pycom14g02480

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000241
Physical Location & Seq
Forward (+)
1946194 .. 1947012
819 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 819 bp
ATGGAAAGCGAGGGTGAGTTAAAAGCTACTGCAAGTCCCCGAGGCGAAGGAGTTTGTAGTGAGAGTGAGAGTATAATAGATGTATTTAGCAAATTTCCAGACCAGATTTCCCATCACATTGTCTCCTTTCTTACTGTGACCGATCTCATTCGCTTCGGTTGTGTGTCTAAAAGATGCAGAGAGCTTTGCCTGTCATCCCCTAAGTTGAACTTCGATGGGTTTTCGTTAGCGAATACGTCCACTTGTTATTACCGGCTCAAGTTGTTGAGTTATTTGGATAGGTTCTTTCTCTATCGCAGGGATAGTAAGATACAGAGCTTTCGTGTTTGTTGGTTTAAGCATGAGGAATACAAGCTTGAGGAATACGAGGGTGAAGAACCACCGTGCTTCTGTGCTCGTGATTGCTACGAAGGTACCCGAATGTTCACATGGATCCAAAATGCGGTTAGGTGTAAGGTTGAAGTGCTGGATCTTGAGACGGATGTATATGATTCTGAGCATGAACTACTTCCATCTTGTGTCTTTCAATGTGAAACTTTGAGGTATCTAGTGTTGCATGTGAATTGGACGATTCTTAGGACTCCCTCGTTCAATTTTCCATCTAATCTCAAGTATATGGAGTTGAAAAAAATCTTTATAGAAAATGAGGGATTTTTCAAGTGGATCTCCTGTTGCTGCAAATGCATCGAGGAGTTAAATCTTCAAGAAGTTCATGGGATAGAAACTATAACCATCAAAAGCTCGTCTCTGAAAAAACTGAGCTTTTCTGGTTTTTCAGTTGACCTCTGCCATATTAACATCTCGTGTGAGAAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

273

Amino Acids

31.74

Weight (kDa)

