Rmu_sc0010937.1_g000002

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010937.1
OG0000576
Physical Location & Seq
Forward (+)
2076 .. 3703
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010937.1_g000002.1.cds

Sequence Viewer

Length: 1002 bp
atgagttgcctcatccgcacacctgaggacgcaacatttctccgcaataaagacattattaacaactatcttggaaccgacgaggaagttgccaatttctttagaaccttaggtaaagatgtgacttttgatattgatgagagctatctatgcaagttgttcatagatgtgaacaagtaccagagaaatgttttgcacgtgacatggggagagttcaaattcaagtactttgattcccccttgtctttcgtatctgctttagctgctgtcatagttctactgcttaccgtacttcagaccttctatactgtttatgagtattcccatccacaacaccccaagaacaaaaactttcgacctagagctctgctagggtttcggaatcctcttcctaagggcggcggtttctcgtatgctagctgttgctcatcaatggtggttatggcagacttgggtctgctttttctcttcttcattgcgctgggtggcgctgaggcgagattgatttcatgggatgggagcgctgttgtttctgcgtccaaactcgatggtgaagtgaaagacgcggcctcgtttgcagggatggcatctaggtggcggatgagcagcgatccgatcttgggttgggctgtcgatgaccatgctgttatggaagacgatgatctgctggtttgcttgacctccggatttgccatctctaatggcgacctgaggctgccggagatgagaccgactctgtttccctcgggctcgaactctttgttggtggggaggatgactactttctactcatcaaaggaagttgcttttgatggtggtaacccggttgccaggatgttggctgcgagctttgacaacagtggctgcgtagattgcgacgaagctcgatggcatgacgtggatgatatcgggtctatggtgtttttctcattgcctgaactgatttgcctggaatcgggccctaccattgaaggtggcagagcgggcgacgtcctccggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

333

Amino Acids

36.73

Weight (kDa)

