pycom14g02380

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000241
Physical Location & Seq
Forward (+)
1855437 .. 1855819
383 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGAGTATTCGGAGCTTTTCTGATGAGCTCGTTCCTGCAGTGGTCTTTCTTTTAAGAGGAATGCCCAATTTGTGTACTTTATACATAGGTGAACAACCAAGGCTTAGTGATCCTGAATCTGATGCATCTGGGTTTGATATGGAATACTGGAAGTTACAAAATCTGGATTTTATTCATCACATTGAGGAGGTTACCGTAGATCTTTTCGATGGGTCTAATGGGATTGTGTTTGCAAGGTATATAATCGAGAATGCCAAGAACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

89

Amino Acids

10.05

Weight (kDa)

4.39

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 104
AfaI GTAC 1 cut(s) 76
AluBI AGCT 2 cut(s) 15, 28
AluI AGCT 2 cut(s) 15, 28
Alw21I GWGCWC 1 cut(s) 30
AlwI GGATC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 101
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BccI CCATC 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 36
BglII AGATCT 1 cut(s) 199
BmsI GCATC 2 cut(s) 112, 134
BsaJI CCNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 30
BsmI GAATGC 2 cut(s) 66, 256
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 109, 199
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 2 cut(s) 109, 199
BssT1I CCWWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 104
BstEII GGTNACC 1 cut(s) 190
BstKTI GATC 2 cut(s) 112, 202
BstMBI GATC 2 cut(s) 109, 199
BstPI GGTNACC 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
Csp6I GTAC 1 cut(s) 75
CviJI RGCY 3 cut(s) 15, 28, 103
CviKI_1 RGCY 3 cut(s) 15, 28, 103
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 1 cut(s) 104
DpnI GATC 2 cut(s) 111, 201
DpnII GATC 2 cut(s) 109, 199
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 28
Eco91I GGTNACC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 98
FaiI YATR 6 cut(s) 82, 86, 140, 240, 242, 265
FriOI GRGCYC 1 cut(s) 30
HinfI GANTC 1 cut(s) 116
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 2 cut(s) 75, 92
Hpy188I TCNGA 3 cut(s) 12, 22, 121
Hpy188III TCNNGA 3 cut(s) 113, 164, 247
Hpy8I GTNNAC 2 cut(s) 75, 92
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 38, 125, 233
HpyF3I CTNAG 1 cut(s) 104
Kzo9I GATC 2 cut(s) 109, 199
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 5 cut(s) 48, 114, 126, 133, 149
LweI GCATC 2 cut(s) 112, 134
MaeIII GTNAC 2 cut(s) 153, 190
MalI GATC 2 cut(s) 111, 201
MboI GATC 2 cut(s) 109, 199
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 1 cut(s) 67
MnlI CCTC 3 cut(s) 50, 178, 181
Mph1103I ATGCAT 1 cut(s) 127
MseI TTAA 1 cut(s) 53
Mva1269I GAATGC 2 cut(s) 66, 256
NdeII GATC 2 cut(s) 109, 199
NsiI ATGCAT 1 cut(s) 127
PctI GAATGC 2 cut(s) 66, 256
PfeI GAWTC 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 30
PspEI GGTNACC 1 cut(s) 190
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 53
Sau3AI GATC 2 cut(s) 109, 199
SduI GDGCHC 1 cut(s) 30
SetI ASST 6 cut(s) 17, 30, 91, 192, 239, 264
SfaNI GCATC 2 cut(s) 112, 134
SfcI CTRYAG 1 cut(s) 36
SgeI CNNG 9 cut(s) 41, 47, 111, 125, 141, 160, 176, 246, 259
Sse9I AATT 1 cut(s) 67
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 207, 246
TasI AATT 1 cut(s) 67
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 1 cut(s) 45
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.