5.61

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 68 4.1e-07 F-box domain
LRR_At5g56370 PF24758 143 - 259 7.6e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000241)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18954 FvH4_6g18982 FvH4_6g19010 FvH4_6g19020 FvH4_6g19020 FvH4_6g19030 FvH4_6g19030 FvH4_6g19040 FvH4_6g19040 FvH4_6g19040 FvH4_6g19051 FvH4_6g19090 FvH4_6g19090 FvH4_6g19090 FvH4_6g33920 FvH4_6g33940
malus_domestica MD00G1221800.v1.1 MD04G1145400.v1.1 MD12G1026400.v1.1 MD12G1026500.v1.1 MD12G1026700.v1.1 MD12G1026800.v1.1 MD14G1024900.v1.1 MD14G1025000.v1.1 MD14G1025100.v1.1 MD14G1025200.v1.1 MD14G1025300.v1.1 MD14G1025400.v1.1 MD14G1025600.v1.1 MD14G1026200.v1.1 MD14G1026700.v1.1
prunus_persica Prupe.7G104800_v2.0.a1 Prupe.7G104900_v2.0.a1 Prupe.7G105000_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105500_v2.0.a1 Prupe.7G105600_v2.0.a1 Prupe.7G105900_v2.0.a1 Prupe.7G106200_v2.0.a1
pyrus_communis pycom04g13160 pycom07g14430 pycom12g02570 pycom14g02380 pycom14g02430 pycom14g02470 pycom14g02480 pycom14g02490
rosa_chinensis RchiOBHm_Chr3g0474001 RchiOBHm_Chr3g0474011 RchiOBHm_Chr3g0474021 RchiOBHm_Chr3g0474031 RchiOBHm_Chr3g0474041 RchiOBHm_Chr3g0474111 RchiOBHm_Chr3g0474131 RchiOBHm_Chr3g0474161 RchiOBHm_Chr3g0474191
rosa_laevigata RLG00000023848 RLG00000023942 RLG00000023944 RLG00000023946 RLG00000023948 RLG00000023956 RLG00000023957 RLG00000023958
rosa_multiflora Rmu_co8028860.1_g000001 Rmu_sc0002414.1_g000007 Rmu_sc0003170.1_g000008 Rmu_sc0003170.1_g000009 Rmu_sc0004167.1_g000001 Rmu_sc0004507.1_g000023 Rmu_sc0004507.1_g000029 Rmu_sc0004507.1_g000030 Rmu_sc0004507.1_g000032 Rmu_sc0004507.1_g000045 Rmu_sc0005137.1_g000004 Rmu_sc0015051.1_g000002 Rmu_sc0027615.1_g000001 Rmu_sc0027615.1_g000002
rosa_roxburghii Rroxscaffold_6G00407440 Rroxscaffold_6G00407450 Rroxscaffold_6G00407470 Rroxscaffold_6G00407550 Rroxscaffold_6G00407560 Rroxscaffold_6G00407570
rosa_rugosa Rorug03G0137600 Rorug03G0137600 Rorug03G0137600 Rorug03G0138800 Rorug03G0138900 Rorug03G0139200 Rorug03G0139300 Rorug03G0139300 Rorug03G0139400 Rorug03G0139500
rosa_samantha Rh3AG187700 Rh3AG187800 Rh3AG187900 Rh3AG188000 Rh3AG188100 Rh3AG188700 Rh3AG188900 Rh3AG189100 Rh3AG189200 Rh3AG189800 Rh3BG216500 Rh3BG216600 Rh3BG216700 Rh3BG216800 Rh3BG216900 Rh3BG218300 Rh3BG218500 Rh3BG219000 Rh3CG212900 Rh3CG213000 Rh3CG213100 Rh3CG213200 Rh3CG214000 Rh3CG214200 Rh3CG214400 Rh3CG222800 Rh3DG212300 Rh3DG212400 Rh3DG212500 Rh3DG212600 Rh3DG212700 Rh3DG213200 Rh3DG213500 Rh3DG213700 Rh3DG213800 Rh3DG214400 Rh3DG214500 Rh3DG223800
rosa_wichuraiana Rw3G017170 Rw3G017200 Rw3G017210 Rw3G017220 Rw3G017230 Rw3G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 413
AciI CCGC 1 cut(s) 443
AclWI GGATC 4 cut(s) 427, 440, 477, 671
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 7 cut(s) 208, 461, 527, 592, 625, 658, 704
AluBI AGCT 6 cut(s) 26, 184, 318, 355, 741, 762
AluI AGCT 6 cut(s) 26, 184, 318, 355, 741, 762
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 3 cut(s) 127, 470, 750
AlwI GGATC 4 cut(s) 427, 440, 477, 671
Ama87I CYCGRG 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 675
ApoI RAATTY 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 507
Asp718I GGTACC 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 26, 383
AvaI CYCGRG 1 cut(s) 39
BaeI ACNNNNGTAYC 2 cut(s) 397, 430
BamHI GGATCC 1 cut(s) 432
BanI GGYRCC 1 cut(s) 413
BauI CACGAG 2 cut(s) 396, 802
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 1 cut(s) 662
BccI CCATC 5 cut(s) 120, 209, 520, 607, 740
BcgI CGANNNNNNTGC 2 cut(s) 667, 701
BcoDI GTCTC 3 cut(s) 127, 470, 750
BfaI CTAG 1 cut(s) 548
BisI GCNGC 1 cut(s) 676
BlsI GCNGC 1 cut(s) 677
BmeT110I CYCGRG 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 415, 434
BmsI GCATC 2 cut(s) 164, 693
BpuEI CTTGAG 4 cut(s) 242, 377, 494, 593
BsaJI CCNNGG 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse118I RCCGGY 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 194, 487
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMII CTCAG 2 cut(s) 486, 749
BseRI GAGGAG 1 cut(s) 704
BseXI GCAGC 1 cut(s) 662
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 3 cut(s) 127, 470, 750
BsmBI CGTCTC 2 cut(s) 470, 750
BsmFI GGGAC 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 4 cut(s) 142, 432, 469, 663
