RLG00000020869

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000576
Physical Location & Seq
Forward (+)
69696024 .. 69696471
448 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020869

Sequence Viewer

Length: 360 bp
ATGGGTGGGGGCGCTGTTGTTTCCGCATCCAAACTCGATGGTGAAGTGAAAGATGTTGCCTCGTTTGCAGGGATGGCATCTAGGTGGCGGATGAGCGGCGATCCGATCTTGGGTTGGGATGTCGATGACCTTGCTGTGGTGGAAGACGATGATCTGCTGGTTTGCTTGACCTCAGGGATGACTTCCTTCTACTCATCAAAGGAAGCTGCTTTTGATGGTGGTAACCTGGTGCCCGGGATGTTGGCTGCGAGCTCTAACATCGGTGGCTGCACAGATTGCGATGAAGCTCGATGCCAAGAAGGGGATAAGCTTGGGTCTATGGTGTTTTGCTCGTCGCCTGAATTGTTTCACCTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.38

Weight (kDa)

4.08

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccBSI CCGCTC 1 cut(s) 96
AciI CCGC 3 cut(s) 24, 88, 96
AclWI GGATC 1 cut(s) 95
AfiI CCNNNNNNNGG 3 cut(s) 110, 136, 301
AjnI CCWGG 2 cut(s) 225, 351
AluBI AGCT 4 cut(s) 206, 252, 287, 310
AluI AGCT 4 cut(s) 206, 252, 287, 310
Alw21I GWGCWC 1 cut(s) 254
AlwI GGATC 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 233
ApeKI GCWGC 3 cut(s) 206, 245, 267
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 234, 235
AsuHPI GGTGA 2 cut(s) 53, 341
AvaI CYCGRG 1 cut(s) 233
AxyI CCTNAGG 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 3 cut(s) 193, 232, 254
BccI CCATC 3 cut(s) 32, 67, 209
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 2 cut(s) 227, 353
BcnI CCSGG 2 cut(s) 234, 235
BfaI CTAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 4 cut(s) 97, 207, 246, 268
BlsI GCNGC 4 cut(s) 98, 208, 247, 269
Bme1390I CCNGG 4 cut(s) 227, 234, 235, 353
BmeT110I CYCGRG 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 4 cut(s) 227, 234, 235, 353
BmsI GCATC 3 cut(s) 35, 86, 281
BpiI GAAGAC 1 cut(s) 150
BpuMI CCSGG 2 cut(s) 234, 235
BsaJI CCNNGG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 136, 301
Bse21I CCTNAGG 1 cut(s) 172
BseBI CCWGG 2 cut(s) 227, 353
BseDI CCNNGG 1 cut(s) 233
BseGI GGATG 6 cut(s) 26, 78, 96, 124, 183, 243
BseLI CCNNNNNNNGG 3 cut(s) 110, 136, 301
BseMII CTCAG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 3 cut(s) 193, 232, 254
BsgI GTGCAG 1 cut(s) 253
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 110, 136, 301
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 2 cut(s) 234, 254
Bsp143I GATC 3 cut(s) 100, 105, 151
BspACI CCGC 3 cut(s) 24, 88, 96
BspCNI CTCAG 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 229
BsrBI CCGCTC 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 3 cut(s) 100, 105, 151
Bst2UI CCWGG 2 cut(s) 227, 353
BstAPI GCANNNNNTGC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 172
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 6 cut(s) 26, 78, 96, 124, 183, 243
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 103, 108, 154
BstMBI GATC 3 cut(s) 100, 105, 151
BstMWI GCNNNNNNNGC 3 cut(s) 65, 74, 276
BstNI CCWGG 2 cut(s) 227, 353
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 4 cut(s) 225, 232, 233, 351
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 3 cut(s) 193, 232, 254
BstV2I GAAGAC 1 cut(s) 150
Bsu36I CCTNAGG 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 6 cut(s) 26, 78, 96, 124, 183, 243