4.83

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 993
AccBSI CCGCTC 1 cut(s) 983
AccII CGCG 1 cut(s) 566
AccIII TCCGGA 1 cut(s) 683
AciI CCGC 7 cut(s) 16, 43, 399, 402, 566, 598, 983
AclWI GGATC 1 cut(s) 605
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 278
AcvI CACGTG 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 990
AfaI GTAC 3 cut(s) 179, 227, 291
AfeI AGCGCT 1 cut(s) 523
AfiI CCNNNNNNNGG 3 cut(s) 398, 620, 955
AgsI TTSAA 3 cut(s) 217, 223, 971
AjiI CACGTC 1 cut(s) 898
AjnI CCWGG 2 cut(s) 830, 948
AjuI GAANNNNNNNTTGG 2 cut(s) 746, 778
AluBI AGCT 6 cut(s) 144, 263, 365, 420, 849, 884
AluI AGCT 6 cut(s) 144, 263, 365, 420, 849, 884
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 721
AlwI GGATC 1 cut(s) 605
AlwNI CAGNNNCTG 1 cut(s) 864
Ama87I CYCGRG 1 cut(s) 745
Aor13HI TCCGGA 1 cut(s) 683
Aor51HI AGCGCT 1 cut(s) 523
AoxI GGCC 2 cut(s) 567, 958
ApaI GGGCCC 1 cut(s) 962
ApeKI GCWGC 5 cut(s) 263, 606, 715, 842, 864
ApoI RAATTY 1 cut(s) 218
AspLEI GCGC 3 cut(s) 481, 491, 524
AspS9I GGNCC 2 cut(s) 958, 959
AsuC2I CCSGG 1 cut(s) 824
AsuHPI GGTGA 1 cut(s) 563
AsuNHI GCTAGC 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 745
AxyI CCTNAGG 4 cut(s) 24, 109, 393, 710
BaeGI GKGCMC 1 cut(s) 962
BanII GRGCYC 3 cut(s) 367, 752, 962
BbrPI CACGTG 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 367
BbvCI CCTCAGC 1 cut(s) 492
BbvI GCAGC 5 cut(s) 250, 618, 702, 829, 851
BccI CCATC 7 cut(s) 333, 509, 542, 577, 701, 806, 882
BcgI CGANNNNNNTGC 4 cut(s) 71, 105, 623, 657
BciT130I CCWGG 2 cut(s) 832, 950
BcnI CCSGG 1 cut(s) 824
BcoDI GTCTC 1 cut(s) 721
BfaI CTAG 4 cut(s) 360, 371, 417, 591
BfoI RGCGCY 2 cut(s) 492, 525
BisI GCNGC 7 cut(s) 264, 400, 567, 607, 716, 843, 865
BlsI GCNGC 7 cut(s) 265, 401, 568, 608, 717, 844, 866
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 3 cut(s) 824, 832, 950
BmeT110I CYCGRG 1 cut(s) 745
BmgBI CACGTC 1 cut(s) 898
BmgT120I GGNCC 2 cut(s) 958, 959
BmiI GGNNCC 2 cut(s) 76, 960
BmrFI CCNGG 3 cut(s) 824, 832, 950
BmsI GCATC 1 cut(s) 596
BmtI GCTAGC 1 cut(s) 420
BoxI GACNNNNGTC 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 660
BplI GAGNNNNNCTC 2 cut(s) 718, 750
Bpu10I CCTNAGC 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 824
BsaAI YACGTR 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 990
BsaI GGTCTC 1 cut(s) 721
BsaJI CCNNGG 1 cut(s) 744
BsaWI WCCGGW 2 cut(s) 683, 996
Bsc4I CCNNNNNNNGG 3 cut(s) 398, 620, 955
Bse21I CCTNAGG 4 cut(s) 24, 109, 393, 710
Bse3DI GCAATG 2 cut(s) 474, 929
BseAI TCCGGA 1 cut(s) 683
BseBI CCWGG 2 cut(s) 832, 950
BseDI CCNNGG 1 cut(s) 744
BseGI GGATG 8 cut(s) 12, 325, 520, 588, 606, 780, 840, 907
BseLI CCNNNNNNNGG 3 cut(s) 398, 620, 955
BseMI GCAATG 2 cut(s) 474, 929
BseMII CTCAG 3 cut(s) 15, 483, 701
BseSI GKGCMC 1 cut(s) 962
BseXI GCAGC 5 cut(s) 250, 618, 702, 829, 851
BseYI CCCAGC 1 cut(s) 481
Bsh1236I CGCG 1 cut(s) 566
BshFI GGCC 2 cut(s) 569, 960
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 745
BsiSI CCGG 4 cut(s) 684, 719, 824, 997
BslI CCNNNNNNNGG 3 cut(s) 398, 620, 955
BsmAI GTCTC 1 cut(s) 721
BsnI GGCC 2 cut(s) 569, 960
Bso31I GGTCTC 1 cut(s) 721
BsoBI CYCGRG 1 cut(s) 745
Bsp120I GGGCCC 1 cut(s) 958
Bsp1286I GDGCHC 3 cut(s) 367, 752, 962
Bsp13I TCCGGA 1 cut(s) 683
Bsp143I GATC 3 cut(s) 610, 615, 661
BspACI CCGC 7 cut(s) 16, 43, 399, 402, 566, 598, 983