BspACI CCGC 1 cut(s) 443
BspCNI CTCAG 2 cut(s) 487, 750
BspLI GGNNCC 2 cut(s) 415, 434
BspPI GGATC 4 cut(s) 427, 440, 477, 671
BspT107I GGYRCC 1 cut(s) 413
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 4 cut(s) 142, 432, 469, 663
BssSI CACGAG 2 cut(s) 396, 802
Bst2BI CACGAG 2 cut(s) 396, 802
Bst4CI ACNGT 2 cut(s) 136, 384
BstDEI CTNAG 4 cut(s) 201, 495, 575, 758
BstF5I GGATG 2 cut(s) 194, 487
BstKTI GATC 4 cut(s) 145, 435, 472, 666
BstMAI GTCTC 3 cut(s) 127, 470, 750
BstMBI GATC 4 cut(s) 142, 432, 469, 663
BstMWI GCNNNNNNNGC 1 cut(s) 681
BstNSI RCATGY 1 cut(s) 560
BstV1I GCAGC 1 cut(s) 662
BstX2I RGATCY 3 cut(s) 432, 469, 663
BstYI RGATCY 3 cut(s) 432, 469, 663
BtsCI GGATG 2 cut(s) 194, 487
Cfr10I RCCGGY 1 cut(s) 252
Csp6I GTAC 1 cut(s) 414
CviAII CATG 5 cut(s) 341, 429, 500, 557, 713
CviJI RGCY 7 cut(s) 26, 184, 256, 318, 355, 741, 762
CviKI_1 RGCY 7 cut(s) 26, 184, 256, 318, 355, 741, 762
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 4 cut(s) 201, 495, 575, 758
DpnI GATC 4 cut(s) 144, 434, 471, 665
DpnII GATC 4 cut(s) 142, 432, 469, 663
Eco88I CYCGRG 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 686
Esp3I CGTCTC 2 cut(s) 470, 750
FaeI CATG 5 cut(s) 344, 432, 503, 560, 716
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 1 cut(s) 21
FatI CATG 5 cut(s) 340, 428, 499, 556, 712
Fnu4HI GCNGC 1 cut(s) 676
FokI GGATG 2 cut(s) 181, 494
Fsp4HI GCNGC 1 cut(s) 676
FspBI CTAG 1 cut(s) 548
GluI GCNGC 1 cut(s) 676
HapII CCGG 1 cut(s) 253
Hin1II CATG 5 cut(s) 344, 432, 503, 560, 716
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 3 cut(s) 491, 571, 580
HpaII CCGG 1 cut(s) 253
HphI GGTGA 2 cut(s) 26, 383
Hpy166II GTNNAC 3 cut(s) 240, 426, 781
Hpy188I TCNGA 2 cut(s) 496, 750
Hpy188III TCNNGA 4 cut(s) 98, 398, 473, 704
Hpy8I GTNNAC 3 cut(s) 240, 426, 781
HpyAV CCTTC 2 cut(s) 41, 404
HpyCH4III ACNGT 2 cut(s) 136, 384
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 5 cut(s) 32, 177, 556, 678, 684
HpyF10VI GCNNNNNNNGC 1 cut(s) 681
HpyF3I CTNAG 4 cut(s) 201, 495, 575, 758
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 5 cut(s) 344, 432, 503, 560, 716
KpnI GGTACC 1 cut(s) 417
Kzo9I GATC 4 cut(s) 142, 432, 469, 663
LpnPI CCDG 8 cut(s) 111, 116, 203, 266, 283, 452, 682, 753
Lsp1109I GCAGC 1 cut(s) 662
LweI GCATC 2 cut(s) 164, 693
MaeI CTAG 1 cut(s) 548
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 136
MalI GATC 4 cut(s) 144, 434, 471, 665
MboI GATC 4 cut(s) 142, 432, 469, 663
MboII GAAGA 2 cut(s) 386, 692
MflI RGATCY 3 cut(s) 432, 469, 663
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 3 cut(s) 92, 562, 592
MlyI GAGTC 1 cut(s) 574
Mph1103I ATGCAT 1 cut(s) 686
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 5 cut(s) 20, 336, 695, 795, 817
MspI CCGG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 681
NdeII GATC 4 cut(s) 142, 432, 469, 663
NlaIII CATG 5 cut(s) 344, 432, 503, 560, 716
NlaIV GGNNCC 2 cut(s) 415, 434
NmuCI GTSAC 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 686
NspI RCATGY 1 cut(s) 560
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 2 cut(s) 491, 571
PkrI GCNGC 1 cut(s) 677
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
PspN4I GGNNCC 2 cut(s) 415, 434
PsuI RGATCY 3 cut(s) 432, 469, 663
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SaqAI TTAA 5 cut(s) 20, 336, 695, 795, 817
SatI GCNGC 1 cut(s) 676
Sau3AI GATC 4 cut(s) 142, 432, 469, 663
SchI GAGTC 1 cut(s) 574
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 2 cut(s) 164, 693
SmlI CTYRAG 4 cut(s) 257, 356, 473, 608
SmoI CTYRAG 4 cut(s) 257, 356, 473, 608
Sse9I AATT 3 cut(s) 92, 562, 592
SsiI CCGC 1 cut(s) 443
SspMI CTAG 1 cut(s) 548
TaaI ACNGT 2 cut(s) 136, 384
TaiI ACGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 213, 687
TaqII GACCGA 1 cut(s) 155
TasI AATT 3 cut(s) 92, 562, 592
TfiI GAWTC 2 cut(s) 491, 571
Tru1I TTAA 5 cut(s) 20, 336, 695, 795, 817
Tru9I TTAA 5 cut(s) 20, 336, 695, 795, 817
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 675
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 516, 701
TspGWI ACGGA 1 cut(s) 494
XapI RAATTY 1 cut(s) 92
XceI RCATGY 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 1 cut(s) 548
Zsp2I ATGCAT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.