RchiOBHm_Chr1g0351891
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000263
Physical Location & Seq
Reverse (-)
45059225 .. 45060512
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
ATGCTGTGCCATAAAACTGAGTGTTCCAAGGAAGATGTCAACAAGGTTATGAGTACGGGAATCGAACCTTCATCATCTGCGACGTTCATGAAGGCACTAGTTGTGACTTTTATGGTGGATGCATCAAAGCGGGAACAAAAGATGCAATTTTATAAGGAACGGGGTTGGACTGAAGATGATTTTGTGTTGGCATTTAGAAAACATCCCCTGTTTATGACCTTCTCTGAGAAGAATATTTCGAGCAAAATGGATTTTCTTCTGAACAAGATGGGTTGGCAGCCTGCAAATGTGGCTGGGGATCCATATGTTTTAACTTATAGTTTGGAGAAGCGGATCATACCTACATGTTCAGTTATTAGAGTTCTCCTGTTGAAGGGCTTAATAACGAAGGGAGAGTGTTCCTTGGTTTCCATTCTGAAGAAAAGTGAGAAGTACTTGTTGAATAAGATTGTGCTCAAATATCAAGAGCAAGTACCTGAACTATTGAGCATCTATCAAGGCAAAATGGGTCTTGCAGACCTCGGATTAGGATTTGAGGACAGAGCTAGACTGAATCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

187

Amino Acids

21.37

Weight (kDa)

9.08

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 14 - 144 4.2e-18 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AciI CCGC 2 cut(s) 130, 331
AclWI GGATC 3 cut(s) 293, 306, 341
AcuI CTGAAG 2 cut(s) 192, 437
AfaI GTAC 3 cut(s) 55, 434, 474
AfiI CCNNNNNNNGG 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 344
AgsI TTSAA 2 cut(s) 373, 442
AhlI ACTAGT 1 cut(s) 97
AluBI AGCT 1 cut(s) 545
AluI AGCT 1 cut(s) 545
Alw21I GWGCWC 1 cut(s) 456
AlwI GGATC 3 cut(s) 293, 306, 341
ApeKI GCWGC 1 cut(s) 277
BamHI GGATCC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 289
BccI CCATC 1 cut(s) 262
BcuI ACTAGT 1 cut(s) 97
BfaI CTAG 2 cut(s) 98, 546
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
BmcAI AGTACT 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 300
BmsI GCATC 4 cut(s) 109, 131, 132, 498
BsaJI CCNNGG 3 cut(s) 27, 402, 520
Bsc4I CCNNNNNNNGG 1 cut(s) 373
BseDI CCNNGG 3 cut(s) 27, 402, 520
BseGI GGATG 2 cut(s) 124, 202
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 9, 216
BseXI GCAGC 1 cut(s) 289
BseYI CCCAGC 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 373
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 2 cut(s) 298, 333
BspACI CCGC 2 cut(s) 130, 331
BspCNI CTCAG 2 cut(s) 10, 217
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 300
BspPI GGATC 3 cut(s) 293, 306, 341
BssECI CCNNGG 3 cut(s) 27, 402, 520
BssMI GATC 2 cut(s) 298, 333
BssT1I CCWWGG 2 cut(s) 27, 402
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 18, 225
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 124, 202
BstKTI GATC 2 cut(s) 301, 336
BstMBI GATC 2 cut(s) 298, 333
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BtsCI GGATG 2 cut(s) 124, 202
Cac8I GCNNGC 1 cut(s) 282
CciI TCATGA 1 cut(s) 87
Csp6I GTAC 3 cut(s) 54, 433, 473
CviAII CATG 2 cut(s) 88, 345
CviJI RGCY 4 cut(s) 280, 293, 378, 545
CviKI_1 RGCY 4 cut(s) 280, 293, 378, 545
CviQI GTAC 3 cut(s) 54, 433, 473
DdeI CTNAG 2 cut(s) 18, 225
DpnI GATC 2 cut(s) 300, 335
DpnII GATC 2 cut(s) 298, 333
Eco130I CCWWGG 2 cut(s) 27, 402
Eco57I CTGAAG 2 cut(s) 192, 437
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoT14I CCWWGG 2 cut(s) 27, 402
EcoT22I ATGCAT 1 cut(s) 124
ErhI CCWWGG 2 cut(s) 27, 402
FaeI CATG 2 cut(s) 91, 348
FatI CATG 2 cut(s) 87, 344
FauI CCCGC 1 cut(s) 123
FauNDI CATATG 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 2 cut(s) 131, 189
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 2 cut(s) 98, 546
GluI GCNGC 1 cut(s) 278
GsaI CCCAGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 91, 348
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 2 cut(s) 60, 553
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 4 cut(s) 226, 261, 417, 524
Hpy188III TCNNGA 2 cut(s) 88, 464
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 5 cut(s) 78, 85, 229, 367, 382
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 4 cut(s) 122, 145, 284, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 18, 225
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 2 cut(s) 91, 348
Kzo9I GATC 2 cut(s) 298, 333
LpnPI CCDG 5 cut(s) 221, 279, 294, 380, 489
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 4 cut(s) 109, 131, 132, 498
MaeI CTAG 2 cut(s) 98, 546
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 300, 335
MboI GATC 2 cut(s) 298, 333
MboII GAAGA 5 cut(s) 44, 185, 241, 248, 430
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 2 cut(s) 529, 530
Mph1103I ATGCAT 1 cut(s) 124
MseI TTAA 2 cut(s) 311, 380
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeI CATATG 1 cut(s) 304
NdeII GATC 2 cut(s) 298, 333
NlaIII CATG 2 cut(s) 91, 348
NlaIV GGNNCC 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 124
NspI RCATGY 1 cut(s) 348
PagI TCATGA 1 cut(s) 87
PciI ACATGT 1 cut(s) 344
PfeI GAWTC 2 cut(s) 60, 553
PkrI GCNGC 1 cut(s) 279
PscI ACATGT 1 cut(s) 344
PsiI TTATAA 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 300
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 3 cut(s) 55, 434, 474
RsaNI GTAC 3 cut(s) 54, 433, 473
SaqAI TTAA 2 cut(s) 311, 380
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 2 cut(s) 298, 333
ScaI AGTACT 1 cut(s) 434
SduI GDGCHC 1 cut(s) 456
SetI ASST 8 cut(s) 48, 70, 86, 221, 343, 478, 522, 547
SfaNI GCATC 4 cut(s) 109, 131, 132, 498
SpeI ACTAGT 1 cut(s) 97
Sse9I AATT 1 cut(s) 146
SsiI CCGC 2 cut(s) 130, 331
SspI AATATT 1 cut(s) 235
SspMI CTAG 2 cut(s) 98, 546
StyI CCWWGG 2 cut(s) 27, 402
TaiI ACGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 63, 239
TasI AATT 1 cut(s) 146
TatI WGTACW 1 cut(s) 432
TfiI GAWTC 2 cut(s) 60, 553
Tru1I TTAA 2 cut(s) 311, 380
Tru9I TTAA 2 cut(s) 311, 380
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 60, 76, 104
XagI CCTNNNNNAGG 1 cut(s) 371
XceI RCATGY 1 cut(s) 348
XspI CTAG 2 cut(s) 98, 546
ZrmI AGTACT 1 cut(s) 434
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.