pycom14g02470

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000241
Physical Location & Seq
Forward (+)
1942254 .. 1944819
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1509 bp
ATGGCTTCTGCAAGTCGTCGAGGTGAAGGAATTTGTAGTGGGCGTGAAAGTGAGAGTATGAAAGATGTATTTAGTAACCTTCCAGACCAGATTTCCCATCACATTCTTTGCCTACTTGCTGTAACCGACCTCGCTCGTTTCGGTTGTGTGTCCAAAAGATGCAGAGAACTTTGCCTGTCATCTCCCAAGTTGAATTTGGATGAATTTTCCTTGGTGAATACGTCTACTTGTTATAAGCGGCTCGAATTGTTTACCTATTTGGATAGGTTCTTTTTCCACCGTGGTGATAATAAGATACAAAGCTTCCGCCTTCGTTGGTATAGGCATGATGTATGTGAGGGTGAAGATGAAGAAGCACAATGCGTCTGTGATTGTTGTGCGAGTTTCAGACTGTTTACATGGATTGAAAATGCAGTAAGGTGTAATGTTGAAGTGCTTGATCTGGTGATGAATTATCAGGATGAGGAGGAACGGTTTCTGTTTCCTGCTAGTGTCTTTTTGTGTGGAACTTTGAGGCATCTAATACTGCACCTGAACTGTACGGTTCTTAAGACTCCATCGTTCGCTTTTCAATCTAATCTCAAGATCTTGGAGTTGAAAAATGTTGATATAGATGATGGTGGTGGATTTTTCAAATGGATCTCGTGTTGCTGTAAATTCATTGAGGAATTAAGCCTTGAACACGTTTGTGTGACACAAGAAATTACTGTTGAAAGCTTGTCTCTGAAAATACTTAACTGTTCTGGTATCTTTCTGATTGATAAATGTCATATTAACATCTCATGTGAGAAGCTTGAGTACATACGTATTTGCTGGGTATTGGACTCACCGAGAAACAAATCCTTAAATATGTTTGCCCCAAATCTGAAGTCTTTCAAATGGTTCGGGAGTTTGATGAATCACTCAAATTTGGGAAAATTAGAATGCTTAGAAGTAGCTTCATTTTTCTTGGAGCCAACATTGGATATCTTGGACAATATAGTCGAGGTTCTTCACAGTTTATGCAGGGCTAAACTTTTTATGCTAAATGAAGCGACTATTAAGGCTCTTCCATTGAAGGAATTATCATCTAGGCCAGCTCCACTATGTGATACTAGTTCTTTGTGTATCGAAATTGGAAGCTTTATTGATGAGCTGATCCCAGCAATGGTCTATCTCTTTAGAGCAATGCCTAAGCTTTGTACTTTATGCATAATGTTGAATCCGCCCTCTGGTGACCCTAACTCTAATGCATCGGGGATTAGCATGGAATACTGGAAGTTGCAAAACCTCGCGTTTGTTTATCAGCTCAAGCACGTTGCTATAGAGCTTTGCCACGGGTCTAATGGAATGGAGTTAGCAAGGTACATTATCGAGTATGCTCAGAATTTGCAAAAGATGGTAATAGTTTATTCTTCCCAGGACTTGGAAAAAATTACAAGGGAGTTAGAGAAAAGCAAGATGATTCCCAATGCGACAATTGACTTCCAGGAAAGATCAATCAAGAGTTCCCTCTCTTCTTCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

503

Amino Acids

57.29

Weight (kDa)

