GGCC 3 cut(s) 46, 156, 299
BsoBI CYCGRG 2 cut(s) 83, 405
Bsp1286I GDGCHC 2 cut(s) 260, 387
Bsp143I GATC 3 cut(s) 25, 538, 549
Bsp19I CCATGG 1 cut(s) 132
BspANI GGCC 3 cut(s) 46, 156, 299
BspCNI CTCAG 3 cut(s) 157, 214, 294
BspLI GGNNCC 4 cut(s) 130, 337, 346, 358
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 1 cut(s) 546
BspQI GCTCTTC 1 cut(s) 467
BspT107I GGYRCC 2 cut(s) 335, 356
BsrI ACTGG 3 cut(s) 47, 348, 524
BssECI CCNNGG 4 cut(s) 62, 84, 132, 399
BssMI GATC 3 cut(s) 25, 538, 549
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 305, 418
Bst6I CTCTTC 4 cut(s) 12, 467, 528, 585
BstAPI GCANNNNNTGC 2 cut(s) 464, 505
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 3 cut(s) 144, 201, 281
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 646
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 3 cut(s) 28, 541, 552
BstMAI GTCTC 2 cut(s) 142, 279
BstMBI GATC 3 cut(s) 25, 538, 549
BstMWI GCNNNNNNNGC 3 cut(s) 344, 464, 505
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 3 cut(s) 46, 156, 299
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 646
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 3 cut(s) 40, 58, 474
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 570
Cfr13I GGNCC 3 cut(s) 45, 94, 611
Csp6I GTAC 2 cut(s) 19, 357
CviAII CATG 2 cut(s) 133, 365
CviQI GTAC 2 cut(s) 19, 357
DdeI CTNAG 3 cut(s) 144, 201, 281
DpnI GATC 3 cut(s) 27, 540, 551
DpnII GATC 3 cut(s) 25, 538, 549
Eam1104I CTCTTC 4 cut(s) 12, 467, 528, 585
EarI CTCTTC 4 cut(s) 12, 467, 528, 585
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 94, 611
Eco57I CTGAAG 1 cut(s) 219
Eco88I CYCGRG 2 cut(s) 83, 405
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 136, 368
FaiI YATR 7 cut(s) 134, 209, 308, 341, 366, 616, 637
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FaqI GGGAC 1 cut(s) 607
FatI CATG 2 cut(s) 132, 364
FriOI GRGCYC 1 cut(s) 260
GlaI GCGC 1 cut(s) 569
HaeIII GGCC 3 cut(s) 46, 156, 299
HapII CCGG 1 cut(s) 609
HhaI GCGC 1 cut(s) 570
Hin1II CATG 2 cut(s) 136, 368
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 5 cut(s) 4, 37, 174, 199, 620
HpaII CCGG 1 cut(s) 609
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 4 cut(s) 36, 147, 204, 284
Hpy188III TCNNGA 4 cut(s) 83, 371, 542, 584
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 3 cut(s) 85, 243, 331
HpyCH4III ACNGT 2 cut(s) 305, 418
HpyCH4V TGCA 4 cut(s) 294, 432, 467, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 464, 505
HpyF3I CTNAG 3 cut(s) 144, 201, 281
Hsp92II CATG 2 cut(s) 136, 368
HspAI GCGC 1 cut(s) 568
KpnI GGTACC 1 cut(s) 360
Kzo9I GATC 3 cut(s) 25, 538, 549
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 3 cut(s) 128, 344, 455
LpnPI CCDG 9 cut(s) 28, 48, 75, 361, 410, 434, 494, 505, 622
MaeIII GTNAC 2 cut(s) 313, 598
MalI GATC 3 cut(s) 27, 540, 551
MboI GATC 3 cut(s) 25, 538, 549
MboII GAAGA 7 cut(s) 149, 208, 484, 545, 559, 599, 602
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 260, 387
MluCI AATT 3 cut(s) 11, 77, 181
MlyI GAGTC 2 cut(s) 193, 629
MnlI CCTC 6 cut(s) 79, 167, 240, 394, 483, 529
MseI TTAA 1 cut(s) 652
MspI CCGG 1 cut(s) 609
MspR9I CCNGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 3 cut(s) 344, 464, 505
NcoI CCATGG 1 cut(s) 132
NdeII GATC 3 cut(s) 25, 538, 549
NlaIII CATG 2 cut(s) 136, 368
NlaIV GGNNCC 4 cut(s) 130, 337, 346, 358
NmeAIII GCCGAG 1 cut(s) 424
NmuCI GTSAC 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 499
PciSI GCTCTTC 1 cut(s) 467
PfeI GAWTC 2 cut(s) 37, 174
PleI GAGTC 2 cut(s) 193, 628
PpsI GAGTC 2 cut(s) 193, 628
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 4 cut(s) 130, 337, 346, 358
PspPI GGNCC 3 cut(s) 45, 94, 611
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 2 cut(s) 20, 358
RsaNI GTAC 2 cut(s) 19, 357
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 1 cut(s) 652
Sau3AI GATC 3 cut(s) 25, 538, 549
Sau96I GGNCC 3 cut(s) 45, 94, 611
SchI GAGTC 2 cut(s) 193, 629
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 2 cut(s) 260, 387
SetI ASST 8 cut(s) 24, 145, 282, 429, 453, 479, 494, 513
SinI GGWCC 2 cut(s) 94, 611
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 3 cut(s) 11, 77, 181
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 305, 418
TaqI TCGA 3 cut(s) 372, 516, 583
TasI AATT 3 cut(s) 11, 77, 181
TfiI GAWTC 2 cut(s) 37, 174
Tru1I TTAA 1 cut(s) 652
Tru9I TTAA 1 cut(s) 652
TscAI CASTG 3 cut(s) 47, 58, 474
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 405
TspRI CASTG 3 cut(s) 47, 58, 474
VpaK11BI GGWCC 2 cut(s) 94, 611
XapI RAATTY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.