RchiOBHm_Chr3g0496101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000576
Physical Location & Seq
Reverse (-)
46668674 .. 46669474
801 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45844

Sequence Viewer

Length: 801 bp
ATGGCGGATCTTGGTCTGCTTATTCTCTTCCTCGTGGCGCTGGGTAGCGCTGAGGCTGTGTTGGTGTCGGGGGTTGGAGGCGTTGTTGGATCCGCGTCCAAGCTTGACAGTGAAGTGCAAGATGCAGCCTCGTTTGCGGGGATGGCATCTCGGTGGTGGGTGAGTGGTGATCCGGTCTTGGTTTGGTCAAGATCGGATCGGCGGGGTCGATTCCGATCAGATCCAAGGGACGATGGTGCATCTAAGAATGGCATCTTGATTAACCAAATCTGGTTTGGTGTTCCTATTGATAGTGATGATGGATCTACTCTTGATCCATCAATCTATGGCGGAGGCCAGGTTACTCTTGTTGGGGGTGGTGGTGATTTGTGGTGGGGTTGCGTGCAACAGTGCGGCGAATCTGGGAGAGGTGATAGCTTCGGCTTCTTCTCCTCTTCGTTGGAATCTTCCGATGGTTGTAGCGGTGCATATCTCGTGTTCGGGGCAGTTGGTTGTATTTGGTTATTGAGGAGAAAGCATCTGGTCTTCAATGGTGGAGGCAGTAATTTGTCTCTGGTTGTTGACATTGGGCTTGATCTAGGGGCCACTGGTGGTGTTTACGACGGCGGTGGAGGTGGGACAGAAGCTGGCATGTATATTGACGGTGGCTTGCTTGCCTTTTCATCTAGGTTTCGCCCAAAGGGTTATGATTGGGCTGCTAGGGCTCTTTGGACCCATGCAGTTCTTTTGTCTTTAAGTTTTGATGTAGCTTTGGGCCTTCATTCTTTTGTGAATGATGGGCCTATAGTTTTCTTGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

27.68

Weight (kDa)