5.73

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 63 4.4e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AasI GACNNNNNNGTC 1 cut(s) 980
AccB7I CCANNNNNTGG 1 cut(s) 1405
AccI GTMKAC 1 cut(s) 224
AccII CGCG 1 cut(s) 1274
AciI CCGC 3 cut(s) 238, 307, 1205
AclWI GGATC 2 cut(s) 647, 1132
AcsI RAATTY 6 cut(s) 30, 193, 203, 656, 907, 1366
AcuI CTGAAG 1 cut(s) 887
AdeI CACNNNGTG 1 cut(s) 1088
AfaI GTAC 4 cut(s) 541, 800, 1183, 1346
AfiI CCNNNNNNNGG 3 cut(s) 1147, 1211, 1405
AflII CTTAAG 1 cut(s) 548
AflIII ACRYGT 1 cut(s) 682
AhlI ACTAGT 1 cut(s) 1094
AjnI CCWGG 2 cut(s) 1398, 1467
AleI CACNNNNGTG 2 cut(s) 282, 687
Alw26I GTCTC 1 cut(s) 726
AlwI GGATC 2 cut(s) 647, 1132
AoxI GGCC 1 cut(s) 1073
ApoI RAATTY 6 cut(s) 30, 193, 203, 656, 907, 1366
ArsI GACNNNNNNTTYG 2 cut(s) 854, 886
Asp700I GAANNNNTTC 2 cut(s) 474, 872
AsuHPI GGTGA 7 cut(s) 35, 226, 296, 353, 457, 819, 1226
BarI GAAGNNNNNNTAC 2 cut(s) 782, 814
BauI CACGAG 1 cut(s) 643
BccI CCATC 4 cut(s) 105, 565, 611, 1372
BciT130I CCWGG 2 cut(s) 1400, 1469
BcoDI GTCTC 1 cut(s) 726
BcuI ACTAGT 1 cut(s) 1094
BfaI CTAG 3 cut(s) 489, 1071, 1095
BfmI CTRYAG 1 cut(s) 1302
BfrI CTTAAG 1 cut(s) 548
BglII AGATCT 1 cut(s) 585
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
Bme1390I CCNGG 2 cut(s) 1400, 1469
BmiI GGNNCC 1 cut(s) 954
BmrFI CCNGG 2 cut(s) 1400, 1469
BmsI GCATC 3 cut(s) 149, 526, 1241
Bpu10I CCTNAGC 1 cut(s) 1173
BpuEI CTTGAG 3 cut(s) 566, 815, 1274
BsaAI YACGTR 1 cut(s) 806
BsaJI CCNNGG 4 cut(s) 210, 280, 1315, 1398
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 3 cut(s) 1147, 1211, 1405
Bse1I ACTGG 1 cut(s) 1259
Bse3DI GCAATG 2 cut(s) 1152, 1173
BseBI CCWGG 2 cut(s) 1400, 1469
BseDI CCNNGG 4 cut(s) 210, 280, 1315, 1398
BseGI GGATG 2 cut(s) 205, 466
BseLI CCNNNNNNNGG 3 cut(s) 1147, 1211, 1405
BseMI GCAATG 2 cut(s) 1152, 1173
BseMII CTCAG 1 cut(s) 1376
BseNI ACTGG 1 cut(s) 1259
BseRI GAGGAG 1 cut(s) 479
BseYI CCCAGC 2 cut(s) 813, 1141
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 1274
BshFI GGCC 1 cut(s) 1075
BslI CCNNNNNNNGG 3 cut(s) 1147, 1211, 1405
BsmAI GTCTC 1 cut(s) 726
BsmI GAATGC 1 cut(s) 929
BsnI GGCC 1 cut(s) 1075
Bsp143I GATC 5 cut(s) 439, 585, 639, 1137, 1475
BspACI CCGC 3 cut(s) 238, 307, 1205
BspANI GGCC 1 cut(s) 1075
BspCNI CTCAG 1 cut(s) 1375
BspFNI CGCG 1 cut(s) 1274
BspLI GGNNCC 1 cut(s) 954
BspPI GGATC 2 cut(s) 647, 1132
BspQI GCTCTTC 1 cut(s) 1053
BspTI CTTAAG 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 1152, 1173
BsrI ACTGG 1 cut(s) 1259
BssECI CCNNGG 4 cut(s) 210, 280, 1315, 1398
BssMI GATC 5 cut(s) 439, 585, 639, 1137, 1475
BssSI CACGAG 1 cut(s) 643
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 643
Bst2UI CCWGG 2 cut(s) 1400, 1469
Bst4CI ACNGT 8 cut(s) 281, 393, 474, 539, 544, 709, 740, 998
Bst6I CTCTTC 2 cut(s) 1053, 1501
BstAFI CTTAAG 1 cut(s) 548