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 1 cut(s) 14
Cfr9I CCCGGG 1 cut(s) 233
CsiI ACCWGGT 1 cut(s) 225
CviJI RGCY 6 cut(s) 206, 245, 252, 267, 287, 310
CviKI_1 RGCY 6 cut(s) 206, 245, 252, 267, 287, 310
DdeI CTNAG 1 cut(s) 172
DpnI GATC 3 cut(s) 102, 107, 153
DpnII GATC 3 cut(s) 100, 105, 151
EciI GGCGGA 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 252
Eco81I CCTNAGG 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 233
Eco91I GGTNACC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 252
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 225, 351
EcoT38I GRGCYC 1 cut(s) 254
FaiI YATR 1 cut(s) 320
Fnu4HI GCNGC 4 cut(s) 97, 207, 246, 268
FokI GGATG 6 cut(s) 13, 85, 103, 131, 190, 250
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 4 cut(s) 97, 207, 246, 268
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 13
GluI GCNGC 4 cut(s) 97, 207, 246, 268
HaeII RGCGCY 1 cut(s) 15
HapII CCGG 1 cut(s) 234
HhaI GCGC 1 cut(s) 14
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 308
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 53, 341
Hpy188I TCNGA 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 196, 293
HpyCH4V TGCA 2 cut(s) 68, 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 74, 276
HpyF3I CTNAG 1 cut(s) 172
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 3 cut(s) 100, 105, 151
LpnPI CCDG 8 cut(s) 54, 143, 159, 212, 239, 247, 338, 351
Lsp1109I GCAGC 3 cut(s) 193, 232, 254
LweI GCATC 3 cut(s) 35, 86, 281
MabI ACCWGGT 1 cut(s) 225
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 221
MalI GATC 3 cut(s) 102, 107, 153
MbiI CCGCTC 1 cut(s) 96
MboI GATC 3 cut(s) 100, 105, 151
MboII GAAGA 1 cut(s) 155
MhlI GDGCHC 2 cut(s) 234, 254
MluCI AATT 1 cut(s) 341
MnlI CCTC 2 cut(s) 70, 181
MroXI GAANNNNTTC 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 82
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 4 cut(s) 227, 234, 235, 353
MvaI CCWGG 2 cut(s) 227, 353
MwoI GCNNNNNNNGC 3 cut(s) 65, 74, 276
NciI CCSGG 2 cut(s) 234, 235
NdeII GATC 3 cut(s) 100, 105, 151
NlaIV GGNNCC 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 345
PkrI GCNGC 4 cut(s) 98, 208, 247, 269
Psp124BI GAGCTC 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 225, 351
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 2 cut(s) 225, 351
PspN4I GGNNCC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 82
SacI GAGCTC 1 cut(s) 254
SatI GCNGC 4 cut(s) 97, 207, 246, 268
Sau3AI GATC 3 cut(s) 100, 105, 151
ScrFI CCNGG 4 cut(s) 227, 234, 235, 353
SduI GDGCHC 2 cut(s) 234, 254
SetI ASST 9 cut(s) 86, 132, 173, 208, 228, 254, 289, 312, 354
SexAI ACCWGGT 1 cut(s) 225
SfaNI GCATC 3 cut(s) 35, 86, 281
SmaI CCCGGG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 82
Sse9I AATT 1 cut(s) 341
SsiI CCGC 3 cut(s) 24, 88, 96
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 254
StyD4I CCNGG 4 cut(s) 225, 232, 233, 351
TaqI TCGA 3 cut(s) 36, 123, 289
TasI AATT 1 cut(s) 341
TauI GCSGC 1 cut(s) 99
TseI GCWGC 3 cut(s) 206, 245, 267
TspDTI ATGAA 1 cut(s) 297
TspMI CCCGGG 1 cut(s) 233
XmaI CCCGGG 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.