4.67

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AciI CCGC 8 cut(s) 5, 93, 137, 202, 330, 393, 462, 606
AclWI GGATC 8 cut(s) 15, 84, 97, 164, 204, 215, 308, 310
AfeI AGCGCT 1 cut(s) 49
AgsI TTSAA 1 cut(s) 529
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 4 cut(s) 103, 417, 626, 749
AluI AGCT 4 cut(s) 103, 417, 626, 749
Alw26I GTCTC 1 cut(s) 555
AlwI GGATC 8 cut(s) 15, 84, 97, 164, 204, 215, 308, 310
AlwNI CAGNNNCTG 1 cut(s) 626
Aor51HI AGCGCT 1 cut(s) 49
AoxI GGCC 4 cut(s) 334, 582, 754, 779
ApeKI GCWGC 2 cut(s) 125, 695
AspLEI GCGC 2 cut(s) 40, 50
AspS9I GGNCC 4 cut(s) 582, 711, 754, 779
AsuHPI GGTGA 4 cut(s) 172, 179, 374, 422
AvaII GGWCC 1 cut(s) 711
BamHI GGATCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 706
BauI CACGAG 2 cut(s) 32, 473
BbsI GAAGAC 1 cut(s) 517
BbvCI CCTCAGC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 137, 682
BccI CCATC 6 cut(s) 136, 227, 293, 325, 446, 770
BceAI ACGGC 1 cut(s) 619
BciT130I CCWGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 555
BfaI CTAG 3 cut(s) 578, 666, 699
BfmI CTRYAG 1 cut(s) 783
BfoI RGCGCY 2 cut(s) 41, 51
BisI GCNGC 3 cut(s) 126, 394, 696
BlsI GCNGC 3 cut(s) 127, 395, 697
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 711
BmgT120I GGNCC 4 cut(s) 582, 711, 754, 779
BmiI GGNNCC 3 cut(s) 91, 583, 713
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 5 cut(s) 112, 155, 248, 261, 526
BpiI GAAGAC 1 cut(s) 517
Bpu10I CCTNAGC 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 324, 354
Bse1I ACTGG 1 cut(s) 592
Bse8I GATNNNNATC 1 cut(s) 214
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 214
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 2 cut(s) 421, 523
BseXI GCAGC 2 cut(s) 137, 682
BseYI CCCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 4 cut(s) 336, 584, 756, 781
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 2 cut(s) 242, 631
BsmAI GTCTC 1 cut(s) 555
BsmFI GGGAC 2 cut(s) 242, 631
BsnI GGCC 4 cut(s) 336, 584, 756, 781
Bsp1286I GDGCHC 1 cut(s) 706
BspACI CCGC 8 cut(s) 5, 93, 137, 202, 330, 393, 462, 606
BspANI GGCC 4 cut(s) 336, 584, 756, 781
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 91, 583, 713
BspPI GGATC 8 cut(s) 15, 84, 97, 164, 204, 215, 308, 310
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 1 cut(s) 224
BssSI CACGAG 2 cut(s) 32, 473
BssT1I CCWWGG 1 cut(s) 224
Bst2BI CACGAG 2 cut(s) 32, 473
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 3 cut(s) 110, 390, 644
Bst6I CTCTTC 2 cut(s) 32, 439
BstC8I GCNNGC 4 cut(s) 383, 628, 650, 654
BstDEI CTNAG 2 cut(s) 51, 243
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 2 cut(s) 41, 51
BstHHI GCGC 2 cut(s) 40, 50
BstMAI GTCTC 1 cut(s) 555
BstMWI GCNNNNNNNGC 3 cut(s) 134, 143, 701
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 783
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 137, 682
BstV2I GAAGAC 1 cut(s) 517
BstX2I RGATCY 4 cut(s) 7, 89, 220, 302
BstYI RGATCY 4 cut(s) 7, 89, 220, 302
BsuRI GGCC 4 cut(s) 336, 584, 756, 781
BtsCI GGATG 1 cut(s) 147
BtsIMutI CAGTG 3 cut(s) 115, 395, 585
Cac8I GCNNGC 4 cut(s) 383, 628, 650, 654
CaiI CAGNNNCTG 1 cut(s) 626
CfoI GCGC 2 cut(s) 40, 50
Cfr13I GGNCC 4 cut(s) 582, 711, 754, 779
CseI GACGC 1 cut(s) 84
CviAII CATG 2 cut(s) 631, 716
DdeI CTNAG 2 cut(s) 51, 243
Eam1104I CTCTTC 2 cut(s) 32, 439
EarI CTCTTC 2 cut(s) 32, 439
EciI GGCGGA 2 cut(s) 20, 345
Eco130I CCWWGG 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 711
Eco47III AGCGCT 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 706
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 634, 719
FaiI YATR 7 cut(s) 327, 469, 632, 636, 687, 717, 785
FaqI GGGAC 2 cut(s) 242, 631
FatI CATG 2 cut(s) 630, 715
FauI CCCGC 2 cut(s) 130, 195
Fnu4HI GCNGC 3 cut(s) 126, 394, 696
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 706
Fsp4HI GCNGC 3 cut(s) 126, 394, 696
FspBI CTAG 3 cut(s) 578, 666, 699
GlaI GCGC 2 cut(s) 39, 49
GluI GCNGC 3 cut(s) 126, 394, 696
GsaI CCCAGC 1 cut(s) 44
HaeII RGCGCY 2 cut(s) 41, 51
HaeIII GGCC 4 cut(s) 336, 584, 756, 781
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 84
HhaI GCGC 2 cut(s) 40, 50
Hin1II CATG 2 cut(s) 634, 719
Hin6I GCGC 2 cut(s) 38, 48
HinP1I GCGC 2 cut(s) 38, 48
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 3 cut(s) 210, 398, 443
HpaII CCGG 1 cut(s) 173
HphI GGTGA 4 cut(s) 172, 179, 374, 422
Hpy166II GTNNAC 2 cut(s) 562, 598
Hpy188I TCNGA 4 cut(s) 196, 215, 220, 451
Hpy188III TCNNGA 3 cut(s) 189, 256, 311
Hpy8I GTNNAC 2 cut(s) 562, 598
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 1 cut(s) 767
HpyCH4III ACNGT 3 cut(s) 110, 390, 644
HpyCH4V TGCA 7 cut(s) 118, 125, 239, 385, 467, 719, 796
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 143, 701
HpyF3I CTNAG 2 cut(s) 51, 243
Hsp92II CATG 2 cut(s) 634, 719
HspAI GCGC 2 cut(s) 38, 48
Lsp1109I GCAGC 2 cut(s) 137, 682
LweI GCATC 5 cut(s) 112, 155, 248, 261, 526
MaeI CTAG 3 cut(s) 578, 666, 699
MaeIII GTNAC 1 cut(s) 340
MboII GAAGA 5 cut(s) 19, 418, 426, 438, 517
MflI RGATCY 4 cut(s) 7, 89, 220, 302
MhlI GDGCHC 1 cut(s) 706
MluCI AATT 1 cut(s) 544
MmeI TCCRAC 3 cut(s) 55, 67, 420
MseI TTAA 3 cut(s) 261, 734, 799
MslI CAYNNNNRTG 1 cut(s) 151
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 134, 143, 701
NlaIII CATG 2 cut(s) 634, 719
NlaIV GGNNCC 3 cut(s) 91, 583, 713
NspI RCATGY 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 3 cut(s) 210, 398, 443
PkrI GCNGC 3 cut(s) 127, 395, 697
Psp6I CCWGG 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 3 cut(s) 91, 583, 713
PspPI GGNCC 4 cut(s) 582, 711, 754, 779
PstNI CAGNNNCTG 1 cut(s) 626
PsuI RGATCY 4 cut(s) 7, 89, 220, 302
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 3 cut(s) 261, 734, 799
SatI GCNGC 3 cut(s) 126, 394, 696
Sau96I GGNCC 4 cut(s) 582, 711, 754, 779
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 1 cut(s) 706
SetI ASST 8 cut(s) 105, 342, 412, 419, 616, 628, 671, 751
SfaNI GCATC 5 cut(s) 112, 155, 248, 261, 526
SfcI CTRYAG 1 cut(s) 783
SinI GGWCC 1 cut(s) 711
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 1 cut(s) 544
SsiI CCGC 8 cut(s) 5, 93, 137, 202, 330, 393, 462, 606
SspMI CTAG 3 cut(s) 578, 666, 699
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 3 cut(s) 110, 390, 644
TaqI TCGA 1 cut(s) 208
TasI AATT 1 cut(s) 544
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 3 cut(s) 210, 398, 443
Tru1I TTAA 3 cut(s) 261, 734, 799
Tru9I TTAA 3 cut(s) 261, 734, 799
TscAI CASTG 3 cut(s) 115, 395, 592
TseI GCWGC 2 cut(s) 125, 695
TspDTI ATGAA 2 cut(s) 651, 749
TspRI CASTG 3 cut(s) 115, 395, 592
VpaK11BI GGWCC 1 cut(s) 711
XceI RCATGY 1 cut(s) 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XspI CTAG 3 cut(s) 578, 666, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.