BspANI GGCC 2 cut(s) 569, 960
BspCNI CTCAG 3 cut(s) 16, 484, 702
BspEI TCCGGA 1 cut(s) 683
BspFNI CGCG 1 cut(s) 566
BspLI GGNNCC 2 cut(s) 76, 960
BspOI GCTAGC 1 cut(s) 420
BspPI GGATC 1 cut(s) 605
BspTNI GGTCTC 1 cut(s) 721
BsrBI CCGCTC 1 cut(s) 983
BsrDI GCAATG 2 cut(s) 474, 929
BssECI CCNNGG 1 cut(s) 744
BssMI GATC 3 cut(s) 610, 615, 661
BssNI GRCGYC 1 cut(s) 990
Bst2UI CCWGG 2 cut(s) 832, 950
Bst4CI ACNGT 3 cut(s) 289, 310, 860
Bst6I CTCTTC 2 cut(s) 393, 473
BstACI GRCGYC 1 cut(s) 990
BstBAI YACGTR 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 418, 847, 985
BstDEI CTNAG 5 cut(s) 24, 109, 393, 492, 710
BstEII GGTNACC 1 cut(s) 818
BstF5I GGATG 8 cut(s) 12, 325, 520, 588, 606, 780, 840, 907
BstFNI CGCG 1 cut(s) 566
BstH2I RGCGCY 2 cut(s) 492, 525
BstHHI GCGC 3 cut(s) 481, 491, 524
BstKTI GATC 3 cut(s) 613, 618, 664
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 3 cut(s) 610, 615, 661
BstMWI GCNNNNNNNGC 7 cut(s) 15, 150, 263, 575, 584, 873, 984
BstNI CCWGG 2 cut(s) 832, 950
BstPAI GACNNNNGTC 1 cut(s) 453
BstPI GGTNACC 1 cut(s) 818
BstSCI CCNGG 3 cut(s) 822, 830, 948
BstSLI GKGCMC 1 cut(s) 962
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 5 cut(s) 250, 618, 702, 829, 851
BstV2I GAAGAC 1 cut(s) 660
BstXI CCANNNNNNTGG 1 cut(s) 838
Bsu36I CCTNAGG 4 cut(s) 24, 109, 393, 710
BsuRI GGCC 2 cut(s) 569, 960
BtrI CACGTC 1 cut(s) 898
BtsCI GGATG 8 cut(s) 12, 325, 520, 588, 606, 780, 840, 907
BtsIMutI CAGTG 1 cut(s) 865
Cac8I GCNNGC 3 cut(s) 418, 847, 985
CaiI CAGNNNCTG 1 cut(s) 864
CfoI GCGC 3 cut(s) 481, 491, 524
Cfr13I GGNCC 2 cut(s) 958, 959
CseI GACGC 3 cut(s) 38, 525, 572
Csp6I GTAC 3 cut(s) 178, 226, 290
CviAII CATG 4 cut(s) 204, 510, 641, 893
CviQI GTAC 3 cut(s) 178, 226, 290
DdeI CTNAG 5 cut(s) 24, 109, 393, 492, 710
DpnI GATC 3 cut(s) 612, 617, 663
DpnII GATC 3 cut(s) 610, 615, 661
Eam1104I CTCTTC 2 cut(s) 393, 473
EarI CTCTTC 2 cut(s) 393, 473
EciI GGCGGA 1 cut(s) 613
Ecl136II GAGCTC 1 cut(s) 365
Eco24I GRGCYC 3 cut(s) 367, 752, 962
Eco31I GGTCTC 1 cut(s) 721
Eco32I GATATC 1 cut(s) 907
Eco47III AGCGCT 1 cut(s) 523
Eco53kI GAGCTC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 278
Eco72I CACGTG 1 cut(s) 199
Eco81I CCTNAGG 4 cut(s) 24, 109, 393, 710
Eco88I CYCGRG 1 cut(s) 745
Eco91I GGTNACC 1 cut(s) 818
EcoICRI GAGCTC 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 959
EcoO65I GGTNACC 1 cut(s) 818
EcoRII CCWGG 2 cut(s) 830, 948
EcoRV GATATC 1 cut(s) 907
EcoT38I GRGCYC 3 cut(s) 367, 752, 962
FaeI CATG 4 cut(s) 207, 513, 644, 896
FatI CATG 4 cut(s) 203, 509, 640, 892
FauI CCCGC 1 cut(s) 976
Fnu4HI GCNGC 7 cut(s) 264, 400, 567, 607, 716, 843, 865
FokI GGATG 7 cut(s) 312, 527, 595, 613, 787, 847, 914
FriOI GRGCYC 3 cut(s) 367, 752, 962
Fsp4HI GCNGC 7 cut(s) 264, 400, 567, 607, 716, 843, 865
FspBI CTAG 4 cut(s) 360, 371, 417, 591
GlaI GCGC 3 cut(s) 480, 490, 523
GluI GCNGC 7 cut(s) 264, 400, 567, 607, 716, 843, 865
GsaI CCCAGC 1 cut(s) 485
HaeII RGCGCY 2 cut(s) 492, 525
HaeIII GGCC 2 cut(s) 569, 960
HapII CCGG 4 cut(s) 684, 719, 824, 997
HgaI GACGC 3 cut(s) 38, 525, 572
HhaI GCGC 3 cut(s) 481, 491, 524
Hin1I GRCGYC 1 cut(s) 990
Hin1II CATG 4 cut(s) 207, 513, 644, 896
Hin6I GCGC 3 cut(s) 479, 489, 522
HinP1I GCGC 3 cut(s) 479, 489, 522
HinfI GANTC 4 cut(s) 233, 382, 733, 953
HpaII CCGG 4 cut(s) 684, 719, 824, 997