BstBAI YACGTR 1 cut(s) 806
BstC8I GCNNGC 1 cut(s) 1077
BstDEI CTNAG 3 cut(s) 928, 1173, 1362
BstDSI CCRYGG 2 cut(s) 280, 1315
BstEII GGTNACC 1 cut(s) 1214
BstF5I GGATG 2 cut(s) 205, 466
BstFNI CGCG 1 cut(s) 1274
BstKTI GATC 5 cut(s) 442, 588, 642, 1140, 1478
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 5 cut(s) 439, 585, 639, 1137, 1475
BstNI CCWGG 2 cut(s) 1400, 1469
BstPI GGTNACC 1 cut(s) 1214
BstSCI CCNGG 2 cut(s) 1398, 1467
BstSFI CTRYAG 1 cut(s) 1302
BstSNI TACGTA 1 cut(s) 806
BstUI CGCG 1 cut(s) 1274
BstX2I RGATCY 2 cut(s) 585, 639
BstYI RGATCY 2 cut(s) 585, 639
BsuRI GGCC 1 cut(s) 1075
BtgI CCRYGG 2 cut(s) 280, 1315
BtsCI GGATG 2 cut(s) 205, 466
Cac8I GCNNGC 1 cut(s) 1077
CseI GACGC 1 cut(s) 352
Csp6I GTAC 4 cut(s) 540, 799, 1182, 1345
CviAII CATG 4 cut(s) 326, 399, 783, 1246
CviQI GTAC 4 cut(s) 540, 799, 1182, 1345
DdeI CTNAG 3 cut(s) 928, 1173, 1362
DpnI GATC 5 cut(s) 441, 587, 641, 1139, 1477
DpnII GATC 5 cut(s) 439, 585, 639, 1137, 1475
DraIII CACNNNGTG 1 cut(s) 1088
DrdI GACNNNNNNGTC 1 cut(s) 980
DseDI GACNNNNNNGTC 1 cut(s) 980
Eam1104I CTCTTC 2 cut(s) 1053, 1501
EarI CTCTTC 2 cut(s) 1053, 1501
EciI GGCGGA 2 cut(s) 296, 1194
Eco105I TACGTA 1 cut(s) 806
Eco130I CCWWGG 1 cut(s) 210
Eco32I GATATC 1 cut(s) 967
Eco57I CTGAAG 1 cut(s) 887
Eco91I GGTNACC 1 cut(s) 1214
EcoO65I GGTNACC 1 cut(s) 1214
EcoRII CCWGG 2 cut(s) 1398, 1467
EcoRV GATATC 1 cut(s) 967
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 2 cut(s) 1193, 1234
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 4 cut(s) 329, 402, 786, 1249
FatI CATG 4 cut(s) 325, 398, 782, 1245
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 2 cut(s) 212, 473
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 3 cut(s) 489, 1071, 1095
GluI GCNGC 1 cut(s) 239
GsaI CCCAGC 2 cut(s) 817, 1145
HaeIII GGCC 1 cut(s) 1075
HgaI GACGC 1 cut(s) 352
Hin1II CATG 4 cut(s) 329, 402, 786, 1249
HindIII AAGCTT 5 cut(s) 301, 715, 791, 1120, 1175
HinfI GANTC 5 cut(s) 553, 824, 898, 1201, 1444
HphI GGTGA 7 cut(s) 35, 226, 296, 353, 457, 819, 1226
Hpy166II GTNNAC 3 cut(s) 225, 252, 396
Hpy188I TCNGA 5 cut(s) 389, 726, 756, 867, 1365
Hpy188III TCNNGA 5 cut(s) 83, 458, 583, 886, 1483
Hpy8I GTNNAC 3 cut(s) 225, 252, 396
Hpy99I CGWCG 1 cut(s) 21
HpyAV CCTTC 4 cut(s) 20, 89, 320, 1051
HpyCH4III ACNGT 8 cut(s) 281, 393, 474, 539, 544, 709, 740, 998
HpyCH4IV ACGT 4 cut(s) 221, 684, 805, 1296
HpyCH4V TGCA 9 cut(s) 11, 162, 413, 529, 1005, 1191, 1232, 1264, 1372
HpyF3I CTNAG 3 cut(s) 928, 1173, 1362
HpySE526I ACGT 4 cut(s) 221, 684, 805, 1296
Hsp92II CATG 4 cut(s) 329, 402, 786, 1249
Kzo9I GATC 5 cut(s) 439, 585, 639, 1137, 1475
LguI GCTCTTC 1 cut(s) 1053
LmnI GCTCC 2 cut(s) 952, 1084
LweI GCATC 3 cut(s) 149, 526, 1241
MaeI CTAG 3 cut(s) 489, 1071, 1095
MaeII ACGT 4 cut(s) 221, 684, 805, 1296