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 297, 381, 615
Hpy188III TCNNGA 1 cut(s) 684
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 3 cut(s) 83, 881, 992
HpyAV CCTTC 2 cut(s) 310, 965
HpyCH4III ACNGT 3 cut(s) 289, 310, 860
HpyCH4IV ACGT 3 cut(s) 198, 897, 990
HpyCH4V TGCA 3 cut(s) 153, 196, 578
HpyF10VI GCNNNNNNNGC 7 cut(s) 15, 150, 263, 575, 584, 873, 984
HpyF3I CTNAG 5 cut(s) 24, 109, 393, 492, 710
HpySE526I ACGT 3 cut(s) 198, 897, 990
Hsp92I GRCGYC 1 cut(s) 990
Hsp92II CATG 4 cut(s) 207, 513, 644, 896
HspAI GCGC 3 cut(s) 479, 489, 522
Kpn2I TCCGGA 1 cut(s) 683
Kzo9I GATC 3 cut(s) 610, 615, 661
LmnI GCTCC 1 cut(s) 519
Lsp1109I GCAGC 5 cut(s) 250, 618, 702, 829, 851
LweI GCATC 1 cut(s) 596
MaeI CTAG 4 cut(s) 360, 371, 417, 591
MaeII ACGT 3 cut(s) 198, 897, 990
MaeIII GTNAC 3 cut(s) 121, 199, 818
MalI GATC 3 cut(s) 612, 617, 663
MbiI CCGCTC 1 cut(s) 983
MboI GATC 3 cut(s) 610, 615, 661
MboII GAAGA 4 cut(s) 380, 460, 463, 665
MhlI GDGCHC 3 cut(s) 367, 752, 962
MluCI AATT 2 cut(s) 94, 218
MlyI GAGTC 1 cut(s) 727
MroI TCCGGA 1 cut(s) 683
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 2 cut(s) 167, 592
MspI CCGG 4 cut(s) 684, 719, 824, 997
MspR9I CCNGG 3 cut(s) 824, 832, 950
MvaI CCWGG 2 cut(s) 832, 950
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 7 cut(s) 15, 150, 263, 575, 584, 873, 984
NciI CCSGG 1 cut(s) 824
NdeII GATC 3 cut(s) 610, 615, 661
NheI GCTAGC 1 cut(s) 416
NlaIII CATG 4 cut(s) 207, 513, 644, 896
NlaIV GGNNCC 2 cut(s) 76, 960
NmuCI GTSAC 2 cut(s) 121, 199
PfeI GAWTC 3 cut(s) 233, 382, 953
PkrI GCNGC 7 cut(s) 265, 401, 568, 608, 717, 844, 866
PleI GAGTC 1 cut(s) 727
PmaCI CACGTG 1 cut(s) 199
PmlI CACGTG 1 cut(s) 199
PpsI GAGTC 1 cut(s) 727
Ppu21I YACGTR 1 cut(s) 199
PshAI GACNNNNGTC 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 830, 948
PspCI CACGTG 1 cut(s) 199
PspEI GGTNACC 1 cut(s) 818
PspFI CCCAGC 1 cut(s) 481
PspGI CCWGG 2 cut(s) 830, 948
PspN4I GGNNCC 2 cut(s) 76, 960
PspOMI GGGCCC 1 cut(s) 958
PspPI GGNCC 2 cut(s) 958, 959
PstNI CAGNNNCTG 1 cut(s) 864
RsaI GTAC 3 cut(s) 179, 227, 291
RsaNI GTAC 3 cut(s) 178, 226, 290
RseI CAYNNNNRTG 2 cut(s) 167, 592
SacI GAGCTC 1 cut(s) 367
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 7 cut(s) 264, 400, 567, 607, 716, 843, 865
Sau3AI GATC 3 cut(s) 610, 615, 661
Sau96I GGNCC 2 cut(s) 958, 959
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 727
ScrFI CCNGG 3 cut(s) 824, 832, 950
SduI GDGCHC 3 cut(s) 367, 752, 962
SfaNI GCATC 1 cut(s) 596
SmiMI CAYNNNNRTG 2 cut(s) 167, 592
Sse9I AATT 2 cut(s) 94, 218
SsiI CCGC 7 cut(s) 16, 43, 399, 402, 566, 598, 983
SspMI CTAG 4 cut(s) 360, 371, 417, 591
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 3 cut(s) 822, 830, 948
TaaI ACNGT 3 cut(s) 289, 310, 860
TaiI ACGT 3 cut(s) 201, 900, 993
TaqI TCGA 5 cut(s) 355, 546, 633, 752, 886
TaqII GACCGA 1 cut(s) 745
TasI AATT 2 cut(s) 94, 218
TatI WGTACW 1 cut(s) 225
TauI GCSGC 2 cut(s) 402, 569
TfiI GAWTC 3 cut(s) 233, 382, 953
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 2 cut(s) 121, 199
TseI GCWGC 5 cut(s) 263, 606, 715, 842, 864
Tsp45I GTSAC 2 cut(s) 121, 199
TspDTI ATGAA 3 cut(s) 151, 463, 498
TspRI CASTG 1 cut(s) 865
XapI RAATTY 1 cut(s) 218
XspI CTAG 4 cut(s) 360, 371, 417, 591
ZraI GACGTC 1 cut(s) 991
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.