MaeIII GTNAC 4 cut(s) 74, 121, 691, 1214
MalI GATC 5 cut(s) 441, 587, 641, 1139, 1477
MboI GATC 5 cut(s) 439, 585, 639, 1137, 1475
MboII GAAGA 7 cut(s) 356, 362, 983, 1040, 1386, 1488, 1491
MfeI CAATTG 1 cut(s) 1458
MflI RGATCY 2 cut(s) 585, 639
MlyI GAGTC 2 cut(s) 547, 818
Mph1103I ATGCAT 2 cut(s) 1193, 1234
MroXI GAANNNNTTC 2 cut(s) 474, 872
MseI TTAA 6 cut(s) 549, 671, 735, 774, 845, 1041
MslI CAYNNNNRTG 2 cut(s) 282, 687
MspCI CTTAAG 1 cut(s) 548
MspR9I CCNGG 2 cut(s) 1400, 1469
MunI CAATTG 1 cut(s) 1458
Mva1269I GAATGC 1 cut(s) 929
MvaI CCWGG 2 cut(s) 1400, 1469
MvnI CGCG 1 cut(s) 1274
NdeII GATC 5 cut(s) 439, 585, 639, 1137, 1475
NlaIII CATG 4 cut(s) 329, 402, 786, 1249
NlaIV GGNNCC 1 cut(s) 954
NmuCI GTSAC 2 cut(s) 691, 1214
NsiI ATGCAT 2 cut(s) 1193, 1234
OliI CACNNNNGTG 2 cut(s) 282, 687
PciSI GCTCTTC 1 cut(s) 1053
PctI GAATGC 1 cut(s) 929
PdmI GAANNNNTTC 2 cut(s) 474, 872
PfeI GAWTC 3 cut(s) 898, 1201, 1444
PflMI CCANNNNNTGG 1 cut(s) 1405
PfoI TCCNGGA 1 cut(s) 1467
PkrI GCNGC 1 cut(s) 240
PleI GAGTC 2 cut(s) 547, 818
PpsI GAGTC 2 cut(s) 547, 818
Ppu21I YACGTR 1 cut(s) 806
PsiI TTATAA 1 cut(s) 234
Psp6I CCWGG 2 cut(s) 1398, 1467
PspEI GGTNACC 1 cut(s) 1214
PspFI CCCAGC 2 cut(s) 813, 1141
PspGI CCWGG 2 cut(s) 1398, 1467
PspN4I GGNNCC 1 cut(s) 954
PsuI RGATCY 2 cut(s) 585, 639
RsaI GTAC 4 cut(s) 541, 800, 1183, 1346
RsaNI GTAC 4 cut(s) 540, 799, 1182, 1345
RseI CAYNNNNRTG 2 cut(s) 282, 687
SapI GCTCTTC 1 cut(s) 1053
SaqAI TTAA 6 cut(s) 549, 671, 735, 774, 845, 1041
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 5 cut(s) 439, 585, 639, 1137, 1475
SchI GAGTC 2 cut(s) 547, 818
ScrFI CCNGG 2 cut(s) 1400, 1469
SfaNI GCATC 3 cut(s) 149, 526, 1241
SfcI CTRYAG 1 cut(s) 1302
SmiMI CAYNNNNRTG 2 cut(s) 282, 687
SmlI CTYRAG 4 cut(s) 548, 581, 794, 1289
SmoI CTYRAG 4 cut(s) 548, 581, 794, 1289
SnaBI TACGTA 1 cut(s) 806
SpeI ACTAGT 1 cut(s) 1094
SsiI CCGC 3 cut(s) 238, 307, 1205
SspMI CTAG 3 cut(s) 489, 1071, 1095
StyD4I CCNGG 2 cut(s) 1398, 1467
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 8 cut(s) 281, 393, 474, 539, 544, 709, 740, 998
TaiI ACGT 4 cut(s) 224, 687, 808, 1299
TaqI TCGA 5 cut(s) 19, 243, 984, 1110, 1353
TatI WGTACW 2 cut(s) 798, 1181
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 3 cut(s) 898, 1201, 1444
Tru1I TTAA 6 cut(s) 549, 671, 735, 774, 845, 1041
Tru9I TTAA 6 cut(s) 549, 671, 735, 774, 845, 1041
TseFI GTSAC 2 cut(s) 691, 1214
Tsp45I GTSAC 2 cut(s) 691, 1214
TspDTI ATGAA 8 cut(s) 74, 216, 363, 464, 649, 911, 930, 1044
Van91I CCANNNNNTGG 1 cut(s) 1405
Vha464I CTTAAG 1 cut(s) 548
XapI RAATTY 6 cut(s) 30, 193, 203, 656, 907, 1366
XcmI CCANNNNNNNNNTGG 2 cut(s) 193, 1322
XmiI GTMKAC 1 cut(s) 224
XmnI GAANNNNTTC 2 cut(s) 474, 872
XspI CTAG 3 cut(s) 489, 1071, 1095
Zsp2I ATGCAT 2 cut(s) 1193, 1234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.